RNA id: TCONS_00007526


Basic Information

Item Value
RNA id TCONS_00007526
length 4186
RNA type mRNA
GC content 0.48
exon number 26
gene id XLOC_003928
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10388303 ~ 10456553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCTTGCTTTTTTGAATTCACCGAGTTAGTTGAGCAGAGCCACCTATCAAATGAGCGTATACAATGGGCGAACTAAACTAATATccattacttatttttattattttgcacttTGGGCAAATTTTACTTGTCATTTGGAGGACTGTGCGGGTTACGTTTGCAACTGTTAGTTTTAAACACTACTTCGCCTAAACAAAAACACTGATTGTTTAGCTGGTTCGGCAGCCAGCTGAGCTATTAACGTTAAGTGTTTCTTCATTTTCCAAAGCGTTTCCAGGACACATCAGGACATATTCATCTTTCATacgCCCTTGTTCACTGCTTTCTCACTGGCCTCcagtttttttttggaaattctGGACAGGACTGGGTCACCACCCCTTGTCACAGCGCCATGGCTGACAGCAGCATACTTACTTTAGGGCCGGGCCGAAGCATTCTGGTGGACTCCTCCGTGTATGACTCCCGGATGGCCGAGACCTCAAAAGAGCAATATTTCATTGGTCTACACTCAGACGAGACAGAGGgtgTATTGCCCAGAGTTGAGACCAGGGTGGTGTTGGTTGGGGAGGCCTGCAAAATGGCAGAACTTGAGAAAGCTCTTCAGGCCATCACAATAATGGAAGTCCCGGTGGTAAAGATTAAAGAAGGGCAGCCGGGCACAGAAGCGCgtgagaaattgataaaatctATAGTCAATATGGATTTAAACACCCCCTGTATCAAGACTGACAATGTCTGTGATTTCGGTGATGGTGAGAACTGCGAGTTCGAGACGGTGTTTGTGTTGAAAGACTTCCAGGCTCCTGAATACAGCTTCCTGTACAAGAATGACAGCCGTATCCTGGGGCCTCCTGCCGTGATGCACTGCGCCAACAAGGGAGAGCCTCTACCGTTCTCCTCCAGGCCACTCTACTCGATGACCATGCTCAACTTGTCCCTCTGCTTCACTGGTTTTCGTAAAAAAGATGAAGTGGTTGCTTTGGTTAATCTTGTCCATCACATGGGCGGCACCATCAGAAAAGACTTTGACAGTGCTAAAGTCACGCACCTCATCGCCCGCTCAACACATGGTGAAAAGTACAGGTTGGCAGTGTGTATGGGCACACCCATCCTCACCCCTGACTGGATACGCAAGGCATGGGAGCACAGAGATGACATTAATTTTCACGCAGGCAACGAGCTGTTCCGCACAGAGTTTAAAGTTCCTCCATTCCAGGACTGTGTCCTAAGCTTCCTGGGCTTCTCTgaggaagaaaaaaacaacatggaGGAGAGGACGCAGAAACATGGTGGACGCTTCCAGGCGGTTGGCGATGAAAGGTGCACCCACTTGGTTGTTGAGGAGAACTCCATTAAAGAACTGCCCTTTACTCCCTCAAAAAGACTCTATGTAGTGAAGCAGGAGTGGTTTTGGGGCAGTATACAAATGGATGCCCGAGCAGGTGAATCGATGTACTCTTATGAAAAGCCGGAAAGTCCTGCCATGAAGAAAGCTGTGTCTCTGCTGTCTCTCACGACGCCCAACAGTGGCAGAAAACGACGGCGTCTCCGAGAGACATTGGCTCAGCTTACCAAAGAGACGGAGATTTCTCCCTTCCCGCCACGCAAGAGACCCTCGGCTGAACACTCACTCTCCATGGGCTCCCTGCTGGACATCTCTAACACTCCAGACACCAAATCCAGTGGAGAGAATGCCAAAATCCCCAAAAGCTCAACTCCTGCCCTTCCCAAGCAGTCAGCGCGATGGCAGGTCTCTAAAGAGCTCTACCAAACCGAGAGCAACTACGTTGATATCTTGGCCACGGTCCTGCAGCTCTTCAAATATCCGCTGGAGAAAGAGGGGCAGGTGGGCGGCCCCATTCTGGCTCAGGAAGAGATCAAGACCATCTTTGGCAGCATTCCAGACATCTATGAAGTGCACACCAGAATAAAGGCGGATCTGGAGGAGCTGGTGATGAACTGGTCTGAAGAGAGGAGCGTTGGAGACATTATCCTGAAATATTCTGGAGAGCTGGTGAAGGCCTACCCACCATTTGTCAACTTCTTTGAGATGAGCAAAGAGACCATAGTGAGATGCGAGAGACAGAAGCCCAGGTTTCATGCCTTCCTGAAGATTAATCAGTCTAAACCTGAGTGTGGCCGTCAGACTCTCGTTGAGCTTTTGATTCGTCCCGTGCAGAGACTGCCAAGTGTCGCCCTCCTGCTGAATGATATAAAGAAACACACATCAGATGACAACCCAGATAAATTGACACTTGAAAAGGCCATCGAGTCTCTCAAGGAAGTGATGACCCACATAAATGAGGATAAAAGGAAAACAGAAGGACAGAAGCAGATCTTTGATGTTGTTTATGAGGTGGACGGCTGTCCTGCCAACCTGTTATCGTCACACCGAAGTCTGGTTCACAGGGTGGAGACCATTGCGCTGGGAGATAAACCCTGTGATCGTGGAGAACATGTCACACTTTTCCTGTTCAACGACTGCTTAGAGATCGCCAGGAAAAGGCACAAGGTGATAACAAATTTTCGGAGTCCATTGGGTCAGACACGACCACCTGCCCAGCTCAAACACATCACCCTGATGCCCCTGTCCCAGATCAGAAGAGTCCTTGACATCCAGGACACTGAGGAGTGTCAGAACGCCTTCGCCCTGGTGGTGCGTCCTCCTACAGAACAAGAGAACTTGCTATTCAGTTTCCAGCTGACGGCTGAAGACACCCTCAAAACTACCTGGCTCAGAACTCTCTGCCGTCAGGTGGCCAATACGATCTGTCGAGCTGACGCGGAAGATCTCATTCAGAGCACCGATCCTGACTCGGTCCAAGTGAGCACTAAGGACATGGACAgcacgctcagccgagcatccaGAGCCATCAAAAAGACATCAAAGAAGGTCACACGAGCCTTTTCTTTCACTAAAACCCCCAAGCGTGTGCTTCAGAGGGCTTTTATGGCCAATGGTACCCCAGATGAGAGGAGTCCTTGCCCAGATGCCGATCGCATGAGCCGAATGTCCAGCAGCTCCACACTGGCTATGTCTCGTTCTGCCTCTACGTTCAGTCTGACCGGCTCTATTAAAAGTGCAGTGGTTCAGCGGTCAAACTCTCTGGATCACGCCCCACGGCCCCGAGTCCCGGTGTGTGTCCGGACGCCGTGCAGTCCAGAGAGAGCTGATGAACCAGCGGCCCCCAAAAGCCAGCTGAGACCGTCCATCCTGTCCCTCCCGGCGGTCCAGCCTGTAGCTAAGTGTCGAGATCTGCTGGCACCTCCAGAGCCGGGGCGCAGGTTACCCGGGTCCCCACGGAGAGAGACCCTCCTTTAGGACTCTTGAAaCTGTTCATTCCCCATCCATGATCAACCTCTCCTCTGCCTTTGAGAGAAAGTACCACACCTTCAGTCGATCCACTACTCACCTGATCTGAACTTTGCCTTCTGCACTCTACAGTATTATAATTAATTGGCACACTATGGTACCACGTCCGCCCGGCGCCTCTAGCCCAAGCCACCCCCCCATCCGGGTTTAATTTACAGGTCTAGGACCCACCAAATGAAGGACGGCTTGTGTTGATGTCCACGTCTGGGCGAATTTAATTAACATGGAGAGACATTTATAACTGACATGTTCTGATTTTATTAGATGGTAGAGTTTTCACACGATTATTAACCACTGAATGTATTACTTCCTCGTGTTTTATAAGGTAGGCTTAATCTAAACTAATCTAGTTTTCAGCTTTTATAAAGCTACAGACATCTGGCCGTTGCATTTAAGCTGCCACAGTAAGGTTTATAGCGCAACACTGCATACTTTTAGAATTGATTTTTATTGTTGATTCAGGGGCAGAGGTTTCTAAAAGTCAAAAGAGTCGTTGCAGTCAGCTTTCCATATTTATTCTCTAGAATCAGTTTATGTAAATCTTTCTATTTATGTGTaaatattgtatgttttctttttgTGATTGTGTCATACTAATAGTAGTTTGTCTCCGTTACGTTAGTCTGTGCACTTATGTGAACATTTATTCGTGTGTAAAGGAAAATtcactttttttctgtaaaaggGATTCATATAATGTCCTTGCCTACTGCAGATTTATTTGGAGTGGGCTGGTTTTATGTCATTGGTTTGACTACTTTTGAAGGTGACTTCATTTATTCTTTATCAATAAAAGAAGCTTAAAGCCT

