RNA id: TU4907


Basic Information

Item Value
RNA id TU4907
length 327
lncRNA type intronic
GC content 0.54
exon number 1
gene id G3527
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10891304 ~ 10891630 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGTCAACAGTGTATGACATAAGCATGGACTGGCCTGATGTGCGACTGTTGGCCTGTACGGGGGGATTGGCAGCGTGCCGGCATGTCATTAGTCATGCATGACATGGCAGAGCTGAGTTTCGCAGTGGATGTGATGGAGAGGAAGCGGTGTACCAATGAGGGAAAGTGTTGCTTTAGCCAAAGGCTGTTATTCCAAAGCCTGAAAGGTGGAGAGAAAGttggacagagacagagtggcTGTGTCATGTTCAGCACTTCTGTCTCCCTTAAGTTGCATGACGCCATTGTTTGGAACTTTTCAGCGCATAATTTGTTACAACTAGGGg

Function

GO:

id name namespace
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4906 lncRNA upstream 676 10890336 ~ 10890628 (+) True G3526
TU4905 lncRNA upstream 6006 10884890 ~ 10885298 (+) True G3525
TU4896 lncRNA upstream 21437 10869659 ~ 10869867 (+) True G3516
XR_005639311.1 lncRNA upstream 441377 10446927 ~ 10449927 (+) True LOC120559544
XR_005639325.1 lncRNA upstream 466999 10422208 ~ 10424305 (+) True LOC120559586
TU4887 lncRNA downstream 14675 10906305 ~ 10954936 (+) True G3507
TU4912 lncRNA downstream 35350 10926980 ~ 11023608 (+) True G3530
TU4990 lncRNA downstream 158456 11050086 ~ 11050822 (+) True G3600
TU4998 lncRNA downstream 185223 11076853 ~ 11077060 (+) True G3607
XR_005641205.1 lncRNA downstream 228322 11119952 ~ 11127420 (+) True LOC120571013
XM_039803602.1 mRNA upstream 229073 10655186 ~ 10662231 (+) True wdr83os
XM_039812002.1 mRNA upstream 245214 10645251 ~ 10646090 (+) True LOC120565892
XM_039814785.1 mRNA upstream 257916 10631779 ~ 10633388 (+) True LOC120567770
XM_039811974.1 mRNA upstream 397410 10474106 ~ 10493894 (+) True LOC120565884
XM_039801493.1 mRNA upstream 417759 10464821 ~ 10473545 (+) False LOC120559619
XM_039819474.1 mRNA downstream 44920 10936550 ~ 10952231 (+) True LOC120570847
XM_039794914.1 mRNA downstream 105098 10996728 ~ 11022119 (+) False trmt1
XM_039794903.1 mRNA downstream 105100 10996730 ~ 11022119 (+) True trmt1
XM_039816214.1 mRNA downstream 193863 11085493 ~ 11119333 (+) True mfng
XM_039817061.1 mRNA downstream 298152 11189782 ~ 11495847 (+) True LOC120569250
TU4393 other upstream 499959 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 755145 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 767186 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 1118369 9771575 ~ 9772935 (+) True G3148
TU4305 other upstream 1390175 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1305016 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 1794370 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 1901175 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2088385 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 2193493 13085123 ~ 13090460 (+) False pla2g6

Expression Profile