LOC120571013


Basic Information

Item Value
gene id LOC120571013
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 11119952 ~ 11127420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641205.1
gcagcacatggtgctctgtacccggcttacagtcacctattctcgggtaattgaaccaccaactaccgctgacctggcGGAGCACCGTAGCCGGTGTCGCAGAGCTCTCTTgcggctaaacacatctactaactgccgcTGACATGACGTGCTGTGACAGAGgtctgtagccggcgtcacgaagctctgtagcggcgTTGGTGTatctgttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgttgttatgaaGGGGATGGTGCCCTTGTGCCTATGAAGTCTGCACACAGTGGACCATTCTGACCCACATCTCCCTCCTTATCCAAAACatgtcctccctccctccctccctccctccctccctcctaccTTTGTCTTCCTCCCTTCTTTCCTCCACccctccatctgtctctctgttgacTCAGTCTTGTCCACAGTTGCTTCGCTGGCTCCTCCAAGGCAATGGCTGaaagcaaacaacaacaacaacaacgacaaACCACTGACAGCACGAAGAAGATCACAACTGATACGCCTGAAAAGCCGCTTCGCACCATGAAACCTATTGAGGCCTTGTAAAGGACGGCCGGGCACCAAGAGTGCACGGGAGGAATAAAACGATGGGGGAGGCTGCAAGGAGAGCAAAGGAGTGAGAGGCAGTCCTCAGTTCAACTGGAAGTTGCTCTGTCCCTCCTTCATAGAgaccgtctcaaagctcttattttctgccccgaggagcgAGCATCAAGGAGGGATCTCCGAGGAGCTATTAGCGAGGATCGCccaggagctatgagcgaggatacacgagagcagcttTTCCGTAACTCTGCCCATACAGCTGAAACATTAAAAATCTGATGTTTATTTTCCTTTACCCACTTTGTCactgtatccacattattggtgattatttat

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641205.1 True 918 lncRNA 0.52 3 11119952 11127420

Neighbor

gene id symbol gene type direction distance location
mfng LOC103362872,LOC102307749,LOC101485425 coding upstream 619 11085493 ~ 11119333 (+)
trmt1 trmt1 coding upstream 97833 10996728 ~ 11022119 (+)
LOC120570847 stx10,LOC102798899 coding upstream 167721 10936550 ~ 10952231 (+)
cacna1ab cacna1a coding upstream 219228 10677339 ~ 10900724 (+)
wdr83os wdr83os coding upstream 457721 10655186 ~ 10662231 (+)
LOC120569250 LOC103136458,LOC106522476,LOC103368092 coding downstream 62362 11189782 ~ 11495847 (+)
lgals2b LOC108231364 coding downstream 559558 11686978 ~ 11692071 (+)
LOC120573162 NA coding downstream 1004424 12131844 ~ 12136341 (+)
grap2b NA coding downstream 1019844 12147264 ~ 12156380 (+)
fam83fb NA coding downstream 1031882 12159302 ~ 12173782 (+)
G3607 NA non-coding upstream 42892 11076853 ~ 11077060 (+)
G3600 NA non-coding upstream 69130 11050086 ~ 11050822 (+)
G3530 NA non-coding upstream 96344 10926980 ~ 11023608 (+)
G3507 NA non-coding upstream 165016 10906305 ~ 10954936 (+)
G3527 NA non-coding upstream 228322 10891304 ~ 10891630 (+)
G3624 NA non-coding downstream 157664 11285084 ~ 11285418 (+)
G3626 NA non-coding downstream 342162 11469582 ~ 11469817 (+)
G3660 NA non-coding downstream 392264 11519684 ~ 11520617 (+)
G3663 NA non-coding downstream 401736 11529156 ~ 11529446 (+)
G3669 LOC103371799 non-coding downstream 540134 11667554 ~ 11675358 (+)
LOC120559244 NA other upstream 660664 10320573 ~ 10459288 (+)
G3115 NA other upstream 728607 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 856979 10255444 ~ 10262973 (+)
LOC120559251 NA other upstream 952338 10123099 ~ 10167614 (+)
LOC120559494 LOC103359075 other upstream 987810 10098689 ~ 10132142 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 1069226 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 1177290 12304710 ~ 12322209 (+)
mgat3b mgat3,LOC103374702 other downstream 1403209 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 1558580 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 1665385 12792805 ~ 12796367 (+)

Expression


Co-expression Network