LOC120567306 (ndst1,LOC104927060)


Basic Information

Item Value
gene id LOC120567306
gene name ndst1,LOC104927060
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19091298 ~ 19128318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814248.1
aaatatttttaaactcGCTGCTCAAGCTATCACTTAATGATCTGCTGCAGTTCTTTGAGCAAAACTTCTCAATTAGCTGagcatttgttgtattttagtttgtttgcgTCTCAAACTCTCTCCTTTTTGTCTTTTGCAATTAATAGGCATATTTCTGTGCTTGTGGTGTAGTTGCTTGTCGGGCTGCTGCACCATCCGTTGCGCAGCCTTCTTCTTTTATCCACATCTGAATCGCAGCCACTAGCTTGATTCATGTGATTGACAGGCCTGGTTAGAATGGGGGAGTGAGTTTTTAGTAAGCATGTTGTTTACTCTGCTTCCCTGACAGTCCTTGATGAGCCTACAGATGTTTCCAGAAAGCTGTAAATATCTGCTGTGTGCTCTAATATCAGATGAACAACCTATCCGATCGTATGGATATCTCTGCCTGGAACCTTTTTTAGATGGTCTAAAGGCCTAAATGAAAACATCACGCAAGGAGCCGGCGGCAGCATCAACTTTTGAAGGCTGATCCAGACATCTGTGTTAACATCATAGTGCATGGCGGCACTTTATGTTGTCAAGGTGAGGAGATTCGATCCTAAGGGAATGGTGCTGCTGAGATGACCTGCGTGACATTGCTTTTCTCAAGAGATCATTCTCCAATCAAAAGAGCGGAGGGAAATCTACCCGGGACATGGTTGGGAGGTTCACATGATGGACAGGTGATGGAGTCTTCCATCATCTTTCTCCACCAGTGACTCGGCCTGCCAGCCCTCCCTCTGAGGCAGAAGTGTGTACCAGCGGTCCAAGGCCCCCTATTTCTCTGCCATGGTGACATAAGCAGCGCTGCAATATGAGGGAGAGCCAACGTGAGACCGTCTCATTTCTTTCTCCagtagctgctgcagctgctatCTTCACGCCGTTTGTGTTTAGCTCCATAACAAGACTGACCCTTGTTGTGAGTAATCCCTGCTCgccgtttttatttatttttttaccctcACCGAGCGAGACTGTCCCCGTGTTGCTGGGCTGCTGGGGCGGAGCGGTGTGGCGTGAGACGATGCTGGGATGCGTGACACGCCTCCGTCGGCTGGTCCGTCTCCTCCCCCTGCagacctccctcctcctcctcttcctcttctgcaCTGTCAGCGTCTGCATCTCGGCCTACTTCCTCTATGGCGTCAAGCGGGAGCTGGAGCCGTCAGGAGGGGGCGTGTCCGGGGCAGATGGAGCATCCGCCGACTCGGACGACCCGAGGGTCACTCCGTCCCGGCTACTACCTTTGCGGGGCGTCTCAGGGGGACCTGGGGTGGATCCTGGAGGGGCCAGGACAGATCCTGTGGTTCTGGTGTTTGTGGAAAGCCAGTATTCTCAACTGGGTCAGGAGATTGTGGCCATCTTGGAGTCTGGCCGGTTCAGGTACCAGACTGAGATCTCTCCTGGTAAAGGGGACATGCCCACAttgacagacaaagagagagggcGTTTCGCACTGGTGATTTATGAGAACATTCTCAAGTATGTTAACTTGGACGCCTGGAACCGAGAGCTGCTGGACAAGTACTGTGTGGAATATGGAGTGGGCATCATTGGCTTCTTCAAGGCCAATGAAAACAGTCTGCTCAGTGCACAGCTGAAAGGCTTCCCCCTCTTTCTTCACTCTAACTTGGGTCTGAAGGACTGCGTTGTCAACCCCAAGTCCCCCTTGCTCTTTATCACTCGATCGGGGCAGCCCTTGCCAGGTCCCCTCCCCGGGGACGACTGGACCGTTTTCCAGTCCAACCACTCAACGTACGAGCCCGTACTGCTGGCCAAGACCCAGTCAGCTGAGAGCGTTGCATCGATGGGGCAGAATGCTGCTCTGCTCCCGTCGGTGGTGCAGGACCTGGGGCTCCATGATGGTATCCAGAGGGTCCTGTTCGGCAACAACTTGGTCTTCTGGTTGCACAAGCTGGTGTTTGTGGACGCTGTGGCCTTTCTGACGGGGAAGAGGCTCTCGTTGTCCCTGGAGCGCTACATGCTTGTGGATATAGATGACATCTTTGTGGGCAAAGAGGGCACACGCATGAAGGTGCTTGATGTTAAGGCCCTGCTGGAGACACAAAGGGAGCTGCGCACCCATGTGCCCAACTTCACCTTCAATCTGGGCTTCTCAGGGAAATTCTTTCACGCTGGAGCTGATGAGGAGGACCTGGGAGATGACCTGCTGCTTTCCTGTAAGGAGTTCTGGTGGTTTCCTCACATGTGGAGCCACATGCAGCCCCATCTATTCCACAACCAGTCCGTGCTGGCCGAGCAGATGTTGCTCAACAAGAAATTTGCCATGGAGCATGGGATCCCCACTAACATGGGCTATGCGGTGGCGCCCCACCACTCTGGCGTCTACCCTGTCCACATGCAGCTGTACGATGCCTGGAAGAAGGTGTGGGGCATTAAGGTCACCAGCACTGAGGAATACCCACACCTGAAGCCTGCTCGCTTCCGGCGAGGTTTCATCCACAGCGGCATTAGCGTGCTACCCAGGCAGACGTGTGGTCTTTTCACACACACCATCTTCTATAAAGACTACCCAGGCAGtccgaatgaactggacaagcTGATCAATGGAGGAGAACTCTTCCTCACTGTTTTGCTGAACCCTATTAGTATCTTCATGACCCATCTGTCCAACTACGGGAACGATCGTCTCGGCCTGTACACCTTTAAAAGCCTGGTGACGTTCCTCCAGACGTGGACTAACCTGAAGATGCAGACCCTGCCACCTGTTCAGCTGGCTCAGAAGTACTTCAGCCTGTTTCCCTCCGAGAGAGATCCACTATGGCAGGATCCTTGTGAGGACAAAAGGCACAAGGACATCtggtccaaagagaaaacatgtGACCGCTTCCCCAAACTGCTCGTCATCGGGCCTCAGAAGACAGGGACGACAGCGCTCTACCTGTTTCTTGGCATGCACCCTGACCTGACCAGTAACTACCCCAGCAAGGAGACCTTTGAGGAGATCCAGTTCTTTAATGGGCACAACTACCACAGAGGCATTGACTGGTATATGGAGTACTTCCCTCTGCCCTCCAACACAAGTTCAGACTACTACTTTGAGAAGAGTGCCAACTACTTTGATTCTGAGGTGGCTGCTCAGAGGGCTGCAGCTCTCCTGCCCAAAGCCAAGATCATCACCATCCTCATCAACCCGGCGGACAGAGCTTACTCCTGGTACCAGCACCAAAGAGCCCACGATGACCCGGTGGCGTTGAAATACTCCTTCCACAACGTCATCACCGCAGGCCACGACGCTCCAGTCAAACTACGGGTCCTCCAGAATCGTTGTCTGGTGCCAGGCTGGTACGCCATCCACCTGGAGCGCTGGCTCAACTACTACCACTCCAGCCAGTTGTTAGTCTTGGATGGGCAGATGCTGAAGACCGAACCTGCTTCAATCATGGATAAAATCCAGAAGTATCTGGCCCTGGTCAACGTCATCAACTACCACAAGATCCTAGCGTTTGACCCTAAGAAAGGATTCTGGTGTCAGCTGCTGGAGGGAGGAAAGACCAAGTGTTTGGGGAAGAGTAAAGGGCGCAGGTACCCAGACATGGACCCTGAGTCCCAGGGCTTCCTCAGGGAGTACTATAGGGATCACAACATTGAGCTGTCCAAGCTGCTCTACAGGATGGGTCAGCCGCTGCCCAGCTGGCTCAGAGAAGAGCTGGTCCACACCAGGTAGCAGCACCACAGGGGGGAGACCACAGCTCCACACACTGAACCACTGCTCCGCCCTGCTGAGGAACTCTGCCCGAGTGGCCTGAAATGTTTGAAGATCCCAAATAGTTTTGAAAGAGACTGAAATATATCCAAATTAGAGGATGGGATGCCCAACCAGAACTCAAAACGCAACTGTGATCTTCCCAAACGAACAGGACAACATTGGATAGTGAGCAAGGAGAGAGTGTAGTTGCTTTCAGCAGCTGATAGcgctctcctccctccctgatGAGCTTCGAGATGCTGTGTCTCCCCTGCAGGACAAACCCGGACCATGGATGCTCTAAAGCGGGCCTCCGCTGCGTCCTGCAGAAGAAGGAAAGGCTCAGTGACGCACAGCAGGGACCTTGAGGGTTTGATAATCACATCCGTGCTCTCCTTAATCAATCCTTCTCAGCTTCGCATGAACTTCATCTTGAAaatcaaaggaaggaaggaaggaagaaaaaaaaataaacgtcTGAAGCTTGAGCAGTCTTCACAGTTTCAGCTCTGGGAAACCGGTGGAAGCAATGATCACGACATCACCTGTGTCTCCAGCTATGAGTTGAGGTGTTAGGAGCACATTAAAACAGGCAACTTAACATGAACTTAAATGGATGACAGCCTGATTGACAGAGAGACATTGGTTGCAAATGCCTTTGACGTAAGTAAGTGTTTATAAGTGTTTGTATGAGAGGAGATGAAATGGGACATCTGGAGTCTTGACTCAGGCTGCATGTTGTAGCCTTACTCGATAGGCCTTGGTAGAATCTAGTTATCGCATTTACAAGTGCCAGGACAGACTCTTCATTAAAATATTACCACGTGGACTTTTgagggttcttttttttttttttttttttttaaggttttatgTCTTCTTTTCTCAGATTTTGTTTTAACGTATCTATAATGCTGACAGCAATGCATTATTGTAGAATGTACCAAAACTAAACATCTTAGCTCAGTTTTCTCATATAGGCCAGGTGTACACGAGACTTGTTTGTTCAAACTGTTCGGCTCAGCCTCCTCTCTAGTCAGTTTCAAGACCATTAAATTGGCTAAAGAAGGTACAGTAGGATAGATGTTGAAAGCACAATATTTAAGGCACTCAAGTGAACATCGATTCTGAACATACAGGTTACTGGAAAGCACACTAACAAAATGCATCCTACTACAATCTGTGAAGAAGATCATAAGCTAGCTACTGTATGCTTAATTACACACTCTGGTCAGAGAGATTTAGATAGTGTACAGAACAAGATTGCGCATTTCAAATCTGTTTTCAGCATtgaatttttaattttgttgttgtcgtcaaaactgtatattttgtctttatattttgtttcatttcctTTAGTAGTGGAGTTTAATTTTGGGGTAAAAAGCTGTCTCTGGGAAAAAAACGTTTAAAGTTGCCAGGCAAACCAACAGTAGGCCCAGTGAGACCACACAGACGTTTGGTTGTCGGTCAAGGTGTTACCACTGCAACTAGATGTCAAGCATAGATAACAAAAAGCTGCTCTTATTGCAATAGTTTTGTACAATGTTCTGATGTAATAACAATGCACATGTTGGTCATTTATTTCCTGACTTTGTAATGTACATAATACGCAACCCTCGGTAGACCTAAATTATTGAATGTGTTTTGGGTTTACACTCTCCATCAGCACATTCCCATAGTGTGAAATGTCAGTGCTGTACTGAGGGGAGTTTGGATTACTTCATCGTGCGGGGCTGTGTCTAAGATTGTTTCCTCTCATGTCCTCTCACTGCCAACTATTGTACACAGGTACTGAGTCTCTCCATATAAAGTATTAAGTGATAACACATAACGGCAATGATGGTACTAATCTCCTGGACTGTATGATAAAGATTTGTAATTGTTGTCAataatttttacagtgtaaCTAATATTGTCGGTGCTTTTtaatttgcaaataaaacaCCACTGTATTTTTCAGTA

