trmt1 (trmt1)


Basic Information

Item Value
gene id trmt1
gene name trmt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10996728 ~ 11022119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794903.1
GCGGGCAGCGCTTTTCCCAACTCTTCACTAGGCCTCGCGGGTTTCCGTAGAGACGCTCCAAACATGGCTGCCTCCATGTGCTAACGTGAGAGTAAACTAACcgaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagcgaGGAGTTTTCAGTCGCTCGCAAGACCCCATCGCCTTTATATTTACCCTAACCCTGACCATTTAGAAAACAAGTGTCCGCCTTGAGGGAAGGTGTCACAGGCGCTGTACCTTTATGCTGGTGCGGACAGCTCGGCACTTCCCCCTCATCATCTCCCATCATCTGCATCCTTCCCGCACTCGTTCTGCCACACAGACGTTTCAGTTGAGCTTAGGCATTGCTGCTGCCGCCAGCAGGGGGCTGAGATCCATGGAGCACCTAAAAACTGCCCCCGAGGTTCCCACCACCAAACCTCCTCCCACGACTGCCGAATCTTCAGCAGAAGATACGAGCCTGGCACCCACGGACACGACGGCTGACGAGGAGAAGCCGCTTCCGGCAGGACTCCTACCTGGGGAGACAGTGGTCAAGGAGGGCAAGGCGGCCATCTTGTTCCCCAGTGCTAATGAGGTCTTTTACAACCCAGTCCAGGAGTTTAACAGAGATTTGACATGTGCTGTGATCACAGAGTTTGCCAGAGATCTGCTGGCCCAGCGCGGGGTGAAGGTGGTGGTGCccggagagaaagagagggtggTGGTGTCTCTGTCAGAGGAGACCAACGAGGACGACGCACAGACGGAGGAGAAAAACGGAGCAGAGTCTCCAGCAGTAACCGCAACAGTGGGGGAGAAATGCGAGCGTGGCCTTCGCGTGCTGGAGGGTCTGGCGGCGTCCGGTTTGCGCTCTGTGCGTTTCGCTCTGGAAGTCCCGGGCCTGCAGAGCGTCACCGCCAACGACTTCTCCACCAAGGCTGCGGCGCTGATCGCCCGCAACGCCCAGTACAACGGAGTGAGCCACCTGCTGGAAGCTAGCTGCAGGGACGCCAGTATGCTGATGTATGAGATGCGAGGGAAGAAGGAGCGTTTTGATGTAATCGATCTGGATCCCTACGGGAGCCCCGCTTCCTTCTTGGATGCCGCCGTGCAGGCCGTCAGTGAGGGAGGTCTGTTGTGTGTAACGTGTACAGACATGGCGGTGATGGCAGGAAACAGCGGAGAGACCTGCTACAGCAAATACGGTTCGGTCTCCATCAAAGCCAAATACTGCCATGAGATgGCTCTTCGTATCATCCTCCACAGTTTGGACCAGAGGGCGGGGGTGTACCAGCGCTACATCCAGCCCCTGCTGTCCGTCAGCGTCGACTTTTACATCAGGGTCTTTGTACGCGTCTTCACAGGACAGGCCATGGTCAAAAACTCAGCAAGTAAACAGGCTCTGGTCTACAACTGTGTCGGCTGTGGCTCTTTTCACCTACAGAGAATGGGCAGGAGAACGAGCAATGGAAAACATATGAAGTATTCTCCTGCTGCCGGACCCCCAGTTGGACCAGAGTGTGAGCACTGTGGACAGAGACATCagCTGGGGGGTCCTATCTGGGCAGAGCCCATCTATGACTTGGCATTTGTCCAGAAGGTTTTGTCTGCTGTGTCGGGGAACCCGTCCCGATTTGGGACGTCCAAACGCATTGAGGGTATGCTCAGCATGGTGACCGAGGAGTTGGAAGATGTGCCTCTTTATTACACTATGGACAGTCTGAGCAGCACGATACACTGCAGTACTCCGCCCCTGCTCCAGTTTAAgtctGCTCTCCTTCATGCAGGCCACAGGGTTTCCCTCTCTCACGCCTGTAAGAATGCCATCAAGACAGATGCTCCACCTGCAGCTATCTGGGACGTCATGCGATGCTGGGAGAAGGCCAATCCTGTGAAGAGGGAGAAGCTGTCGGAGACGAGCCCCGCTTTCAAGATCCTCTCCACAGAGCCCAGctTAGAAGCCTGTTTCACTGTGAGGGAGGACGCCAACCCTCAGTCCCGTAAACGCCACCTGACCCGCTTCCAGGAGAATCCGCAGGCCTTCTGGGGACCCAAAGCTCGAGCCAAAGCTGGTGGCGGTATCGCTACTAACCTGCAGGACAAGAGGAAGAAGTGCCAGAACAAGAGGAAGAACCAGATCACAGACTCCTCAGAGGTGAAAAACTTTCACTGCAAGAAGTTCAGACAGGGAACATGCAATAATGGAGACAAATGCGGCTACTCCCACAACCTGGAGCAGACAACGGAGGAGAAAATGGAATGATTCAGtcttctaaatgtttttttttgtttttgtgttttttttaaatccttttaTTTCTGGAGTTTGAATGGCCCAGTGCAGCCTGGACAAAGGGAGTATGATGCACTGCAAGCAGATTGTATTTGAATAGGCCCAAAAACATAACAACCATTACAATAtgcagaacatttttttttaagatctttTGTTATTCGACTGTTTCAGTCCAATAAagtcccccacccacccccgcTGACTTTAAA