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:2000431 regulation of cytokinesis, actomyosin contractile ring assembly biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0007399 nervous system development biological_process
GO:0032506 cytokinetic process biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040831-2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within cytokinetic process. Predicted to be located in cytoplasm. Predicted to be active in cell cortex and nucleus. Is expressed in midbrain. Orthologous to human ECT2 (epithelial cell transforming 2).

Ensembl:

ensembl_id ENSDART00000081827

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008768 lncRNA downstream 60110 10305130 ~ 10328527 (-) True XLOC_003927
TCONS_00008455 lncRNA downstream 865453 9521226 ~ 9523184 (-) True XLOC_003922
TCONS_00008766 lncRNA downstream 866020 9510569 ~ 9522617 (-) False XLOC_003922
TCONS_00008765 lncRNA downstream 866071 9510569 ~ 9522566 (-) False XLOC_003922
TCONS_00007541 lncRNA upstream 402636 10859024 ~ 10860106 (-) True XLOC_003933
TCONS_00007547 lncRNA upstream 862802 11319190 ~ 11325620 (-) False XLOC_003936
TCONS_00008456 lncRNA upstream 886892 11343280 ~ 11343574 (-) True XLOC_003939
TCONS_00008457 lncRNA upstream 897586 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008458 lncRNA upstream 900505 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00007524 mRNA downstream 403222 9946682 ~ 9985415 (-) True XLOC_003926
TCONS_00007522 mRNA downstream 440150 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007521 mRNA downstream 440150 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007523 mRNA downstream 580281 9808204 ~ 9808356 (-) False XLOC_003926
TCONS_00007515 mRNA downstream 1605766 8635785 ~ 8782871 (-) True XLOC_003921
TCONS_00007530 mRNA upstream 10911 10467299 ~ 10663122 (-) False XLOC_003929
TCONS_00007531 mRNA upstream 80120 10536508 ~ 10634585 (-) False XLOC_003929
TCONS_00007532 mRNA upstream 80120 10536508 ~ 10643091 (-) False XLOC_003929
TCONS_00007533 mRNA upstream 80120 10536508 ~ 10659195 (-) True XLOC_003929
TCONS_00007534 mRNA upstream 213073 10669461 ~ 10798021 (-) False XLOC_003930
TCONS_00007494 other downstream 2262442 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 3272274 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 3440619 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 3606561 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 4182048 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007548 other upstream 869134 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 874337 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 882416 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 911206 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 914067 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

//