G2080138


Basic Information

Item Value
gene id G2080138
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 38063663 ~ 38064691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2378562
acagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagggatgggaagagggatggggagagagaaagtgagagagggatggggagggagaggaatggagaaagagaggaatgggtagagagaaagagagagggagagagatagggatgggGAGAGAATAAATGgggtgaatttaagtgtgctctctctaattctcgctttctctctttctttctctctctcggaggacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgccttattattattattggaccatgctggtcatttatgaacttttgaacatcttggccatgttctgttataatctccacccagcacaaccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctatacagcactttgagatatcagctgatgtacgaagggccatataaataaatttgatttgatttgatttgacttgagaGGGACGGTGACGTTAACATGTGAATAGCATTTCAGCACcttggagagggaaggagtagtTTGTCAAACAAAAATATCTGATTTCGCACGAGGACGGAGAGATAGAGTGAGCGTAGGGGTTGACCCCCTAACTTCAGGTTTATGGTGTTCAGACATAGAACCAATctctgtttatcattcagcagaGGCTCTCTCCCATTGGAGAAGAGCACACAATAGATACAATATTTTGATGGAAGCAGAAAACGCACTGAAGGGCATGTTGGGAGAATGGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2378562 True 1029 lncRNA 0.48 1 38063663 38064691

Neighbor

gene id symbol gene type direction distance location
LOC110508017 NA coding upstream 3550 38052633 ~ 38060113 (+)
LOC110508012 LOC106581399 coding upstream 494790 37536529 ~ 37568873 (+)
trnat-agu-152 NA coding upstream 557861 37505729 ~ 37505802 (+)
trnat-agu-151 NA coding upstream 558029 37505561 ~ 37505634 (+)
mre11a mre11a coding upstream 706057 37318716 ~ 37357606 (+)
LOC110507217 NA coding downstream 405227 38469918 ~ 38474599 (+)
LOC110508002 LOC106581401 coding downstream 554859 38619550 ~ 38628170 (+)
LOC118944799 NA coding downstream 974882 39039573 ~ 39039625 (+)
LOC110508028 neus coding downstream 1603298 39667989 ~ 39681560 (+)
LOC110507222 LOC106581437 coding downstream 1629870 39694561 ~ 39701212 (+)
G2080133 LOC106562215 non-coding upstream 12974 38050331 ~ 38050689 (+)
G2080119 NA non-coding upstream 22187 38041158 ~ 38041476 (+)
G2080080 NA non-coding upstream 54786 38008671 ~ 38008877 (+)
G2080074 NA non-coding upstream 63125 38000301 ~ 38000538 (+)
G2080064 NA non-coding upstream 77852 37985421 ~ 37985811 (+)
G2080139 NA non-coding downstream 581 38065272 ~ 38067033 (+)
G2080164 NA non-coding downstream 26275 38090966 ~ 38091176 (+)
G2080197 NA non-coding downstream 55766 38120457 ~ 38121045 (+)
G2080275 NA non-coding downstream 112723 38177414 ~ 38177666 (+)
G2080330 NA non-coding downstream 158664 38223355 ~ 38223567 (+)
G2080014 NA other upstream 118512 37944932 ~ 37945151 (+)
G2079657 NA other upstream 244377 37815848 ~ 37819286 (+)
G2079468 LOC106581367 other upstream 695527 37366739 ~ 37368136 (+)
G2079197 NA other upstream 782831 37279105 ~ 37280832 (+)
LOC110536894 NA other upstream 786806 37031161 ~ 37276857 (+)
G2081884 LOC106581433 other downstream 1762967 39827658 ~ 39837383 (+)
LOC110507223 LOC106613251 other downstream 1830976 39781189 ~ 39938079 (+)
G2081949 NA other downstream 1867183 39931874 ~ 39933835 (+)
G2082162 NA other downstream 1892524 39957215 ~ 39957751 (+)
LOC110508042 LOC106613262 other downstream 2778823 40840706 ~ 40847141 (+)

Expression


Co-expression Network