>XM_039794914.1
GAGCGGGCAGCGCTTTTCCCAACTCTTCACTAGGCCTCGCGGGTTTCCGTAGAGACGCTCCAAACATGGCTGCCTCCATGTGCTAACGTGAGAGTAAACTAACcgaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagcgaGGAGTTTTCAGTCGCTCGCAAGACCCCATCGCCTTTATATTTACCCTAACCCTGACCATTTAGAAAACAAGTGTCCGCCTTGAGGGAAGGTGTCACAGGCGCTGTACCTTTATGCTGGTGCGGACAGCTCGGCACTTCCCCCTCATCATCTCCCATCATCTGCATCCTTCCCGCACTCGTTCTGCCACACAGACGTTTCAGTTGAGCTTAGGCATTGCTGCTGCCGCCAGCAGGGGGCTGAGATCCATGGAGCACCTAAAAACTGCCCCCGAGGTTCCCACCACCAAACCTCCTCCCACGACTGCCGAATCTTCAGCAGAAGATACGAGCCTGGCACCCACGGACACGACGGCTGACGAGGAGAAGCCGCTTCCGGCAGGACTCCTACCTGGGGAGACAGTGGTCAAGGAGGGCAAGGCGGCCATCTTGTTCCCCAGTGCTAATGAGGTCTTTTACAACCCAGTCCAGGAGTTTAACAGAGATTTGACATGTGCTGTGATCACAGAGTTTGCCAGAGATCTGCTGGCCCAGCGCGGGGTGAAGGTGGTGGTGCccggagagaaagagagggtggTGGTGTCTCTGTCAGAGGAGACCAACGAGGACGACGCACAGACGGAGGAGAAAAACGGAGCAGAGTCTCCAGCAGTAACCGCAACAGTGGGGGAGAAATGCGAGCGTGGCCTTCGCGTGCTGGAGGGTCTGGCGGCGTCCGGTTTGCGCTCTGTGCGTTTCGCTCTGGAAGTCCCGGGCCTGCAGAGCGTCACCGCCAACGACTTCTCCACCAAGGCTGCGGCGCTGATCGCCCGCAACGCCCAGTACAACGGAGTGAGCCACCTGCTGGAAGCTAGCTGCAGGGACGCCAGTATGCTGATGTATGAGATGCGAGGGAAGAAGGAGCGTTTTGATGTAATCGATCTGGATCCCTACGGGAGCCCCGCTTCCTTCTTGGATGCCGCCGTGCAGGCCGTCAGTGAGGGAGGTCTGTTGTGTGTAACGTGTACAGACATGGCGGTGATGGCAGGAAACAGCGGAGAGACCTGCTACAGCAAATACGGTTCGGTCTCCATCAAAGCCAAATACTGCCATGAGATgGCTCTTCGTATCATCCTCCACAGTTTGGACCAGAGGGCGGGGGTGTACCAGCGCTACATCCAGCCCCTGCTGTCCGTCAGCGTCGACTTTTACATCAGGGTCTTTGTACGCGTCTTCACAGGACAGGCCATGGTCAAAAACTCAGCAAGTAAACAGGCTCTGGTCTACAACTGTGTCGGCTGTGGCTCTTTTCACCTACAGAGAATGGGCAGGAGAACGAGCAATGGAAAACATATGAAGTATTCTCCTGCTGCCGGACCCCCAGTTGGACCAGAGTGTGAGCACTGTGGACAGAGACATCagCTGGGGGGTCCTATCTGGGCAGAGCCCATCTATGACTTGGCATTTGTCCAGAAGGTTTTGTCTGCTGTGTCGGGGAACCCGTCCCGATTTGGGACGTCCAAACGCATTGAGGGTATGCTCAGCATGGTGACCGAGGAGTTGGAAGATGTGCCTCTTTATTACACTATGGACAGTCTGAGCAGCACGATACACTGCAGTACTCCGCCCCTGCTCCAGTTTAAgtctGCTCTCCTTCATGCAGGCCACAGGGTTTCCCTCTCTCACGCCTGTAAGAATGCCATCAAGACAGATGCTCCACCTGCAGCTATCTGGGACGTCATGCGATGCTGGGAGAAGGCCAATCCTGTGAAGAGGGAGAAGCTGTCGGAGACGAGCCCCGCTTTCAAGATCCTCTCCACAGAGCCCAGctTAGAAGCCTGTTTCACTGTGAGGGAGGACGCCAACCCTCAGTCCCGTAAACGCCACCTGACCCGCTTCCAGGAGAATCCGCAGGCCTTCTGGGGACCCAAAGCTCGAGCCAAAGCTGGTGGCGGTATCGCTACTAACCTGCAGGACAAGAGGAAGAAGTGCCAGAACAAGAGGAAGAACCAGATCACAGACTCCTCAGAGGGAACATGCAATAATGGAGACAAATGCGGCTACTCCCACAACCTGGAGCAGACAACGGAGGAGAAAATGGAATGATTCAGtcttctaaatgtttttttttgtttttgtgttttttttaaatccttttaTTTCTGGAGTTTGAATGGCCCAGTGCAGCCTGGACAAAGGGAGTATGATGCACTGCAAGCAGATTGTATTTGAATAGGCCCAAAAACATAACAACCATTACAATAtgcagaacatttttttttaagatctttTGTTATTCGACTGTTTCAGTCCAATAAagtcccccacccacccccgcTGACTTTAAA

