RNA id: TU4887


Basic Information

Item Value
RNA id TU4887
length 2545
lncRNA type sense_over
GC content 0.37
exon number 4
gene id G3507
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10906305 ~ 10954936 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAAACCCTGAACATTTGCATATTTGGCTTCAAAATTGGCAATAACATAAGATAGGTTAAGGGACGATAAGATAGATTTAAATTTTTCCTGAAGGACATTTTTGCACCCAAAATGGTCAATATACATAGCATGTTTTGTAAtgtcaaaattaaattaaatttaagtaAAACTAGAAAAAACAAGGATGAAAAAAGGATGCTTAAATTAAAGTGCAGGTTATGGTTACTACAAAGTTACAAGCAATGAAAACACTGCACAGAAAGGTATGTCTATGTCACTATATTACTACGAACCTGCTTGCACACATTagtgttcattaatgtgcaccCCCACCCTCTGTATATGAACagataaataacaataaacgtCACAAGTTCTAAATCAAAtgacaaataatttaaaaatccAAGTATATTTAATGATATCAAACAGAGAAAAGTAGTGAATCCCCTTGGaaccagagcatttttttatttttattttggtaatGACTTAAACAATTAACTAGTGCTATTGCTTTGTTTTCCGTGGGCTGATTAATCAATAACTCGACTAATTGTTTTAGaactaagtgtgtgtgtctaagagGAAGATATGTGAGTGAGTGGACTTGTATTTGTcagtttgttattgtgtgtgtgtgcgtgcatgcgtgcacaTGTCCTGACAACATCAGCTACAGTAGGTCACCCTCAGTGCCTTACACTGTACAGGACACGATGATTTCTCCTTCTGAGACAACAACATGTGAGATTTTAATATCCTCGTCGCCACTTtcatccccctccctcccttccttccctaCCTCACCCACTCCTCACCTTCCTCTGGGATCATTAAGTCCAGCCTGGATCGGCGAGGGTTTGGGGTGAAGCGGGGTCAGTAGATAAACATGTCATTTCTCTCAACCATTCTCTCTCACACCGTCTATTGTATATTTTGGGCTCAGTAATTCTTGTGTATATAATCCATAAACTTTCTGAAAAACTCTGAACTGTGTTCATCTGACGTTCTCCCTGTGTGttattcttctttcttctcagcATCTTCACATTGACTTCATCCCTCCCTTTCGCCTCATTCCTCATGTAATACCACTCATAAACACAAGGTGGTGGGATTGAGCTTTCACCATTATCCCTCATTGTGAAaggtgtactgtatgtctgtgaATGCAGTGCAGGTTGAATGAGTTCCTGCttgcgtgtgtgggtgtgcttTGTCTGTGAACGTCTGTCTGCAGTCTATGTGCGTCTTTGTGTACGTCTTCAGTTCTGTAGGGAGTCCGGCAGGTATTAGAGGTGAATTTCTTGATGATTTCGGCACATTAGTCCAAGATTATTCACTTGAATTGATAATTTGTTCTCTCGCATTTGCTCTATAGGTAGAGTGTGTACAACCAAATGTGTTATtgcataaaatacataaaatacagtATGATTAAAGCTGCACTGATCAACGacaaggggggaaaaaaactgtgCTTATTGCTAAAACGTTAGCTAACAGTTAGCTACTGACGCAGAGCAACAGTAGCATtgatttggagttgtgtttgtgtccacctaaAGAATTAAAGTCCATTATTCACGCTCCTTTAAGCTCTGTTTCAGTCCACACCAACTCTTAAGAGTATATCTGTTCCTTAGATGTTTACCAGCTAGTTGCTGACTTTGTCTGCCGCTTGGTGCCGAACAATGACTGAAACAACTTTCGATGTAGCATCGACAACGTTTGAGAGAGCATCAACGGGGCTAATGCGCCAAAGGTGATAACCTACTGATACTTTGGTACAATCAGTTCAGTAATTTGTGTGCCCCCTGTATATACCGAAACACAGCGGCTAGCCTGATGCTAACACTCCTTGCTAATACTATTTATTTCAAGGAAGGAATTATTCATTGTTGTGCAAGCCTATCAAAACTTGTGTCCCTAATACTTGCCGGGCTCAGTCCCTTTCTGTGCGTGTTTACAGTAAATTGATTCCTCAGACACGGGTGAAGTGTCTCCTGCTGTCGCCATAGCAACCCCCGAGGTCCCTCTCTTTGTTTCCATCTATCGCTTTCCGCTCCATCTTTCATCACCATCAGCCCAGCGGAGACGAGTTGCTTCCAGGAGATCTGTCCTCACCTCTTGATGTCAGCGTCTCGGACGCTGGAGGCCGATCTCTCCCAAAACATCTCCGGGTGCCATAAGATCAGGAAATCAGcagggtctttttttttttttttttatAAAGAATGTAAACACTTTTAGGTACATTTTTCTAAACATACGACTCATCTAAACCTAACCCCAAAGGCATCAGAGCTTTAAAACGTCAGTCGTTGTTGACTTTAAAACCTTGTGGGTGTTAAGAGTTGGGGAACTGTtctgttgtctgtctgctgtagaAAGAAGAACGTGCTGAACTTCATGCAGTACTGGCCGCCATTGTGCCCTTTAACAGCACCATTATCTGCACTTTTACTgcctctattaaaaaaaaaataaaaggataaCAACGGCTACACGTTACTTTTCATTTCACCGCCCTGCTATAT

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4907 lncRNA upstream 14675 10891304 ~ 10891630 (+) True G3527
TU4906 lncRNA upstream 15677 10890336 ~ 10890628 (+) True G3526
TU4905 lncRNA upstream 21007 10884890 ~ 10885298 (+) True G3525
TU4896 lncRNA upstream 36438 10869659 ~ 10869867 (+) True G3516
XR_005639311.1 lncRNA upstream 456378 10446927 ~ 10449927 (+) True LOC120559544
TU4990 lncRNA downstream 95150 11050086 ~ 11050822 (+) True G3600
TU4998 lncRNA downstream 121917 11076853 ~ 11077060 (+) True G3607
XR_005641205.1 lncRNA downstream 165016 11119952 ~ 11127420 (+) True LOC120571013
TU5001 lncRNA downstream 166318 11121254 ~ 11122462 (+) True G3610
TU5002 lncRNA downstream 167650 11122586 ~ 11123257 (+) True G3611
XM_039794714.1 mRNA upstream 5581 10677339 ~ 10900724 (+) False cacna1ab
XM_039794706.1 mRNA upstream 5581 10677339 ~ 10900724 (+) True cacna1ab
XM_039803602.1 mRNA upstream 244074 10655186 ~ 10662231 (+) True wdr83os
XM_039812002.1 mRNA upstream 260215 10645251 ~ 10646090 (+) True LOC120565892
XM_039814785.1 mRNA upstream 272917 10631779 ~ 10633388 (+) True LOC120567770
XM_039794914.1 mRNA downstream 41792 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA downstream 41794 10996730 ~ 11022119 (+) True trmt1
XM_039816214.1 mRNA downstream 130557 11085493 ~ 11119333 (+) True mfng
XM_039817061.1 mRNA downstream 234846 11189782 ~ 11495847 (+) True LOC120569250
XM_039794147.1 mRNA downstream 732042 11686978 ~ 11692071 (+) True lgals2b
TU4393 other upstream 514960 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 770146 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 782187 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1133370 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1405176 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1241710 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1731064 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1837869 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2025079 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 2130187 13085123 ~ 13090460 (+) False pla2g6

Expression Profile