RNA id: XM_039794903.1


Basic Information

Item Value
RNA id XM_039794903.1
length 2500
RNA type mRNA
GC content 0.54
exon number 16
gene id trmt1
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10996728 ~ 11022119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGGCAGCGCTTTTCCCAACTCTTCACTAGGCCTCGCGGGTTTCCGTAGAGACGCTCCAAACATGGCTGCCTCCATGTGCTAACGTGAGAGTAAACTAACcgaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagcgaGGAGTTTTCAGTCGCTCGCAAGACCCCATCGCCTTTATATTTACCCTAACCCTGACCATTTAGAAAACAAGTGTCCGCCTTGAGGGAAGGTGTCACAGGCGCTGTACCTTTATGCTGGTGCGGACAGCTCGGCACTTCCCCCTCATCATCTCCCATCATCTGCATCCTTCCCGCACTCGTTCTGCCACACAGACGTTTCAGTTGAGCTTAGGCATTGCTGCTGCCGCCAGCAGGGGGCTGAGATCCATGGAGCACCTAAAAACTGCCCCCGAGGTTCCCACCACCAAACCTCCTCCCACGACTGCCGAATCTTCAGCAGAAGATACGAGCCTGGCACCCACGGACACGACGGCTGACGAGGAGAAGCCGCTTCCGGCAGGACTCCTACCTGGGGAGACAGTGGTCAAGGAGGGCAAGGCGGCCATCTTGTTCCCCAGTGCTAATGAGGTCTTTTACAACCCAGTCCAGGAGTTTAACAGAGATTTGACATGTGCTGTGATCACAGAGTTTGCCAGAGATCTGCTGGCCCAGCGCGGGGTGAAGGTGGTGGTGCccggagagaaagagagggtggTGGTGTCTCTGTCAGAGGAGACCAACGAGGACGACGCACAGACGGAGGAGAAAAACGGAGCAGAGTCTCCAGCAGTAACCGCAACAGTGGGGGAGAAATGCGAGCGTGGCCTTCGCGTGCTGGAGGGTCTGGCGGCGTCCGGTTTGCGCTCTGTGCGTTTCGCTCTGGAAGTCCCGGGCCTGCAGAGCGTCACCGCCAACGACTTCTCCACCAAGGCTGCGGCGCTGATCGCCCGCAACGCCCAGTACAACGGAGTGAGCCACCTGCTGGAAGCTAGCTGCAGGGACGCCAGTATGCTGATGTATGAGATGCGAGGGAAGAAGGAGCGTTTTGATGTAATCGATCTGGATCCCTACGGGAGCCCCGCTTCCTTCTTGGATGCCGCCGTGCAGGCCGTCAGTGAGGGAGGTCTGTTGTGTGTAACGTGTACAGACATGGCGGTGATGGCAGGAAACAGCGGAGAGACCTGCTACAGCAAATACGGTTCGGTCTCCATCAAAGCCAAATACTGCCATGAGATgGCTCTTCGTATCATCCTCCACAGTTTGGACCAGAGGGCGGGGGTGTACCAGCGCTACATCCAGCCCCTGCTGTCCGTCAGCGTCGACTTTTACATCAGGGTCTTTGTACGCGTCTTCACAGGACAGGCCATGGTCAAAAACTCAGCAAGTAAACAGGCTCTGGTCTACAACTGTGTCGGCTGTGGCTCTTTTCACCTACAGAGAATGGGCAGGAGAACGAGCAATGGAAAACATATGAAGTATTCTCCTGCTGCCGGACCCCCAGTTGGACCAGAGTGTGAGCACTGTGGACAGAGACATCagCTGGGGGGTCCTATCTGGGCAGAGCCCATCTATGACTTGGCATTTGTCCAGAAGGTTTTGTCTGCTGTGTCGGGGAACCCGTCCCGATTTGGGACGTCCAAACGCATTGAGGGTATGCTCAGCATGGTGACCGAGGAGTTGGAAGATGTGCCTCTTTATTACACTATGGACAGTCTGAGCAGCACGATACACTGCAGTACTCCGCCCCTGCTCCAGTTTAAgtctGCTCTCCTTCATGCAGGCCACAGGGTTTCCCTCTCTCACGCCTGTAAGAATGCCATCAAGACAGATGCTCCACCTGCAGCTATCTGGGACGTCATGCGATGCTGGGAGAAGGCCAATCCTGTGAAGAGGGAGAAGCTGTCGGAGACGAGCCCCGCTTTCAAGATCCTCTCCACAGAGCCCAGctTAGAAGCCTGTTTCACTGTGAGGGAGGACGCCAACCCTCAGTCCCGTAAACGCCACCTGACCCGCTTCCAGGAGAATCCGCAGGCCTTCTGGGGACCCAAAGCTCGAGCCAAAGCTGGTGGCGGTATCGCTACTAACCTGCAGGACAAGAGGAAGAAGTGCCAGAACAAGAGGAAGAACCAGATCACAGACTCCTCAGAGGTGAAAAACTTTCACTGCAAGAAGTTCAGACAGGGAACATGCAATAATGGAGACAAATGCGGCTACTCCCACAACCTGGAGCAGACAACGGAGGAGAAAATGGAATGATTCAGtcttctaaatgtttttttttgtttttgtgttttttttaaatccttttaTTTCTGGAGTTTGAATGGCCCAGTGCAGCCTGGACAAAGGGAGTATGATGCACTGCAAGCAGATTGTATTTGAATAGGCCCAAAAACATAACAACCATTACAATAtgcagaacatttttttttaagatctttTGTTATTCGACTGTTTCAGTCCAATAAagtcccccacccacccccgcTGACTTTAAA

