RNA id: TCONS_00007511


Basic Information

Item Value
RNA id TCONS_00007511
length 4456
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_003919
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8303941 ~ 8350945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaggatgTGGCCCAAACCTCAACACTTTACCTACAGTATCCCTCATTGAAacatgagcaaatcatactaaactgttcaaaataataataataaatcctactaaatcaaaatgttaaatgTTGGATCAAATCAAGATAGCATTGCAAACTGATCATTGAAATAAATGGCTTTTCCTGTACAGCAACTCAAGTGCAGTTTTTCGATTCACATTGACGTTTCCAGTCAAACGCTCTATAGTCTCCACAAAAAGCACATGCTGTTGATCTCACACCATTTTACCGACATGCGTCAGCCAGAACTAGACAGCATTTGATGGCATGAGTGAGTGAGCAGTCATTCAGTCGCAAGCGTGTAGTCAAAAACACCTGTGTCACCTTCATTCTCCAGAACTCTCCATCAACACCAATCAGCAGCAGGGTtcaggaagaggaggaggaggcttTGAATgcctctcttgctctctctctctctctctctctctctctctctccgccaGGACTAAAGAAAAGGATCAATGCTGTGAATGGTCGCTCACTACTCTCATTATTATTTTCCAGCCTGCCACTTGCCAGCCCATGAATAGTCAATAACAAACCAACAGGCAGGAAATGAAGAAGCAGATGCTCAGTTCAGTGCCTTGTGTGAGTTGTATTTACCACGTGAGACGGACTTGCTTCGCAGCTGAGGATTAcagaaacttttttttctctctctttttgatGGATTCTCTGGATTTACTCTGTTTATCAGCAACAATGGAGTCGTTTGTTTGATTCTGTGATCTGCGATGTAAACTCACTAAAGACTGTGTGCTGTTATAAAGAAAGACATTCATCTTTTTGTACTTTTAAATAGTGTGttgaagggtgtgtgtgtgtgtgtgtggagggaaGCACATGGTGGACTAAGAGTGTGTTTTTGGCATCAGGTCGCACCACCAGCAGTGTTTTGCAAGTGCTTAAGAGAGAGACGGTCACTGTGGAAGAGCGGGGAGAATGTTTCTGTGGGCTGGAAGCAAAGCAGCTCAAGGATCAGGAAGTGAGAGAAGGACGATTTATCAGAAGATTCGAGAGTATGATATTTTGGAGAAGAGGAGGACGGTGACCGCGCTGAAGGCTGGAGAGGACAGAGCCATTCTCTTAGGCCTCAGCATGATCCTATGCTCCGCCATGATGTACTTTGTGTTGGGCATCACAATGGTGCGTTCTTACTCAGACAGTGTTTGGACAGAGGAGTCAAACTGCACAGTGTTGAACTCGAGTGTAGTTGCTGAGATTAACTGTAGCTACAGCTGTGGTTCAGAGTGCCGGAAAAGCTCCAGGTATCCCTGTCTTCAAGTGTATGTCAGTTTGGACTCTGGTAAAGTTCAGCGGCTCTCATACAACGAGGAAGCGCATGAGGCCAATCCTGAGTGTTTTTACATCCCAAAGTGCCGAAAGGAGCAAACACTAATGCACACCATAGTGATGAACATCTCGGAGCGGCTCAAGATGCACCAGCAGGTTCTGTGTTATTATGACCCCTCAGAGCAGCAGGACGGCGTACTTCTGACACGTCTCTACGGCCGCGGAGCGATCATCAGCTCGCTCCTTTGGCCCACATGCACCCTTGTCGGGGGAACGCTTATCATCGCAATGGTGAAGCTCACTCAATACCTGTCCTTCCTGTGCGAGCAGATCAGCCGCATTAAAAGGTGAGACTGACGGTGTGCAGATGGATACTTCAAGCCAGAGAGACTGATGCTTGTTAAGAAACATCTAATCGCTCTGTTCTTTGCAGGATGGGGCTTTACTCCTTAAGAGGAGCTTCTCATGCTCAGGTCTGCACCCGGAAGTTTAACGGCGGCATCCAGGATGTGGTTTGATATGCGAATTTGGACCTGTCTCCTACTCAACAAAGTGTTTTGCCTGTTATGTTGTCTTCCTCCTGCTTTGTCCATCTGTCCGGGTTGTGCTGACAAGGATggagtatttttatttgtatttttttgtgaatGAAAACTTCTTGAGGATCAATAGAGCCCCTAGTATTTGGAACTTCATGCTACCAGACTGGGTCAAGTCTGATTTTGAAACTCAAGGGTCAAAATCTGTGGTCATGTTGTGGGGTGTTGATTACACTTTTAGACCACCGGATTGCAGAGAGTCCTTTCCAAGAAGATGCCACTGTGTAGGAATAGGTCTCGACCAGTTGGCTTGAATGTAATCATGGAAATTAATAGTATGCTTTGAACACACTACTTCAAACAGAAGTGACGGCTGTCATTCATGGCTCTTTGACAAACACTTGTGGAGTACTTCAGAGCCAAAGTCATTTGTTGCTTGTTACAGTGTatcttttaaagggcacctatggtgaaaaatctacttttcaagctgatGGGACAGACAGGTGTGTAAGTATAgagtatagaccatcatattggggtgatataaacacaccctgtccttttttcaatttaacaacataaaacgaTGGAGCAATTGGAATGGTTAtaagatcgaccgcaacttgatgtaggagtgcggtccccctgcACACCAATATTGAATGACAGACGTGCATCACcttatcctcagtttgttgtttcacttccgccattttcagcgtgtgactcaaagcgatgtcaccaaaggaacacccttgctctatttttagatgtaaggctcattgggctcaacacaagatcaatattcaccacatgatcactctaatcggaattattgttttTAACTTTAGGttgggtttgcaaacatgtgtacttttcattgcgtctaccttaaattttagctgtttgcatttctcgctatcacagaagctccctgtgatcttaactaggtgtaGCTGGAAAGTGCGAGCGAGCCTCACATGCgtgtccctccattggaaataaaataacatcatgcaatgcagcgccatgcattttagaattctaaacataggtttctatccgCAGCGCCCCGCCACGACTTAGGACACATCATATTTCTGCCAAGCCACATAGCACCATCGGCtaaatgctggtcctctcactcatgttgcttctctctgtcttcctgtctgttgccaaacacaaagCGGGGGAGCTTTTGGCTCCGCctccttgttacgttgggcgggaagtcgaAACAAATATTCATGTAAAGTAACATGCCCCTAAAACAACCccctgtgtacacgcccccaaaatgacacttttttaaacacattataataaaataatttaaattgtgttttgaactgaacctaaactggcaaaCTCAGAAAAACCATATTGGaaatattaaatctttaaaaaggggtaaactatgtgccctttaaaggaatagttcagaaAAAATGTTAATTCTGTCTCATTTACTCGCTGTCATCTCACTGATTATCTTGTGtggaacacaaaatatattttcaagaATATTTACTAAGGCCATGTCCACATGTACACAGGTATATTTATAAATAGGGTGTTCCCCACTTtcgtatttttttgtaatttgtccTTAAAAATGCAAAAACGCACTATGATGCATTTTAAGGGTACAGTAAATCAACAGGAGGTGATAATGACACTTTGATACTGGGTTCACTCCAAACGGGAAATTAAGTATTTGCATGAATAAATTgcatacaagtcaatgcaaaAACATGAGAAACAGAGGCGGGTTATCATGCCACAGACAAACGACACAAAATATGGGATGCATTTGATGCGATTTTAGGATTTTTGCCTCATTTTTATCTTCCGCTTTTGGCGTGAACCCAACCATgatggccaatcagaaaggaaaaacaaacaaacaaaaaaaacagctcaTGTTGACATCATGAGGTGAAACCTCCAGTTGTAGTGtccacgtgaccacaatgtacccaGAGTTATGAAATATTTACATCGAAAGAAAGTTTCGGTTTCAGTAAGTGCAGTTTTGTATGAACAAAAAGCGAAACAGACTACAAAAAAGtgctgttttgaaaatgtatctGTTGAAATGACCCATGTTCGTGTGGACAGGGCCTTGTATTATActgagaaaaagtaaataaaaacccTGAGGAGGGTGTTCATAGTCTCttgaaaaaatgtatatgtgtcTTAGTCATTAATTGACATAAGAACAGCATTTTGGGGCttgaaaatgctaattaattGAAGTGTAAGTTTCTTATGATGCTACTGTTTATAGTGTTGATAAAagatttatatatacattaaagctgaaatatttgaaaagatacCATGTCTCTCTTTCTGAGATTAATGATCTCTCTTCATACTAAGCCAATATTTTGAACTCTACTCAGATTGTTGGGTCTGGCCAATTTCAATATTAATGTACAAAACTGCAACAGAAACAAGCAGGTAAATGTGTtgttatatgtgtgtttttttgtacTCCTGCACTAACTTGAACTGATAAATGTAAAATCATGTTAAAATACACTGCTATGCAAGCAC