Function

symbol description
ndst1 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to act upstream of or within several processes, including animal organ development; positive regulation of signal transduction; and protein sulfation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG:

id description
K02576 NDST1; heparan sulfate N-deacetylase/N-sulfotransferase NDST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814248.1 True 5704 mRNA 0.49 16 19091298 19128318

Neighbor

gene id symbol gene type direction distance location
LOC120567130 myoz3,LOC103354386,LOC102192149,LOC102796402 coding upstream 17434 19069406 ~ 19073864 (+)
arl3l1 LOC103135527,LOC103354384,LOC104927064,LOC106905160,LOC100709097,LOC107094991,LOC102235273,LOC106517448 coding upstream 38283 19049383 ~ 19053015 (+)
LOC120566726 NA coding upstream 42690 19044633 ~ 19048608 (+)
LOC120566670 NA coding upstream 471025 18617455 ~ 18620273 (+)
tmem126a LOC100708117 coding upstream 539592 18550081 ~ 18551706 (+)
cd74a NA coding downstream 989 19129307 ~ 19133969 (+)
LOC120567307 LOC104965705 coding downstream 9836 19138154 ~ 19143724 (+)
hmgxb3 LOC104941520 coding downstream 18507 19146825 ~ 19160247 (+)
cdx1a NA coding downstream 80311 19208629 ~ 19211883 (+)
tcof1 NA coding downstream 184432 19312750 ~ 19318290 (+)
G106080 rbm22 non-coding upstream 15725 19073982 ~ 19075573 (+)
G106006 NA non-coding upstream 170989 18915265 ~ 18920309 (+)
LOC120566919 LOC106517507,LOC108240586,LOC103471261,LOC106920872,LOC106964884 non-coding upstream 369538 18712500 ~ 18721760 (+)
G105985 NA non-coding upstream 416829 18665991 ~ 18674469 (+)
G105959 NA non-coding upstream 484374 18606410 ~ 18606924 (+)
G106120 pdgfrb non-coding downstream 50620 19178938 ~ 19179637 (+)
G106147 LOC102076833,LOC102195147,LOC102293447,LOC102077094 non-coding downstream 91235 19219553 ~ 19219992 (+)
G106149 NA non-coding downstream 91755 19220073 ~ 19281250 (+)
G106153 NA non-coding downstream 125236 19253554 ~ 19257739 (+)
G106148 LOC102076833,LOC106676291 non-coding downstream 146370 19274688 ~ 19280482 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 121352 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 1191567 17890170 ~ 17899731 (+)
G105677 NA other upstream 1405599 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 1627076 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 1731036 17357508 ~ 17360262 (+)
G106237 spock1 other downstream 476522 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 900545 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 1223403 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 1806411 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 2151369 21279687 ~ 21283229 (+)

Expression


Co-expression Network