G3530


Basic Information

Item Value
gene id G3530
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10926980 ~ 11023608 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4912
ATTCTacaaaataagattttttttattattattataaattggATAGACTATTGTGAGGTAACATTTCTTTGGGGTAGTTATATATTTGATCGCATAAAAGCAAGTTTCATATAAGAGATAATATACAACAAAGTCCAAATTCGGTCTTAAAATAGACTTTCACGACAACAAGAGCAAGGCAGATTCGTTGCGCAATGTTGAAGGAAGTGTCGTAATGGGAGGTATTAGAGTGACTTTGTGAATAtgagaaggagaaaaagaaacgCGTGGAGTGAGATTATGTCAGACATGTTTACATtctggaaacaacaacaaaaaaaaaagccagcagCAGTTCGAAGAATTTACGTGGGAGAAGGTGGCTCCAATTTCTGGAGTTTctgctctcactctctctctctctctctctctctcacacacacacacacacactcagCAGAAATACAAAAGGTTACACATATTGCACACGTCAGGCAGTCAGTACAAGTCGGCACCAGTTTGATTCGTAGACAGAAAAAGTAAGGATTTGTGATTGGAAGTGCGTGTGCTGAAAAATTCAGATAAATCTTTGAAAAAGTCAAGTTTTAGAGTTAAAAAAACCAATGTCTCAGGGTCAGTTTTAGAGGGATTTAGTATCATCGGTGTGTCTGCGATACTTCAAAAGGTAGCGTCAGCTAATTCTGTACATCCTGTATGTCTCAGAGGAGAAGAACGTTCAGCCATTCAGTGTCACTAAGTGGGAAATAAtcatcttttctttctttttattatttctgtgGACAGCCATGAGGAAGAGAAAGGCTTTTTCTTTGGTTACAACCCATTCAAAAATCACAGCTGTGTTTCCAAAAACATCTCCAGATCGGTGTGTGTTTGCACTCAAaatctttttttggttttgtaaaCAGAAAGCCTTTCCATCCTTTCTCAGATGTCCAGAACATTTTCTAACTGGTGTAGAACTGTCCTCGCGTGATCCAATCAAACGCAGGCGAGAGGCCACAGGAACTTGGATTGATTTGAAATTTGCGTCGCTCAACTCATTTGCGACGtcttgtaaaacaaaaacaaaaaaagtgaagGCGTGCGATCGGCTATCTGAAGCTGACCCTGAGCAGGAAGGTTCGGATCTCCATTGGTCTTAAAGTCACCTCCCATACGGAGGCGTCTGGGAACGCCTTCAGCAGCGGCTTCGCATCTGGAGAAGAGACAACGGCATTAggaaaaatgcacaaaaacaaGAGATAATTTGGTAacgctttacttgaaggtacCTACATAAGAGttacatgacactgtcatgacacacgAACCTTAACACTAAAGCGtgaattatatttttgttttttctttcggAAACCGGAAGCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4912 True 1370 lncRNA 0.40 2 10926980 11023608

Neighbor

gene id symbol gene type direction distance location
cacna1ab cacna1a coding upstream 26256 10677339 ~ 10900724 (+)
wdr83os wdr83os coding upstream 264749 10655186 ~ 10662231 (+)
LOC120565892 LOC104935002,LOC106525101 coding upstream 280890 10645251 ~ 10646090 (+)
LOC120567770 NA coding upstream 293592 10631779 ~ 10633388 (+)
LOC120565884 NA coding upstream 433086 10474106 ~ 10493894 (+)
mfng LOC103362872,LOC102307749,LOC101485425 coding downstream 61885 11085493 ~ 11119333 (+)
LOC120569250 LOC103136458,LOC106522476,LOC103368092 coding downstream 166174 11189782 ~ 11495847 (+)
lgals2b LOC108231364 coding downstream 663370 11686978 ~ 11692071 (+)
LOC120573162 NA coding downstream 1108236 12131844 ~ 12136341 (+)
grap2b NA coding downstream 1123656 12147264 ~ 12156380 (+)
G3527 NA non-coding upstream 35350 10891304 ~ 10891630 (+)
G3526 NA non-coding upstream 36352 10890336 ~ 10890628 (+)
G3525 NA non-coding upstream 41682 10884890 ~ 10885298 (+)
G3516 NA non-coding upstream 57113 10869659 ~ 10869867 (+)
LOC120559544 NA non-coding upstream 477053 10446927 ~ 10449927 (+)
G3600 NA non-coding downstream 26478 11050086 ~ 11050822 (+)
G3607 NA non-coding downstream 53245 11076853 ~ 11077060 (+)
LOC120571013 NA non-coding downstream 96344 11119952 ~ 11127420 (+)
G3610 NA non-coding downstream 97646 11121254 ~ 11122462 (+)
G3611 NA non-coding downstream 98978 11122586 ~ 11123257 (+)
LOC120559244 NA other upstream 467692 10320573 ~ 10459288 (+)
G3115 NA other upstream 535635 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 664007 10255444 ~ 10262973 (+)
LOC120559251 NA other upstream 759366 10123099 ~ 10167614 (+)
LOC120559494 LOC103359075 other upstream 794838 10098689 ~ 10132142 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 1173038 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 1281102 12304710 ~ 12322209 (+)
mgat3b mgat3,LOC103374702 other downstream 1507021 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 1662392 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 1769197 12792805 ~ 12796367 (+)

Expression


Co-expression Network