RNA id: XM_039816214.1


Basic Information

Item Value
RNA id XM_039816214.1
length 1883
RNA type mRNA
GC content 0.48
exon number 8
gene id mfng
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 11085493 ~ 11119333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGACTGTGACAAAAGTCATATATCCGAGTGACAGCGGCGTTATAGAAAATGAGAGGAACATCTGTCTTATTGCCATGCTGCTGGAGTGCCTCTTTAAAACAGGCGAAATACTTAAAAAGTGATTATTAAATTATTCTGATAAACCCTCTCCAGTCCAAGTCTCCTACAGTCATGCAAATTGATTAATGAGGAACACCGATGaaaaagtttgaagaaggaagaCGGAGAGGTGATGGAGGAACCACCACGAAATTAGACATTTTATATGAGGGGACCAAGAACATGGGTTTCACACTTTATGGAATGTAAATAACTTAGTTCTATCATGCAGAAGAAATGGATACGTCGGAGGTTGCCCGTTTTGATTCTCACCATCTTCATTATTCTCTATGTGGACTTTCAATTACGCACCAGCAGCCCTCCAAAGCTCAGCGTGGCTCACCATCCGTCACCATTTGTTCTTCCGCGCCCCATCCATCGGGCTCCATCCCCGGCCACGGACGCACAGACCCCgtctagcagcagcagcagcaccgggaACGGAGGACACCCAGCCTCCGGAGTTGCACATGTCACCCAGCCAAAACTGAAGCTGGAGGACATCTTCGTCGCCGTGAAGACCACCGGGAGGTTCCACAAGACGCGTCTTGCGCTCCTGTTGGAGACGTGGATCTCCAGAACCAAGGCGCACACTTTCATTTTCACAGACACGGAGGATGTGGACTTGCATTCAGAAGGTTATAACATGGTGGTAACAGGCTGCCAGTCGGATCACAGCCAGCAGGCTCTGTCCTGCAAGATGTCCGCTGAGTACGACGGCTTCATGGCCTCAGACAAGAGGTGGTTTTGTCATGTGGACGATGATAACTACGTGCACCCGGAGGCCCTCCTCTCCCTGCTCTCAGCCTTTCCCCAGGACGGCGACATCTACGTGGGCAAACCGAGTCTGGACAAGCCCATCACTGCTCATGAACTGCTGGAGGGCAATGCAACGAGGGAAGTGCGGTTCTGGTTCGCTACAGGAGGAGCAGGATTCTGTCTGAGTCGGCAGCTGGCGGAGAAGATGGCTCCATGGGCCAGGGGCTCAAAGTTCGAGCAGACGTCGGCTACGATCCGTCTCCCTGACGACTGTACGGTGGGCTTCATCGTGGAGAAGAGGCTGGGCATCTCCATGGTCCACTGTCCTTTATTCCACTCCCACCTGGAAAACCTGCTGCTCATCAACCACAGAAGCATTCCACACCAGGTGACTCTGAGCTATGGGATGTTTGAGAACAAGATGAACAGCATCGAGGTGAAAGGACGCTTCTCTAAGGAGGAAGACCCCTCCAGGTTTAAGACTGTCCACTGCATGCTGTATCCTTTCACCAGCTGGTGTCCTTGAACACTTCATAGAAAACTACAACTTCCAAACACACATGGGATAAGGCTGGTAATCCTGCTGGATGAAGTACTTTGCCTGGGTATTGGCTAAATGCAGAGAAAAACGATGGATATACAGTAATTTGATGGAACAATTTGCAGACACCATAACTGGAGAATCACAAAGCAGAAGTGAAGTCTCGGAGGACAGACAACTCAACAGGTTTCCCTGTACCTGCTTATAAAACAGATCAGATGGACACTCGTGGATTTAGAAAAGAGGATATTAACAGGATCCTAACTACAAACTGAGAAAGGTTTTTCTCTACTTCACCTGTCTGCTACAAACAGATGGTTTCATGCAAATATTTTGGACTTTTTGCGTCTTCACTAATGAATTTTTGTTTGGAGGATTTTATATGTGGGTGTGAAGCACTTAAGACAAAGCAGCACTTGTGTTTTTCACTTGAATTTCATCaagttgttttgtttaaaataataaacatgaaattgtacata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K05948 FNG; fringe

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4998 lncRNA upstream 8433 11076853 ~ 11077060 (+) True G3607
TU4990 lncRNA upstream 34671 11050086 ~ 11050822 (+) True G3600
TU4912 lncRNA upstream 61885 10926980 ~ 11023608 (+) True G3530
TU4887 lncRNA upstream 130557 10906305 ~ 10954936 (+) True G3507
TU4907 lncRNA upstream 193863 10891304 ~ 10891630 (+) True G3527
XR_005641205.1 lncRNA downstream 619 11119952 ~ 11127420 (+) True LOC120571013
TU5001 lncRNA downstream 1921 11121254 ~ 11122462 (+) True G3610
TU5002 lncRNA downstream 3253 11122586 ~ 11123257 (+) True G3611
TU5015 lncRNA downstream 165751 11285084 ~ 11285418 (+) True G3624
TU5017 lncRNA downstream 350249 11469582 ~ 11469817 (+) True G3626
XM_039794914.1 mRNA upstream 63374 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA upstream 63374 10996730 ~ 11022119 (+) True trmt1
XM_039819474.1 mRNA upstream 133262 10936550 ~ 10952231 (+) True LOC120570847
XM_039794714.1 mRNA upstream 184769 10677339 ~ 10900724 (+) False cacna1ab
XM_039794706.1 mRNA upstream 184769 10677339 ~ 10900724 (+) True cacna1ab
XM_039817061.1 mRNA downstream 70449 11189782 ~ 11495847 (+) True LOC120569250
XM_039794147.1 mRNA downstream 567645 11686978 ~ 11692071 (+) True lgals2b
XM_039822793.1 mRNA downstream 1012511 12131844 ~ 12136341 (+) False LOC120573162
XM_039822715.1 mRNA downstream 1012520 12131853 ~ 12136341 (+) True LOC120573162
XM_039815965.1 mRNA downstream 1027931 12147264 ~ 12156380 (+) True grap2b
TU4393 other upstream 694148 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 949334 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 961375 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1312558 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1584364 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1077313 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1566667 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1673472 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 1860682 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 1965790 13085123 ~ 13090460 (+) False pla2g6

Expression Profile