Function

symbol description
trmt1 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including head; immature eye; mesoderm; midbrain; and neural plate. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TRMT1 (tRNA methyltransferase 1).

NR:

description
PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794903.1 True 2500 mRNA 0.54 16 10996730 11022119
XM_039794914.1 False 2469 mRNA 0.54 16 10996728 11022119

Neighbor

gene id symbol gene type direction distance location
LOC120570847 stx10,LOC102798899 coding upstream 44497 10936550 ~ 10952231 (+)
cacna1ab cacna1a coding upstream 96004 10677339 ~ 10900724 (+)
wdr83os wdr83os coding upstream 334497 10655186 ~ 10662231 (+)
LOC120565892 LOC104935002,LOC106525101 coding upstream 350638 10645251 ~ 10646090 (+)
LOC120567770 NA coding upstream 363340 10631779 ~ 10633388 (+)
mfng LOC103362872,LOC102307749,LOC101485425 coding downstream 63374 11085493 ~ 11119333 (+)
LOC120569250 LOC103136458,LOC106522476,LOC103368092 coding downstream 167663 11189782 ~ 11495847 (+)
lgals2b LOC108231364 coding downstream 664859 11686978 ~ 11692071 (+)
LOC120573162 NA coding downstream 1109725 12131844 ~ 12136341 (+)
grap2b NA coding downstream 1125145 12147264 ~ 12156380 (+)
G3507 NA non-coding upstream 41792 10906305 ~ 10954936 (+)
G3527 NA non-coding upstream 105098 10891304 ~ 10891630 (+)
G3526 NA non-coding upstream 106100 10890336 ~ 10890628 (+)
G3525 NA non-coding upstream 111430 10884890 ~ 10885298 (+)
G3516 NA non-coding upstream 126861 10869659 ~ 10869867 (+)
G3600 NA non-coding downstream 27967 11050086 ~ 11050822 (+)
G3607 NA non-coding downstream 54734 11076853 ~ 11077060 (+)
LOC120571013 NA non-coding downstream 97833 11119952 ~ 11127420 (+)
G3610 NA non-coding downstream 99135 11121254 ~ 11122462 (+)
G3611 NA non-coding downstream 100467 11122586 ~ 11123257 (+)
LOC120559244 NA other upstream 537440 10320573 ~ 10459288 (+)
G3115 NA other upstream 605383 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 733755 10255444 ~ 10262973 (+)
LOC120559251 NA other upstream 829114 10123099 ~ 10167614 (+)
LOC120559494 LOC103359075 other upstream 864586 10098689 ~ 10132142 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 1174527 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 1282591 12304710 ~ 12322209 (+)
mgat3b mgat3,LOC103374702 other downstream 1508510 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 1663881 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 1770686 12792805 ~ 12796367 (+)

Expression


Co-expression Network