jmjd6 (jmjd6)


Basic Information

Item Value
gene id jmjd6
gene name jmjd6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34642508 ~ 34647627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825413.1
CAAGCATTGTGTTGCCTGGCCAAGCCAGTTAGCGAGTGTGTCTCTTATTAGCTATTTATCAAACCGTGTCGACCGGGCAGGTTTTAAAATTGTTCTCACATTTGTTGGTGTATATTTGAAGACGTGTTAAACACACACCGACTTGTGGTTTTGTTGTCTGTTTGAAATAAATAAGGTGAGACTGTCAGAACAGcgcagctagctaacgttagccaggtAACGTTAATGTGTTGCTGTAGTATCCTCCGGGTTAGCTCGATCGCTAGCTGAGCAGCGCTAACACACGGGAACAGGAATGAACCATAAAAGTAAGAAGAGGATTAAAGAGGCGAAACGGAGCGCCAGACCCGAACTGAAGGACTCATTAGACTGGATAAAACACGATTACCATGAGGCTTTCGACCTGTCACACCGCACCGTAAAGGACAATGTGGAGCGCGTGGACACCCGCCACCTCAGTCCCGAAGAGTTCATCCGGCGATTCGAACGCCCCTACAAGCCCGTGGTCCTGCTGAACGCGCAGGACAGCTGGCCCGCCCGGGAGAAGTGGACCCTGGAGCGCCTCAAACGCAAATACCGTAACCAGAAGTTCAAGTGCGGGGAAGACAACGACGGCTACTCggtgaagatgaagatgaagtaCTACATGGAGTACCTGGAGAGCACGCGGGACGACAGCCCGCTCTACATCTTTGACAGCAGCTACGGTGAGCACGCCAAACGGCGGAAGCTGCTGGATGACTACCAGGTGCCCGTCTTCTTCAGGGACGACCTGTTCCAGTTCGCAGGAGAGAAGCGCCGGCCGCCATACAGGTGGTTTGTGATGGGCCCAGCCCGCTCCGGCACCGGCATCCACATTGACCCGCTGGGCACCAGCGCCTGGAACGCCCTGGTCCAGGGACACAAGAGGTGGTGTCTGTTCCCCACCAACACCCCCCGCGAGCTCATCAAGGTGGCCAGAGAGGAGGGGGGCAACCAGCAGGACGAGGCTATCACCTGGTTCAACGTCATCTATCCCAGAACCCAGCAGCCCAACTGGCCGCCCGAGTTCACGCCGCTGGAGATCCTGCAAAGACCCGGGGAAACCGTTTTTGTGCCTGGCGGGTGGTGGCACGTGGTCCTCAACCTGGACACCACAATCGCCGTCACTCAGAACTTCGCCAGCACCACCAACTTCCCCATTGTGTGGCACAAAACGGTCCGAGGGCGACCCAAACTCTCCAGGAAGTGGTACCGTATCTTGAAGCAGGAGAGGCCCGACCTGGCGGTGCTGGCAGACAAAGTGGACCTTCAGGAGTCGACGGGCATCGCGTCAGACAGCTCCAGCGACTCTTCGTCTTCGTCTTCCTCCAGCTCCTCTGACTCCGACTCTGATGCAGCGGAGGGAGACGCCGTGTCCCATCGCAGGAAGAAGAGACGGACCTGCGCCGCAGCGGCCAACGGAGACACCAGCAGCCAGGACGACTGCGTCAGCAAGGAGAGGAGCTCGTCACGGTGACCTCCGGCCGTTTGCAGCTGGTCATCACACAAACAGCTGCTTCCTGTCTAGGGCTGCATCCACACTGTTAACGTTTTGGTTTCAAATCAAAAATCTTGCTATTTTCACACTTTGGATGCCCTTTTGGTTTGAAATCTCTGAGGTTGTGTTGCACTCTCAGCAGCCGCAAACAAAGACCTCCCTAACTGATAAGACTGACCGCATTGttgtttccaaaggtctccatCTGTTCGTTTCCGATCTCTGTGGCGA
>XM_039825414.1
CAAGCATTGTGTTGCCTGGCCAAGCCAGTTAGCGAGTGTGTCTCTTATTAGCTATTTATCAAACCGTGTCGACCGGGCAGGTTTTAAAATTGTTCTCACATTTGTTGGTGTATATTTGAAGACGTGTTAAACACACACCGACTTGTGGTTTTGTTGTCTGTTTGAAATAAATAAGGTGAGACTGTCAGAACAGcgcagctagctaacgttagccaggtAACGTTAATGTGTTGCTGTAGTATCCTCCGGGTTAGCTCGATCGCTAGCTGAGCAGCGCTAACACACGGGAACAGGAATGAACCATAAAAGTAAGAAGAGGATTAAAGAGGCGAAACGGAGCGCCAGACCCGAACTGAAGGACTCATTAGACTGGATAAAACACGATTACCATGAGGCTTTCGACCTGTCACACCGCACCGTAAAGGACAATGTGGAGCGCGTGGACACCCGCCACCTCAGTCCCGAAGAGTTCATCCGGCGATTCGAACGCCCCTACAAGCCCGTGGTCCTGCTGAACGCGCAGGACAGCTGGCCCGCCCGGGAGAAGTGGACCCTGGAGCGCCTCAAACGCAAATACCGTAACCAGAAGTTCAAGTGCGGGGAAGACAACGACGGCTACTCggtgaagatgaagatgaagtaCTACATGGAGTACCTGGAGAGCACGCGGGACGACAGCCCGCTCTACATCTTTGACAGCAGCTACGGTGAGCACGCCAAACGGCGGAAGCTGCTGGATGACTACCAGGTGCCCGTCTTCTTCAGGGACGACCTGTTCCAGTTCGCAGGAGAGAAGCGCCGGCCGCCATACAGGTGGTTTGTGATGGGCCCAGCCCGCTCCGGCACCGGCATCCACATTGACCCGCTGGGCACCAGCGCCTGGAACGCCCTGGTCCAGGGACACAAGAGGTGGTGTCTGTTCCCCACCAACACCCCCCGCGAGCTCATCAAGGTGGCCAGAGAGGAGGGGGGCAACCAGCAGGACGAGGCTATCACCTGGTTCAACGTCATCTATCCCAGAACCCAGCAGCCCAACTGGCCGCCCGAGTTCACGCCGCTGGAGATCCTGCAAAGACCCGGGGAAACCGTTTTTGTGCCTGCTGTGTGTCCGCAGGCGGGTGGTGGCACGTGGTCCTCAACCTGGACACCACAATCGCCGTCACTCAGAACTTCGCCAGCACCACCAACTTCCCCATTGTGTGGCACAAAACGGTCCGAGGGCGACCCAAACTCTCCAGGAAGTGGTACCGTATCTTGAAGCAGGAGAGGCCCGACCTGGCGGTGCTGGCAGACAAAGTGGACCTTCAGGAGTCGACGGGCATCGCGTCAGACAGCTCCAGCGACTCTTCGTCTTCGTCTTCCTCCAGCTCCTCTGACTCCGACT

