RNA id: XM_039794706.1


Basic Information

Item Value
RNA id XM_039794706.1
length 8144
RNA type mRNA
GC content 0.58
exon number 52
gene id cacna1ab
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10677339 ~ 10900724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgTGTGGCGGACGAGGAGCAGCCAGCGAACAAACCGAGACGTCCTTTTTAGAACAGCGTCACCACACGTACTCGGATACTCTGCTCATCTGGCATCGCAGTGACATTCATTGACCGGCGGACATCACTTTTGTCGGGATGTTCTGGATGTGAACATGGAGTTTTCCTCCCCTCCGGTGGTGGATACGCTGCTGTTCCTTCTCCGCCCGTGCAGTCCTCCCAGCACCGCTGACTGGTTTCCAGCCGCCTCCGCCACACAGGTGAGCAGGTCTGGGACAGCGGAGAGCCGGTGGGCGGGTCTGGAATCCCCGGAGACTGCAGGCTTGGTACCCGCTGGACAGCAGAGCACCTGACAGACAGCTCCATGCTGTCCCCCCTCCATCCGGACCATGGCGGCTCTGTGGTGTGGCCCCAGAGTtcatcctgctcctcctcctctcaggGCCTCCAACGGCCGCTACGCTGCCGCCCTCCCCCAATCAGCGGGAGCAGCGTTGGCCCCAACCCCACCTACTACCACGCCGTCTATGACGTCCGGGTGGACCAGTACAGTGAAGTGCCCTTTACCGGCGGAGGTGGTGGCTATGGGGTGCGATCTGGCCGGGGCTCCTTGTCCCTGGTTACCAGCAGCAACGACCCCACAGTCCCGCTGATCCGCCGGAGGGGAGGAGTGATCGACCACCGTGATGTCATCCTGGCCCACCAGGCACACAAGCTGCACAACACGCCGCAGGCCAGGAGGAAACAGTGGGAAATGGCGCGTTTTGGAGACGAGCTACCCAACAggtatggaggaggaggaggaggaggtggtggtggcggTGGTGGCGGGGGTGCCGGCGGACAAGGGGGGCCCGGCCGCGGCGGCAGCAGGCAAGGGGGGCCCCCCGGAGGGCAGCGGATGTACAAGCAGTCGATGGCCCAGAGAGCCCGGACCATGGCCCTGTACAACCCCATACCCGTCCGGCAGAGCTGCCTAACGGTCAACcgctccctcttcctcttcagcGAAGACAACCTGGTGAGGAAGTACGCCAAAAAGATCACCGAATGGCCTCCATTTGAATGGATGATCCTTACCACCATCATTGCAAACTGCATCGTCCTGGCTCTGGAACAGCACCTTCCTGATGGAGACAAGACGCCTCTGTCTGAACGACtgGAGGAGACAGAGCCCTACTTCATAGCCATCTTCTGTTTTGAATCGGGGATAAAGATCCTGGCTCTGGGTTTTGCGTTACATAAGGGCTCCTATCTGAGGAACGGCTGGAACGTCATGGACTTCGTGGTCGTGCTCACCGGTATTTTGTCGTCAGTGGGGTCTCAGCTTGACCTGAGGACGCTACGAGCCGTCAGAGTGCTGCGACCACTGAAACTGGTGTCTGGGATTCCCAGTCTGCAGGTGGTGCTCAAGTCCATTATGAAGGCTATGATCCCCCTGCTTCAGATTGGCTTGCTGTTGTTCGTGGCCATCCTTATGTTCGCCATCATCGGCCTGGAGTTCTACATGGGAAAGTTCCACACTACCTGCTACGACAAAGTCACACGAGAGGTAGTGGACGCATTACCATGTGGCACAGAGTTGCCGTCCCGGTTGTGTCCTAACGGCACGGTGTGTGACAGTCACTGGATTGGACCCAACTACGGCATCACCCAGTTCGACAACATCCTGTTCGCCGTGCTCACTGTCTTCCAGTGCATCACCATGGAGGGATGGACAGACATGCTCTACTACAGTAATGACGTGGAGGGCAGTGCCTGGAACTGGATGTACTACATCCCCCTCATCATCATCGGCTCCTTCTTCATGCTTAACCTGGTGCTGGGTGTACTCTCAGGTGAATTTgccaaagagagagagcgagtggAGAACAGGAGCGAGTTCCTCAAGCTGAGGCGACAGCAGCAGATTGAGAGGGAGCTCAACGGCTACCTGGAGTGGATCTGCAAAGCGGAAGTGATTTTGGCGGAAGAGGACGGCACAGTGAACTTTGATGgTACGAGGCGAAGGCCAACcatcaaaaccaaaaacaacaagACGGAGCTGCTGAACCCTGAGGAAGGAGAGGACAACATGggagatgcagtagGTTTTGCCCGCTCCAGTTTAAAGAATGGGATGGATGGCTCCAATTACAGCAAGAGGGAGCGGCGACTGCGATTCTTCATCCGCAAGATAGTGAAGACTCAGGCTTTCTATTGGACTGTGCTCTTCCTGGTGGGCCTCAACACCATGTGTGTGGCTGTGGTTCATTACGACCAGCCTGAGATCCTCTCCGATTTCCTCTtCTATGCAGAGTTTATCTTTCTCGGCCTGTTCATGTCTGAGATGCTGATCAAGATGTATGGTCTGGGCATCCAGCCCTACTTGCACTCCTCATTCAACTGCTTCGACTGTGTGgtCATCATGGGCAGTATCTTCGAGGTGGTGTGGGCCACCATCAAACCAGGAACATCCTTCGGGTTCAGTGTGTTACGAGCTCTGCGACTGCTCCGCATCTTCAAAGTCACCAAGTACTGGGCTCCTCTTCGAAACCTGGTGGTGTCTCTGCTGAACTCCATGAAGTCCATCGTCAGTTTGctgttcctcctcttcctcttcattGTGGTCTTCGCCTTGTTGGGGATGCAGCTGTTTGGAGGACAATTCAACTTTGAAGACGGAACCCCACCTACCAACTTTGACACTTTTGCAGCAGCGATCATGACAGTGTTTCAGATCCTGACAGGAGAAGACTGGAACATGGTGATGTACGATGGCATCAAGTCCCAGGGAGGAGTGAACGACAAAGGGATGGTGTTCTCCATCTTCTTCATCGTCCTCACACTTTTTGGCAACTACACTCTGCTTAACGTCTTCTTGGCCATCGCTGTCGACAATCTGGCCAACGCCCAGGAGCTCACCAAGGATgaggaggaacaggaggaagcagccaatcagaagacTGCAATGCAGAAGGCTAAGGAAGTAGCAGAGGTCAGCCCGCTGTCAGCAGCCAACCTGACTATTGCTGCTAAGGAGCAGCAGAAGAACCACATCAAGGGCAACATGTCAGTGTGGGAGCAGAGAACGAGCGAGATCCGCCGTCAGAACCTGATGACGAGCCGCGAGGCGCTCTACAACGAGCTGGAGCAGGAGGAGTGGAAggtgggaggggagggagaagagGTGTCCTACCCACGGAAACCACGTGGCGATATGAAGACCCACCTGGACCGGCCGCTGGTGGTCAACCCTCAGGACAACCgcaacaacaacaccaacaaGACCCAACCTGGTGAGCTGCCTCTGGACCAGGAGTACCGGCGCCAGGACATGGATCACTACCGCCGAGCCACACACCACTATCACTACCACCCCCATCATCAGAAAGCCACAGGGCCGGACGATAGAGGGACGGGCCAGCCGGCGGATACCCGCATGGAGCGCGGCTTCAGCTGCACGTCTCTGGGCAACGCGGAGGGCCAGCTCGGGGAGGGGAGGCACAGCCACAGGAGCCACCGGGGCCACCGCCACAGGAACAGGGAAGGCAGGGAGGCTCGCAGCGTGTCTCCCCACCATAGCGAGGGGGTCGACGGGAACAACGAACACAGGAGGTCCCGGCAGCACCGCAAGGCAGCcagggagggggaggaaggCAGGAGACATAGATCcagagggacggagggagagggggagaaaggCGAAGAAGGGGAGGGACGGAAGTCGAGACGGCATCGCCATGGCAACCAGGAGAGGAGCAGAGGGCATCGCACCAGAAAGGAGCACCACAGCACGGGTCCCAGCCTCTCCACCACACGGCCCATACAGCAGTACAACGAGGATCTGGACAACTTCCGCAACAACAGCAAGCTGGCCGGTGCCCATGAGCACCCTTACGCCCTCCCACCGGATCACCCGGACCATCCTGACCACGTCAACAACCTGCTGAACTGCCGTGACGCAGACACCCacaccctcctccacagcatgGACAGCCTGATCCTGACCAGCATGGCCAAACCTGAGTACACCAAAATAGACATGCCACCTGTCTATCCCTACCCCTCCACCAACGCCATCCTGCAGGTGAACAAGAACGCCAACACCAACCAGAAGAAGAgcgaggagaagaaggaggaggaggacgagggaGGAGATGAAGACGGCCCCAAACCTATGCCTCCCTTCAGCTCCTGCTTCATAATGTCCACCACCAACCCGTTTCGGAAGTGCTGTCACTACATCCTGACTCTGAAGTATTTTGAGTTCAGCATCCTGTCTGTCATCGCTATGAGCAGCATCGCCCTCGCTGCAGAGGACCCTGTCTGGCCTGAGTCCCCACGAAACAATGTGCTGCGTTATTTTGACTACGTTTTCACAGGGGTcttcacatttgaaatgttgatcaagATGGTGGTGCTCGGCTTGTTTCTCCACCAGGGCTCCTACTTTCGCGACTTGTGGAACATTCTGGACTTTATAGTGGTTAGTGGTGCTCTGGTGGCCTTCGCCTTCACGACTAGCACCCGGGGAAGCAGCAAGGGCAAAGACATCAGTACGATCAAGTCCCTTCGCGTGCTGAGGGTGCTGCGTCCTCTGAAGACCATCAAACGACTCCCCAAGTTAAAGGCTGTGTTTGACTGTGTGGTCAACTCTCTGAAGAACGTGCTGAACATCTTGATCGTCTACATGCTCTTCATGTTCATCTTCGCTGTGGTGGCCGTGCAGCTCTTTAAAGGCCGATTCTTCTTCTGCACGGACGAATCCAAAGAGTTTGAGCGGGACTGCAGGGGCGAGTACTTGGTGTATGATAGAGATGAGGTTAAAGCTCAGAAGCGGGAGTGGAAGAAGTACGATTTCCACTACGACAACGTGGCTTGGGCCCTGCTCACCCTCTTCACTGTCTCCACTGGAGAGGGGTGGCCGCAGGTGTTAAAGCACTCGGTGGACTCCACCTTTGAGAATCAGGGCCCTAGCCCGGGTTTTAGGATGGAAATGTCCATCTTTTACGTGGTGTACTTCGTTGTCTTCCCCTTCTTCTTCGTAAACATCTTTGTGgctctcatcatcatcaccttCCAGGAACAGGGGGATAAGATGATGGAGGACTACAGTTTAGAAAAGAATGAGAGAGCCTGTATAGACTTTGCCATCAACGCCAGGCCTTTGACTCGCCACATGCCCAAGAATAAACTGAGCTTCCAGTACCGCATGTGGCAGTTTGTGGTGTCTCCGCCCTTCGAGTACAGCATCATGGCTCTGATCGCGCTCAACACcattgtcctcatgatgaagTTTGACGGTGCATCAAAAACATATGATGAGGTCCTGAAGAACCTCAACATCGTGTTTACCACCTTCTTCTTCATGGAATCAGTCCTTAAGGTCATCGCTTTCGGCCCTCTGAATTTCTTCAGAGATGCCTGGAACATTTTTGATTTTGTCTCCGTCCTTGGAAGCATCACTGACATATTAGTGACAGAACTAGGGAATAACTTCATCAACCTGAGCTTCCTGAGGCTGTTCAGAGCAGCTCGCCTCATCAAGCTGCTGAGACAGGGAGAGACCATTCGCATCCTGCTGTGGACCTTTGTCCAGTCCTTTAAGGCTCTGCCGTACGTGTGCCTGCTCATTGCCATGCTCTTCTTCATCTATGCCATCATCGGCATGCAGTTGTTTGGGAATTTGGCGCTAGATGACGAGGGAGAGAGTGCCATCAACGAACACAATAACTTCAGGACCTTCATCATGGCTCTAATGCTGCTGTTCAGGAGCGCTACGGGCGAGGCCTGGCATGACATCATGTTGGCCTGCCTGGGCGGCAAGGAATGCGACCCGGCCTCAGGGAACAAAGACCCTGAATGTGGCAGCACCTTTGCCTACACCTACTTTGTCTCCTTCATCTTCCTCTGTTCTTTCCtgATGCTGAATCTGTTCGTGGCTGTCATCATGGACAACTTTGAGTACCTGACCAGAGACTCCTCTATCCTGGGGCCGCATCACCTGGACGAGTACGTAAGGATATGGGCCGAGTACGACCCTGCCGCCTGCGGGCGCATACATTATAAGGATATGTACAGTTTATTGCGAGTTATCTCCCCTCCTCTGGGCCTTGGCAAGAAATGCCCACATAGGGTGGCCTGCAAGAGGCTGCTGCGCATGGACCTGCCGGTTGCTGATGACAACACGGTGCATTTTAACTCCACCCTCATGGCTCTGATCAGGACAGCACTGGATATAAAGATTGCCAAGGGAGGTGCAGACAAGCACCAGATGGATGCAGAGCTGAGAAAGGAGATGATGGCTATTTGGCCGAACTTGTCGCAGAAGACACTGGACCTGCTGGTTACGCCGCACAAGGCAGCCACAGACTTGACGGTGGGCAAAATCTACGCTGCCATGATGATCATGGAATACTACCGGCAGAGCAAGACGAAAAAGCTGCAGGCCCTGCGAGAGGAACAGAACCGAACACCATTAATGTTTCAGCGCATGGAGCCGCCCTCTGAGGGAGGGGGCACGGACGGCCAGGGGGGTCAAGGCCTCAACAGTCTCCCCAGCACCCAGCCAGATAACCCAAACAGCATACCTCCCGAGGGTGGCATGACTGAGAGCCAATCGTGGGTGACGGCCAAAGCCCAGGAAATGTTCCAAAAGACGGGTAACTGGAGCCCCGACAGACCCTACCCCGACAATCCTCACGACAACCGTCACAACCCCCAGACGGTAGAGATGAGGGAGATGGGGCGGGACGGGTACTCCGACACTGAGCCCTATCACCCAATGGATGGGCATGGGCGGACCCTCTCCATGCCCCGCCTCTCGGCAGACAACCAAAGAGCTCATGCTGTTTcgCGGAGGAGACACAGGCCTCGCGGAAATAACCTCAGTACCATCACCGACACCAGTCCGATGCGCCGCTCCACCTCCAGCCTGGTCCACGGGCGTACGGGCCGGGGCGTGAGGCTGGACGACTACTCCCTGGAGAGGGTGGTGTCTGAGGAGGGGAGACATGGGGGAGGACGCAGACACAGGGACAGGAGTCACGGGGCCTCCCAGCGCTCCCTGACCAGATACACTGACGCCGACACGGGTCTGGGCACAGACCTCAGCACGACCACGCAGTCGGGCGACCTTCCTCCCAAGGAGCGCGAGCGGGACCGCGGCCGGACCAAGGACCGTCgtcaccaccatcaccaccatcaccaccacagcTCCATGGACAAGGAGCGCTACGGCCCTGACAGACACGATTACTCCCACAGGCACCCCCACAACCGCCACTGGTCCCGCTCTCCCAGCGACGGGCCTGATGGACGTGGACACAGACAGGGCAGTAGTTCGGTGAGCGGCAGCCCGGTCCCCTCCACCTCGGGGACCAGCACTCCGCGGAGAGGGCGTCGCCAGCTACCCCAGACCCCTGCTGTACCCCGACCGCATGTCACCTACTCCCCTACTGTCCGCAAGCCCAGCTACGGCCCCCCGGGGCCGGGCCGTCTGCGCTCGCCCTCCCCCAGACACTTCTCCCCGCCAGACCACGACAGAGGCTACCACCACCGACCCCCTTCGCGCCAGGTTTCTCCCCACCACGGGGCATCCCCGCCCCGGCACGGTTCGCCGCGCTCCCCCAGGCACCAGTCCCCGCGCTCGCCCCTCCACGGCTCGCCCAGGTCCCCTCACCGAGGCCGCTGGAGCGGGCCCCCGCCCGGGGACAGCCTGGAGGGCGACGGACCCTTCTACGAGCGTGACTACGAGTACGAGCGGCACCATGAGCCCCCCGCCTACGAGCAAAGCCTCTCCCACGGCAACCCGCACCCACATGGGGGAAATCCTCACCCGCGCTCGCCTAGGACTGCCCGCCACGGGCCCCCTCCGCCCCCTCACCCGCATCCACGCAGGGTCCCCAATGGCTACCGCTCATCCTCACCTTCCCCACATCGGCGGGGGCCCCCCGGGGCACCCCCCCATCCACACCACCGCCCCCCCCACGCCCGAGGGCCCCGCAAGGGCCTGCATGAACCTTATAGCGAGACGGACGAGGACGACTGGTGCTAGCGACCACAGGAAGCGAGGGATAAGGGCAGGAGAGGAGAAGAATAGCAGCCTCCGGTGCTCTGGCCTTGGATatgtagacttttttttaataaagcagAGTTGGTGA

Function

GO: NA

KEGG:

id description
