RNA id: XR_005641205.1


Basic Information

Item Value
RNA id XR_005641205.1
length 918
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC120571013
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 11119952 ~ 11127420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagcacatggtgctctgtacccggcttacagtcacctattctcgggtaattgaaccaccaactaccgctgacctggcGGAGCACCGTAGCCGGTGTCGCAGAGCTCTCTTgcggctaaacacatctactaactgccgcTGACATGACGTGCTGTGACAGAGgtctgtagccggcgtcacgaagctctgtagcggcgTTGGTGTatctgttgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgttgttatgaaGGGGATGGTGCCCTTGTGCCTATGAAGTCTGCACACAGTGGACCATTCTGACCCACATCTCCCTCCTTATCCAAAACatgtcctccctccctccctccctccctccctccctcctaccTTTGTCTTCCTCCCTTCTTTCCTCCACccctccatctgtctctctgttgacTCAGTCTTGTCCACAGTTGCTTCGCTGGCTCCTCCAAGGCAATGGCTGaaagcaaacaacaacaacaacaacgacaaACCACTGACAGCACGAAGAAGATCACAACTGATACGCCTGAAAAGCCGCTTCGCACCATGAAACCTATTGAGGCCTTGTAAAGGACGGCCGGGCACCAAGAGTGCACGGGAGGAATAAAACGATGGGGGAGGCTGCAAGGAGAGCAAAGGAGTGAGAGGCAGTCCTCAGTTCAACTGGAAGTTGCTCTGTCCCTCCTTCATAGAgaccgtctcaaagctcttattttctgccccgaggagcgAGCATCAAGGAGGGATCTCCGAGGAGCTATTAGCGAGGATCGCccaggagctatgagcgaggatacacgagagcagcttTTCCGTAACTCTGCCCATACAGCTGAAACATTAAAAATCTGATGTTTATTTTCCTTTACCCACTTTGTCactgtatccacattattggtgattatttat

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4998 lncRNA upstream 42892 11076853 ~ 11077060 (+) True G3607
TU4990 lncRNA upstream 69130 11050086 ~ 11050822 (+) True G3600
TU4912 lncRNA upstream 96344 10926980 ~ 11023608 (+) True G3530
TU4887 lncRNA upstream 165016 10906305 ~ 10954936 (+) True G3507
TU4907 lncRNA upstream 228322 10891304 ~ 10891630 (+) True G3527
TU5015 lncRNA downstream 157664 11285084 ~ 11285418 (+) True G3624
TU5017 lncRNA downstream 342162 11469582 ~ 11469817 (+) True G3626
TU5057 lncRNA downstream 392264 11519684 ~ 11520617 (+) True G3660
TU5060 lncRNA downstream 401736 11529156 ~ 11529446 (+) True G3663
TU5066 lncRNA downstream 540134 11667554 ~ 11675358 (+) True G3669
XM_039816214.1 mRNA upstream 619 11085493 ~ 11119333 (+) True mfng
XM_039794914.1 mRNA upstream 97833 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA upstream 97833 10996730 ~ 11022119 (+) True trmt1
XM_039819474.1 mRNA upstream 167721 10936550 ~ 10952231 (+) True LOC120570847
XM_039794714.1 mRNA upstream 219228 10677339 ~ 10900724 (+) False cacna1ab
XM_039817061.1 mRNA downstream 62362 11189782 ~ 11495847 (+) True LOC120569250
XM_039794147.1 mRNA downstream 559558 11686978 ~ 11692071 (+) True lgals2b
XM_039822793.1 mRNA downstream 1004424 12131844 ~ 12136341 (+) False LOC120573162
XM_039822715.1 mRNA downstream 1004433 12131853 ~ 12136341 (+) True LOC120573162
XM_039815965.1 mRNA downstream 1019844 12147264 ~ 12156380 (+) True grap2b
TU4393 other upstream 728607 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 983793 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 995834 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1347017 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1618823 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1069226 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1558580 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1665385 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 1852595 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 1957703 13085123 ~ 13090460 (+) False pla2g6

Expression Profile