Function

symbol description
jmjd6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and single-stranded RNA binding activity. Acts upstream of or within phagocytosis. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Is expressed in brain; hatching gland; heart; pronephros; and somite. Orthologous to human JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase).

NR:

description
PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

GO:

id name namespace
GO:0006909 phagocytosis biological_process

KEGG:

id description
K11323 JMJD6; histone arginine demethylase JMJD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825413.1 True 1750 mRNA 0.56 6 34642508 34647627
XM_039825414.1 False 1384 mRNA 0.56 5 34642508 34646714

Neighbor

gene id symbol gene type direction distance location
LOC120574912 NA coding upstream 38727 34593951 ~ 34603781 (+)
LOC120574921 NA coding upstream 91793 34535960 ~ 34550715 (+)
LOC120574915 NA coding upstream 119808 34519324 ~ 34522700 (+)
LOC120575309 LOC107740693 coding upstream 346086 34290886 ~ 34296422 (+)
zgc:66474 NA coding upstream 423777 34213522 ~ 34218731 (+)
si:ch73-366l1.5 NA coding downstream 4926 34652553 ~ 34673832 (+)
LOC120574900 NA coding downstream 58452 34706079 ~ 34986840 (+)
LOC120574909 NA coding downstream 143101 34790728 ~ 34819071 (+)
LOC120574911 LOC101470943,LOC102790796 coding downstream 172146 34819773 ~ 34828565 (+)
LOC120574908 NA coding downstream 190187 34837814 ~ 34847768 (+)
LOC120574936 NA non-coding upstream 1407 34639825 ~ 34641101 (+)
G160420 NA non-coding upstream 1874 34640186 ~ 34640634 (+)
G160402 NA non-coding upstream 36890 34549630 ~ 34605618 (+)
LOC120574933 NA non-coding upstream 361142 34279146 ~ 34281366 (+)
LOC120574928 NA non-coding upstream 369255 34272118 ~ 34273253 (+)
G160424 NA non-coding downstream 71 34647698 ~ 34649825 (+)
G160422 NA non-coding downstream 4808 34652435 ~ 34673402 (+)
LOC120574929 NA non-coding downstream 22191 34669818 ~ 34672738 (+)
G160426 NA non-coding downstream 37024 34684651 ~ 34684959 (+)
G160437 NA non-coding downstream 121122 34768749 ~ 34789364 (+)
G160318 LOC104961098 other upstream 458847 34183099 ~ 34183661 (+)
G160243 NA other upstream 474862 34167080 ~ 34167646 (+)
LOC120574293 NA other upstream 1099347 33463255 ~ 33543161 (+)
LOC120574300 NA other upstream 1330903 33307453 ~ 33311605 (+)
G159938 NA other upstream 1479697 33162395 ~ 33162811 (+)
LOC120574901 NA other downstream 201962 34849589 ~ 34928475 (+)
G160423 mvp other downstream 314473 34962100 ~ 34966949 (+)
LOC120575316 NA other downstream 398090 35045717 ~ 35055656 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other downstream 978888 35626515 ~ 35648984 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other downstream 1441993 36089620 ~ 36125552 (+)

Expression


Co-expression Network