K04344 CACNA1A, CAV2.1; voltage-dependent calcium channel P/Q type alpha-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639311.1 lncRNA upstream 227412 10446927 ~ 10449927 (+) True LOC120559544
XR_005639325.1 lncRNA upstream 253034 10422208 ~ 10424305 (+) True LOC120559586
TU4519 lncRNA upstream 256118 10415805 ~ 10421221 (+) False LOC120559244
TU4523 lncRNA upstream 256118 10418607 ~ 10421221 (+) False LOC120559244
TU4525 lncRNA upstream 262496 10414304 ~ 10414843 (+) False LOC120559244
TU4887 lncRNA downstream 5581 10906305 ~ 10954936 (+) True G3507
TU4912 lncRNA downstream 26256 10926980 ~ 11023608 (+) True G3530
TU4990 lncRNA downstream 149362 11050086 ~ 11050822 (+) True G3600
TU4998 lncRNA downstream 176129 11076853 ~ 11077060 (+) True G3607
XR_005641205.1 lncRNA downstream 219228 11119952 ~ 11127420 (+) True LOC120571013
XM_039803602.1 mRNA upstream 15108 10655186 ~ 10662231 (+) True wdr83os
XM_039812002.1 mRNA upstream 31249 10645251 ~ 10646090 (+) True LOC120565892
XM_039814785.1 mRNA upstream 43951 10631779 ~ 10633388 (+) True LOC120567770
XM_039811974.1 mRNA upstream 183445 10474106 ~ 10493894 (+) True LOC120565884
XM_039801493.1 mRNA upstream 203794 10464821 ~ 10473545 (+) False LOC120559619
XM_039819474.1 mRNA downstream 35826 10936550 ~ 10952231 (+) True LOC120570847
XM_039794914.1 mRNA downstream 96004 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA downstream 96006 10996730 ~ 11022119 (+) True trmt1
XM_039816214.1 mRNA downstream 184769 11085493 ~ 11119333 (+) True mfng
XM_039817061.1 mRNA downstream 289058 11189782 ~ 11495847 (+) True LOC120569250
TU4393 other upstream 285994 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 541180 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 553221 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 904404 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1176210 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1295922 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1785276 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1892081 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2079291 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 2184399 13085123 ~ 13090460 (+) False pla2g6

Expression Profile