RNA id: TU5015


Basic Information

Item Value
RNA id TU5015
length 335
lncRNA type intronic
GC content 0.48
exon number 1
gene id G3624
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 11285084 ~ 11285418 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaggttacctcccctttctctgctttgcccgcccagagaatttggccaacccatgagagagagacatcatggctttcaaatgagcaaagtggcagttggtcaaggccacacccccaccctccaccttgcccccctctctcctcctcaatagctacagacacagaaatggcacatactaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcggggaagagacttcagatatagtattaggggaccactaaggtctatataaagagacttcagatacagtattaggggaccactaaggtctatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641205.1 lncRNA upstream 157664 11119952 ~ 11127420 (+) True LOC120571013
TU5002 lncRNA upstream 161827 11122586 ~ 11123257 (+) True G3611
TU5001 lncRNA upstream 162622 11121254 ~ 11122462 (+) True G3610
TU4998 lncRNA upstream 208024 11076853 ~ 11077060 (+) True G3607
TU4990 lncRNA upstream 234262 11050086 ~ 11050822 (+) True G3600
TU5017 lncRNA downstream 184164 11469582 ~ 11469817 (+) True G3626
TU5057 lncRNA downstream 234266 11519684 ~ 11520617 (+) True G3660
TU5060 lncRNA downstream 243738 11529156 ~ 11529446 (+) True G3663
TU5066 lncRNA downstream 382136 11667554 ~ 11675358 (+) True G3669
TU5097 lncRNA downstream 411623 11697041 ~ 11700405 (+) True G3696
XM_039816214.1 mRNA upstream 165751 11085493 ~ 11119333 (+) True mfng
XM_039794914.1 mRNA upstream 262965 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA upstream 262965 10996730 ~ 11022119 (+) True trmt1
XM_039819474.1 mRNA upstream 332853 10936550 ~ 10952231 (+) True LOC120570847
XM_039794706.1 mRNA upstream 384360 10677339 ~ 10900724 (+) True cacna1ab
XM_039794147.1 mRNA downstream 401560 11686978 ~ 11692071 (+) True lgals2b
XM_039822793.1 mRNA downstream 846426 12131844 ~ 12136341 (+) False LOC120573162
XM_039822715.1 mRNA downstream 846435 12131853 ~ 12136341 (+) True LOC120573162
XM_039815965.1 mRNA downstream 861846 12147264 ~ 12156380 (+) True grap2b
XM_039815953.1 mRNA downstream 873884 12159302 ~ 12173782 (+) True fam83fb
TU4393 other upstream 893739 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 1148925 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 1160966 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1512149 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1783955 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 911228 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1400582 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1507387 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 1694597 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 1799705 13085123 ~ 13090460 (+) False pla2g6

Expression Profile