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-101 Predicted to enable calcium-activated potassium channel activity. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hypertension. Orthologous to several human genes including KCNMB2 (potassium calcium-activated channel subfamily M regulatory beta subunit 2).

Ensembl:

ensembl_id ENSDART00000160570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007510 lncRNA downstream 18049 8284885 ~ 8285892 (-) True XLOC_003918
TCONS_00007508 lncRNA downstream 35605 8267161 ~ 8268336 (-) True XLOC_003916
TCONS_00007504 lncRNA downstream 62739 8240025 ~ 8241202 (-) True XLOC_003917
TCONS_00007501 lncRNA downstream 80889 8221872 ~ 8223052 (-) False XLOC_003916
TCONS_00007499 lncRNA downstream 99082 8201885 ~ 8204859 (-) True XLOC_003915
TCONS_00007513 lncRNA upstream 156093 8476961 ~ 8515378 (-) False XLOC_003920
TCONS_00008761 lncRNA upstream 156157 8477025 ~ 8515693 (-) False XLOC_003920
TCONS_00007514 lncRNA upstream 162951 8483819 ~ 8515378 (-) False XLOC_003920
TCONS_00008762 lncRNA upstream 162969 8483837 ~ 8515748 (-) False XLOC_003920
TCONS_00008763 lncRNA upstream 162969 8483837 ~ 8515750 (-) True XLOC_003920
TCONS_00007509 mRNA downstream 15016 8284686 ~ 8288925 (-) False XLOC_003918
TCONS_00007507 mRNA downstream 32567 8267118 ~ 8271374 (-) False XLOC_003916
TCONS_00007502 mRNA downstream 34714 8222220 ~ 8269227 (-) False XLOC_003916
TCONS_00007515 mRNA upstream 314917 8635785 ~ 8782871 (-) True XLOC_003921
TCONS_00007522 mRNA upstream 1243286 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007521 mRNA upstream 1243286 9564154 ~ 9948487 (-) False XLOC_003926
TCONS_00007523 mRNA upstream 1487336 9808204 ~ 9808356 (-) False XLOC_003926
TCONS_00007524 mRNA upstream 1625814 9946682 ~ 9985415 (-) True XLOC_003926
TCONS_00007494 other downstream 177746 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 1187578 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 1355923 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 1521865 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 2097352 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007548 other upstream 3004654 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 3009857 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 3017936 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 3046726 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 3049587 11370455 ~ 11370653 (-) True XLOC_003943

Expression Profile

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