RNA id: TCONS_00007531


Basic Information

Item Value
RNA id TCONS_00007531
length 3841
RNA type mRNA
GC content 0.42
exon number 16
gene id XLOC_003929
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10467299 ~ 10663122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACGGCTACCAAACTGCCCAGTCCCGTTGCTCGGTCTGTGGACTGTACTCACAGGGAGCGTCCTTTACTTTGGTGCGCATCTCAGCTGGAGAAATGGAATCCTATCATCGTTTCCTGGGAGTGTGTCTGGAGACTGAATTAGCAACGAGGAGAAATGAGATTATGCAGCAGGAGATCAGGCCGTTGCTGGCTGTCGACATCATTGAACAACTTCACAGGCAGTTTGCTCTTCTTTCAGgAGGAAGAGGACAAGAGGGTTCTCCCATCATCACCTTCCCAGAGTTCTCAGGTTTTAATGAGGTTTCAGATGAGGATTTTATTAATGTTGTCACTTACCTGACCAGCATACCTAGCATGGATGCTGCTAGTATCGGCTTCATCATCATCTTGGACCGAAGGAAGGATAAATGGAACTCAGCAATCGCTTCTCTGGCACGCATAGCGGGCTCCTTTCCAGGAAACCTACAGCTAGTTCTAGTTCTGAAACCTTCGCGCTTCCTCCAGAGGGCCATCGCTGACGTCAGTATGAGGTTACACAGAGATGACTTCAAATTGAAGGTACCGaTTGTTATGCTAAATTCCCTGTCTGACTTGCATGGCTACATTGATAAAGGCCAGTTGACCTGTGACCTTGGGGGAACCCTGGATTATTGCCACAGTCAATGGATTCATCATCGCAcaGCCATTGAGAACTTTGCGCTGACAGTGAAGAGCACAGCACAGATGCTGCAGCAGTTCGGAACAGACCTGGCAGAGACTGAACTTCCCAATGACGTGCAGTGCACCAAAGATTTGCTcatcacacacactgaaaaacacGATAAGCTCAAGgATGAACTAAAATTGGCTGTAAAACAAGGGAATACTCTGCTGTCCTGTATTAAAGACCAGGCCACCAAAGCCGAGAGCCACATTTTGAACCCAGACGAGGTTGAGAACCAAACAACCGTTGAGAGGTTGTTAGCGCAGCTTGATGAGACGGAGAATGCATTTGAACAATTCTGGTCAAGACATCACCTCAAGTTAGAGCAGTGCCTACAGTTACGACACTTTGAGCAGGACTTCAAAGAGGTGAAAGTGTCACTGGACGGCCTCTCTGAAGCTTTGCTGGGACTGTCAGATACCGGGGACTGCGTGGCTCGTGTGGAACAGCTATTAGGAGAACTGAAAACCTTGGAGGATAAAGCTCAGGAGTGTTTGGAGAAAGCTCAGCTTCAAGCTCAGCATGGGGATCAGCTCATTCAGAGTAATCACTACGCCATCGACTCCATCCGCCCCAAGTGTGTGGAACTGCGTCGGATCTGTGACGACTTCAGCAACGAGGCCAAAAAGAAGCGTGACGTTCTGACCAAATCACTTGAAATCCTCAAACGAATTGACGAGGTGAACCAGTGGTGTGAAAGCGGAGTGTATCTGCTGGCCTCTCAGGCTGTAGACAGATGTCAAACACAGGAAGGTGCAGAAGCAGCACTGCAGGACATCGAGAGGTACATGAAAACAGCCAAAGAGCAGCAGCTCAGTCACCTCAAAGAACTCAACAACCAGTATGAGGTCGTCCTCTCAGAGCTGCTCAAGAGCAAAGTTCAAACTGCCTTGAAAACGCTGAACGATGTCCAAGAGATGTTTGAGAAAAGACATGCAAGTCTGAAAAAGCTTTCCACGAAGCAAACAAGGCCTGTGCAACCTGTTGCACCCCGACCAGAATCTTCACCAAAACGCCCCTCACCTAAAATCCCACATCCCACTCCTCCAACATCACACCGCAAAACTACAGATAACTCCAGCACCAATAGACAGCCCAGTGATGCAGAACtggcaaaaagaaaaaacattcgcAAAGCCAAAGGTGGCATTAAGATTGAGGTCATGCATGAAGGAGGTCAAGGAGGTTCAAGTCATATTTTAATGAACAATGAAACTGAAGAGTCGCTTTCAAACAGACGCAGTCACATTATGAATGAACTAATTGAGACGGAAAGGCTGTATGTGGAAGAGCTGCAGAGCATCATAGAGGTACATTAATCTGAACACAGCAAACAGAAAATGGCTAAATTGCAAAACAAAGGGCTTCACACACACTTGTACTATATAGATATGACAATTTTTATACAGTACAAACTATATTTCATCCACCTAttccaacaacaaaaacacaattcTCACAGTTAGGGATCTGCATTTTTACTTGTTCAGAATATTTCATTATGTGTCATTCATGAGCCATTTTCCTCATAAGGACAAAAAGGTCAAAATTTACCAGTATTGCTATACATGTGAGGACATTTGGTCTTCACAACATTACAAAATACtggtacacacatgcatgcttGTTCTTATATCCCAGAAGGGACATTAGACGTAATAATGTTTATGCTACAAtttgtcacggtggcgcagtgggtagtatgttcacctcacagcaagaaggttgctggtttaagcctcggctgagtcagttgccatttctgtgtggagtttgcatgttctccccgtgttcgtgtgggtttcctccaggtgctccggtttcccccacaagtccaaagacaagcgctataggtgaattgggtaagttaaattgtccgtagtgtatgtgtgtgactggaagtgtatgggtgtttcccagtgatgggttgcatctggaaggggatccactgcgtaaaacatgctggataagttggcggttcatgctgctgtggtgacccccagattaataaagggactaagccaaaaggaaaatgaatgaatattgtatatTGTTCTAACTGCTACTCTTAAACCCAAACCTAACAAGAAacaatctgtatttttattttaacatttttttaaatatatttaatcatgTGCGATTTACAAATATGTTTACCCAAGGGCTCCTTAATTTAGGTCATAGTGACACAAGTTCCCACAAGTCTGTGTGGATTCATGTTTAAGTCCCCACTAtgatataaaaacaagtaaattAGAGTAGTCAAACTAAATGTTTGAAGTGTAGTATTTGCTTAAAAATACAGATCAGGAAATGTACTTGTCAAGTAAATAAAGTTTATTGTAGGTAAGTTAACCACAGCTGAAGATACACATTTTAAAGGGtgtcattcatattatttatgtaCATAGTGATTCAAGCTTTCATGCTGACTTTCATTCACATTTAATACATCAATTACTAAAGATgctttattaattatatacaattttaggttgttttaattaaatcattgtCACCCTTTTCTAGTAAACAGATCAAACAGTGTTCAAAACAATGTAAATCTCAAAACATACATCAGCTGTAAAGGCAAGAATGTTTTTATGGTTTTGGCTGTGTTTGTTTTGGTGTGCTTTCTGCAGGGCTATGCCGCGGCACTCGATGACCCAGAACTCATCTATCTGATCCCACCATCCCTGGAAAACAAGAAGGAAGTTCTCTTTGGAAATCTGCCAGAAATTTACCAATTCCACCAGAAGTAAGGAAACTGTTTTTGGCACCAGTACTGTCATTTCCACCTAAAAGGCATGCTGTTACAGTAGGTTTCCATCTGCTCAGAATTAGTCATTGCTTAATCTGAAGTGTTTCATGTAAAGAGAATGACTTGTTAGAGTTTATTCTTCCTTTATTTCGGAAATGTAGCCAGTTTAAATTAAGCTTTTGAGATTACAGCTATGCAGAAGAGTATAGTATATTCGCTCATGCTTAGGATGCTGTAGGCTTTATTAACAtcaatttattacagtttttgtcaattaattaattttcctaaaAAGTTTATTAGGTTTTAATaggttaattaaaattattaggtgtataaatttgaataaatattcacaaaatatttatatt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100812-1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Orthologous to human MCF2L2 (MCF.2 cell line derived transforming sequence-like 2).

Ensembl:

ensembl_id ENSDART00000192424

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008768 lncRNA downstream 207981 10305130 ~ 10328527 (-) True XLOC_003927
TCONS_00008455 lncRNA downstream 1013324 9521226 ~ 9523184 (-) True XLOC_003922
TCONS_00008766 lncRNA downstream 1013891 9510569 ~ 9522617 (-) False XLOC_003922
TCONS_00008765 lncRNA downstream 1013942 9510569 ~ 9522566 (-) False XLOC_003922
TCONS_00007541 lncRNA upstream 224439 10859024 ~ 10860106 (-) True XLOC_003933
TCONS_00007547 lncRNA upstream 684605 11319190 ~ 11325620 (-) False XLOC_003936
TCONS_00008456 lncRNA upstream 708695 11343280 ~ 11343574 (-) True XLOC_003939
TCONS_00008457 lncRNA upstream 719389 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008458 lncRNA upstream 722308 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00007525 mRNA downstream 79955 10388303 ~ 10456553 (-) False XLOC_003928
TCONS_00007534 mRNA upstream 34876 10669461 ~ 10798021 (-) False XLOC_003930
TCONS_00007535 mRNA upstream 38094 10672679 ~ 10798064 (-) False XLOC_003930
TCONS_00007536 mRNA upstream 48694 10683279 ~ 10798064 (-) False XLOC_003930
TCONS_00007537 mRNA upstream 51041 10685626 ~ 10770053 (-) False XLOC_003930
TCONS_00007538 mRNA upstream 51041 10685626 ~ 10798064 (-) True XLOC_003930
TCONS_00007494 other downstream 2410313 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 3420145 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 3588490 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 3754432 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 4329919 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007548 other upstream 690937 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 696140 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 704219 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 733009 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 735870 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

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