G105985


Basic Information

Item Value
gene id G105985
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 18665991 ~ 18674469 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142322
GTGCACTGTATAATACAGGAGTGAGGTGTACTCATATTTATGTTTGCATGAAGAAAAGAACCAGAGAACCATGTTTGCTTGGTACTATCAGATTTATTTACAGACGTAAGTGGGAGACGATCTCCCTTGTGCAATTACTTACgggaattcaattcaatttttcaaATAAACAGCAGGGATTCTTGTATTGTGACACAGAAAAAGCTAAATTGAAAATGACCACTTCAATGCTTGGCATttttatagcatgttgaaattATATTGTGATGCAATATAAAAATGTGATAAACCCAACACTATTATTTAGAATGAACAATGTTGATTTAAAGCAGAACAATATCAAAAATACTGaagttgaaataataataattaaaataaaaaaaatcaggtcatcatacacactcacacggTAAAATAATATGTTCTtccatataataaaaaaaagctgtaATTGTATGGCAAACATGCCGCAAGTTTAGGCACAACAGCAGTCATCCTACTACACAATACTCTGCATGCCAACAGAGAAAAGCACTACATAACTACAAAGCTGTGAGcttattcaaaataaaaaaaataagaaatgagGCAACTGAGAATTATGAATTGAAATAGCTGGTCAGTTTTCACGAGGCAATTCTAAAGTGATTAGCTTGAGCAAAAGGACTGACAAGATATTTCAACAACTCCAATCTCATGCCATCACTGACTATGGAACGAGGACAGCAAGGCAATGCGCGCCAATGCATCTATTAAGTGACAGAAcaacaataatacaaaaaaaagaaagaaaacaccatCTTCAGGGATGACAATGAAGGTACTTCATATGGTGTTTTATTTGGGCCAATGAGCTGGAGGAGATAGGAGAGGGGTGGTGGGGACTAATAGAAGATTGAAATCCATGTGGGTAGGTCTCGGGGAGGAGTAACAGTGCGGTGATGTCTCTGGGGCTGGTGAGCTAATACTACAGGTGGTCGTCATTCCGCTCAGCCTCAGTACATTTGCAAGGAGGCAGAAGAAGGCAGGAAAGCAATCGAGCAACAGAGGTGTTAGTACACAGCCAGTGTGGCTTCAGAAGCCTGAAGGTGTTAAAACATTCATGTCCCGAGGTTTAAGTTTGTGTGGCCGTGTGGGCGCTCGTTTGGCCTCAATGCCCGAGATTTCGATCTTGGGGGGCATGAACTTGGCAGGGTCGTCTACCTTGAAGTTGACCTGGTTGTTGGTGCCATCCATGGTAGAGGATTTCTGCATGCCGAAGTAGGACTGCAGTGAAAAGCTGTGCTGGTTTCACAGCCTGGATCAGTCGGGGACTTCTGTACCACGGGTCGGGTTCCAAAGAAGCTccacttctctcctcctcctccctcatttCCTCCCATGTCTGTGCTGGGGTTGGGACAATTGAGATCTGGGTTGGCAAGAAAAGGCGCAGGACTCAGCTGGAACCAGCTCTGCGACTAACAGCCGGTGATGAGTGGGGACTAACACAGGGGGTGACGCTGGGGGTGACGGAGGGGGTGACAGAAGGGGTGCCACTTGGGGTGGATTGTGCTGATGTTGTACACCTGTCCTCCTTGAAGTCCCCGCTTGGCATTCTCAACTTCTTTTTATGATAAGATTTCTTTGACGTTCTAGTCCGACAGATTCCTTAAGTTTGTCCATATTTAGCTGTTTTAACAAGTTGTTTTCTCGAAAACTCAAACGATTGCGTCTGATCACACTCAACAGTAGGCCACCAAAACGTCTCTTTTGTTAGAAGCTCACTGATTGGTCCGTTTGAGAAAATAAGGGGGCTCGATTCATTTAAGGGCGTTGCTTGGCAACACTACAGCCGGAAGCTGTAGTCTATGGAACCATCTCGGAGCTGATTACATAATGTGTTTACCAAGATGTTATTCTATGGTTTACCCTGCAGtccccagcgctgtggagataggtctggcaatgcgagactagcagtCAATCAACAGGCTAAAATATAACATTATCATATAATTTCTCACAACAGCACTTGAGtaataacacagacacaatgtTTTTTCTTGTAGGAATAAAGTCCTGGTTATGTAGTACTTGTTATCAGGCCACAGTCAccaggaaaaagaaaacacaacctTTGTGCATCCACACACTGTGTCACACAGTCTGTTTGTATGCACTGTGACCCTCCTCTTTTGAAAACAGTCTTTTCTAAACCTTCCATCTGAACCCATGTACAAAAGTACCTAATCC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:1901265 nucleoside phosphate binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0043167 ion binding molecular_function
GO:0043168 anion binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU142322 True 2235 lncRNA 0.43 4 18665991 18674469

Neighbor

gene id symbol gene type direction distance location
LOC120566670 NA coding upstream 45718 18617455 ~ 18620273 (+)
tmem126a LOC100708117 coding upstream 114285 18550081 ~ 18551706 (+)
phykpl phykpl coding upstream 267919 18393839 ~ 18398072 (+)
LOC120567061 NA coding upstream 498890 18161343 ~ 18167101 (+)
LOC120567062 NA coding upstream 508581 18091770 ~ 18157410 (+)
LOC120566726 NA coding downstream 370164 19044633 ~ 19048608 (+)
arl3l1 LOC103135527,LOC103354384,LOC104927064,LOC106905160,LOC100709097,LOC107094991,LOC102235273,LOC106517448 coding downstream 374914 19049383 ~ 19053015 (+)
LOC120567130 myoz3,LOC103354386,LOC102192149,LOC102796402 coding downstream 394937 19069406 ~ 19073864 (+)
LOC120567306 ndst1,LOC104927060 coding downstream 416829 19091298 ~ 19128318 (+)
cd74a NA coding downstream 454838 19129307 ~ 19133969 (+)
G105959 NA non-coding upstream 59067 18606410 ~ 18606924 (+)
G105944 NA non-coding upstream 112192 18552100 ~ 18553799 (+)
G105910 rack1,gnb2l1 non-coding upstream 253497 18408264 ~ 18412494 (+)
G105892 hnrnpab,LOC103359197 non-coding upstream 263896 18401266 ~ 18402095 (+)
G105894 NA non-coding upstream 265309 18365603 ~ 18400682 (+)
LOC120566919 LOC106517507,LOC108240586,LOC103471261,LOC106920872,LOC106964884 non-coding downstream 38031 18712500 ~ 18721760 (+)
G106006 NA non-coding downstream 240796 18915265 ~ 18920309 (+)
G106080 rbm22 non-coding downstream 399513 19073982 ~ 19075573 (+)
G106120 pdgfrb non-coding downstream 504469 19178938 ~ 19179637 (+)
G106147 LOC102076833,LOC102195147,LOC102293447,LOC102077094 non-coding downstream 545084 19219553 ~ 19219992 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 766260 17890170 ~ 17899731 (+)
G105677 NA other upstream 980292 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 1201769 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 1305729 17357508 ~ 17360262 (+)
G105542 NA other upstream 1514484 17141983 ~ 17151507 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other downstream 289465 18963934 ~ 18969946 (+)
G106237 spock1 other downstream 930371 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 1354394 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 1677252 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 2260260 20934729 ~ 20947415 (+)

Expression


Co-expression Network