G106080 (rbm22)


Basic Information

Item Value
gene id G106080
gene name rbm22
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19073982 ~ 19075573 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU142458
AATGACAAAATTGGGTCAATTTAATGACAAGTGAAAATAACATTCAAAGAAAGCCTTACAATAAACAAAGTCATTATGCTGTGGAATATTAAGAttgtgtcaaataaaaaaaaaaatgattcaaaattaacatgtttaaaaatgcTCCTCAGAATTCTACCCCATGTTGCACGATGTGACAAATTCAAGTTTAACTGACGGTACACATTTTTATATGTACAATGGCTCCAACCGCAAGAGCCTGTAAAAACCATATGGCCCCGATAATATTGGCCAGTACTCTCATGTCTGAAGTCTGCTGATGCCGTTCTGGTACTTTTTTTAACTGCAAGTAGCGACAAAGTCATCTTGTACTCTCCTGGTTGTGGTCTCTCCAGACACAGACGGTGCTCCTTTAGTTCACTCACTGCAGGTGGCATAATAAATCAGATGTTTATCCTGTAAGACATAACTGCTTTCTCCCAGAAGTAGTCTGCAGCTTTCAGGCCCACTGACAGCATCTGAAGTAAATGCACCTGACCAGGTTTGACCTAAGGAAAAGAATGACACCTAATCGCAGTATGACTTCAATCTAGCAGCTAATCACCATGACGTGAGCCATGTGCGGCGTGGGCACCCATGCGCTGAGGATCCTGGGAGGGGTAGTGGATTTGACCTGGAGGTCTCATGCTCATCGGAGGGGGCATAGGGGGAGCCATGTGACCCATGGGGTGAAACATTGGAGGGCCGAAACCTGGAGGAGGCGGGTTGATGCCTGGAGGTGGGGGCAGAGCAATGTTCATGACGGCAGGAGAGGTGCTAGGGTCCAGGTTAAAGTAGTTTGCAGGTGCTTCTTCATCTAAAGCTGGTGGTGGAGGAAGAGCTCCAGGAAGTCCAGGGACAGGATCAAGTCTGGTGCCCATCTCACTGATGCCATCTTTGATGCCCTCCTTCCCTCTGGCTGCCTGTGACCTACAAAGACAAACCATACAAGTTATATATTAATCACATCACTCACTTTGTTTAACACTACTGAATGGTGTGTAGCAGCAGCATTCTGTCCAGAATAGAAAAGTTCCAAGTGACACGCCCTGCACAAACTCTTTGCCATGGTAAAGCTCTTACTGTGTctgttgttattttaaaa

Function

symbol description
rbm22 Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Acts upstream of or within chordate embryonic development. Located in nucleus. Orthologous to human RBM22 (RNA binding motif protein 22).

NR:

description
PREDICTED: pre-mRNA-splicing factor RBM22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142458 True 1126 lncRNA 0.45 3 19073982 19075573

Neighbor

gene id symbol gene type direction distance location
LOC120567130 myoz3,LOC103354386,LOC102192149,LOC102796402 coding upstream 118 19069406 ~ 19073864 (+)
arl3l1 LOC103135527,LOC103354384,LOC104927064,LOC106905160,LOC100709097,LOC107094991,LOC102235273,LOC106517448 coding upstream 20967 19049383 ~ 19053015 (+)
LOC120566726 NA coding upstream 25374 19044633 ~ 19048608 (+)
LOC120566670 NA coding upstream 453709 18617455 ~ 18620273 (+)
tmem126a LOC100708117 coding upstream 522276 18550081 ~ 18551706 (+)
LOC120567306 ndst1,LOC104927060 coding downstream 15725 19091298 ~ 19128318 (+)
cd74a NA coding downstream 53734 19129307 ~ 19133969 (+)
LOC120567307 LOC104965705 coding downstream 62581 19138154 ~ 19143724 (+)
hmgxb3 LOC104941520 coding downstream 71252 19146825 ~ 19160247 (+)
cdx1a NA coding downstream 133056 19208629 ~ 19211883 (+)
G106006 NA non-coding upstream 153673 18915265 ~ 18920309 (+)
LOC120566919 LOC106517507,LOC108240586,LOC103471261,LOC106920872,LOC106964884 non-coding upstream 352222 18712500 ~ 18721760 (+)
G105985 NA non-coding upstream 399513 18665991 ~ 18674469 (+)
G105959 NA non-coding upstream 467058 18606410 ~ 18606924 (+)
G105944 NA non-coding upstream 520183 18552100 ~ 18553799 (+)
G106120 pdgfrb non-coding downstream 103365 19178938 ~ 19179637 (+)
G106147 LOC102076833,LOC102195147,LOC102293447,LOC102077094 non-coding downstream 143980 19219553 ~ 19219992 (+)
G106149 NA non-coding downstream 144500 19220073 ~ 19281250 (+)
G106153 NA non-coding downstream 177981 19253554 ~ 19257739 (+)
G106148 LOC102076833,LOC106676291 non-coding downstream 199115 19274688 ~ 19280482 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 104036 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 1174251 17890170 ~ 17899731 (+)
G105677 NA other upstream 1388283 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 1609760 17458247 ~ 17464222 (+)
LOC120566324 LOC107089033,LOC103135614,LOC106925651,LOC106940816 other upstream 1713720 17357508 ~ 17360262 (+)
G106237 spock1 other downstream 529267 19604840 ~ 19652474 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 953290 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 1276148 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 1859156 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 2204114 21279687 ~ 21283229 (+)

Expression


Co-expression Network