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00555 TRMT1, trm1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4887 lncRNA upstream 41794 10906305 ~ 10954936 (+) True G3507
TU4907 lncRNA upstream 105100 10891304 ~ 10891630 (+) True G3527
TU4906 lncRNA upstream 106102 10890336 ~ 10890628 (+) True G3526
TU4905 lncRNA upstream 111432 10884890 ~ 10885298 (+) True G3525
TU4896 lncRNA upstream 126863 10869659 ~ 10869867 (+) True G3516
TU4990 lncRNA downstream 27967 11050086 ~ 11050822 (+) True G3600
TU4998 lncRNA downstream 54734 11076853 ~ 11077060 (+) True G3607
XR_005641205.1 lncRNA downstream 97833 11119952 ~ 11127420 (+) True LOC120571013
TU5001 lncRNA downstream 99135 11121254 ~ 11122462 (+) True G3610
TU5002 lncRNA downstream 100467 11122586 ~ 11123257 (+) True G3611
XM_039819474.1 mRNA upstream 44499 10936550 ~ 10952231 (+) True LOC120570847
XM_039794714.1 mRNA upstream 96006 10677339 ~ 10900724 (+) False cacna1ab
XM_039794706.1 mRNA upstream 96006 10677339 ~ 10900724 (+) True cacna1ab
XM_039803602.1 mRNA upstream 334499 10655186 ~ 10662231 (+) True wdr83os
XM_039812002.1 mRNA upstream 350640 10645251 ~ 10646090 (+) True LOC120565892
XM_039816214.1 mRNA downstream 63374 11085493 ~ 11119333 (+) True mfng
XM_039817061.1 mRNA downstream 167663 11189782 ~ 11495847 (+) True LOC120569250
XM_039794147.1 mRNA downstream 664859 11686978 ~ 11692071 (+) True lgals2b
XM_039822793.1 mRNA downstream 1109725 12131844 ~ 12136341 (+) False LOC120573162
XM_039822715.1 mRNA downstream 1109734 12131853 ~ 12136341 (+) True LOC120573162
TU4393 other upstream 605385 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 860571 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 872612 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1223795 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1495601 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1174527 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1663881 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1770686 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 1957896 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 2063004 13085123 ~ 13090460 (+) False pla2g6

Expression Profile