G2079693


Basic Information

Item Value
gene id G2079693
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37851007 ~ 37936371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2378040
cgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgatcgttgtcctatggacagagtctcccagctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttcaccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctcctttggatgtttaaaacttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttgacggacctctgagactatcatagtgcaggtgcatttatacggagacttgattacacacagatggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttg
>TU2378039
ctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgaaatttgattcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2378040 False 721 lncRNA 0.43 2 37851007 37936371
TU2378039 True 536 lncRNA 0.42 2 37860811 37936371

Neighbor

gene id symbol gene type direction distance location
LOC110508012 LOC106581399 coding upstream 282134 37536529 ~ 37568873 (+)
trnat-agu-152 NA coding upstream 345205 37505729 ~ 37505802 (+)
trnat-agu-151 NA coding upstream 345373 37505561 ~ 37505634 (+)
mre11a mre11a coding upstream 493401 37318716 ~ 37357606 (+)
LOC110536894 NA coding upstream 575925 37031161 ~ 37276857 (+)
LOC110508017 NA coding downstream 116262 38052633 ~ 38060113 (+)
LOC110507217 NA coding downstream 533547 38469918 ~ 38474599 (+)
LOC110508002 LOC106581401 coding downstream 683179 38619550 ~ 38628170 (+)
LOC118944799 NA coding downstream 1103202 39039573 ~ 39039625 (+)
LOC110508028 neus coding downstream 1731618 39667989 ~ 39681560 (+)
G2079690 NA non-coding upstream 6675 37843857 ~ 37844332 (+)
G2079661 NA non-coding upstream 26982 37822169 ~ 37824025 (+)
G2079657 NA non-coding upstream 31721 37815848 ~ 37819286 (+)
G2079656 NA non-coding upstream 73719 37737520 ~ 37777288 (+)
G2079643 NA non-coding upstream 133446 37717080 ~ 37717561 (+)
G2080048 NA non-coding downstream 38946 37975317 ~ 37975666 (+)
G2080062 NA non-coding downstream 47905 37984276 ~ 37984761 (+)
G2080064 NA non-coding downstream 49050 37985421 ~ 37985811 (+)
G2080074 NA non-coding downstream 63930 38000301 ~ 38000538 (+)
G2080080 NA non-coding downstream 72300 38008671 ~ 38008877 (+)
G2079468 LOC106581367 other upstream 482871 37366739 ~ 37368136 (+)
G2079197 NA other upstream 570175 37279105 ~ 37280832 (+)
LOC110508005 LOC106613226 other upstream 1411653 36438225 ~ 36440709 (+)
G2080014 NA other downstream 8561 37944932 ~ 37945151 (+)
G2081884 LOC106581433 other downstream 1891287 39827658 ~ 39837383 (+)
LOC110507223 LOC106613251 other downstream 1959296 39781189 ~ 39938079 (+)
G2081949 NA other downstream 1995503 39931874 ~ 39933835 (+)
G2082162 NA other downstream 2020844 39957215 ~ 39957751 (+)

Expression


Co-expression Network