RNA id: XM_039825413.1


Basic Information

Item Value
RNA id XM_039825413.1
length 1750
RNA type mRNA
GC content 0.56
exon number 6
gene id jmjd6
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34642508 ~ 34647627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCATTGTGTTGCCTGGCCAAGCCAGTTAGCGAGTGTGTCTCTTATTAGCTATTTATCAAACCGTGTCGACCGGGCAGGTTTTAAAATTGTTCTCACATTTGTTGGTGTATATTTGAAGACGTGTTAAACACACACCGACTTGTGGTTTTGTTGTCTGTTTGAAATAAATAAGGTGAGACTGTCAGAACAGcgcagctagctaacgttagccaggtAACGTTAATGTGTTGCTGTAGTATCCTCCGGGTTAGCTCGATCGCTAGCTGAGCAGCGCTAACACACGGGAACAGGAATGAACCATAAAAGTAAGAAGAGGATTAAAGAGGCGAAACGGAGCGCCAGACCCGAACTGAAGGACTCATTAGACTGGATAAAACACGATTACCATGAGGCTTTCGACCTGTCACACCGCACCGTAAAGGACAATGTGGAGCGCGTGGACACCCGCCACCTCAGTCCCGAAGAGTTCATCCGGCGATTCGAACGCCCCTACAAGCCCGTGGTCCTGCTGAACGCGCAGGACAGCTGGCCCGCCCGGGAGAAGTGGACCCTGGAGCGCCTCAAACGCAAATACCGTAACCAGAAGTTCAAGTGCGGGGAAGACAACGACGGCTACTCggtgaagatgaagatgaagtaCTACATGGAGTACCTGGAGAGCACGCGGGACGACAGCCCGCTCTACATCTTTGACAGCAGCTACGGTGAGCACGCCAAACGGCGGAAGCTGCTGGATGACTACCAGGTGCCCGTCTTCTTCAGGGACGACCTGTTCCAGTTCGCAGGAGAGAAGCGCCGGCCGCCATACAGGTGGTTTGTGATGGGCCCAGCCCGCTCCGGCACCGGCATCCACATTGACCCGCTGGGCACCAGCGCCTGGAACGCCCTGGTCCAGGGACACAAGAGGTGGTGTCTGTTCCCCACCAACACCCCCCGCGAGCTCATCAAGGTGGCCAGAGAGGAGGGGGGCAACCAGCAGGACGAGGCTATCACCTGGTTCAACGTCATCTATCCCAGAACCCAGCAGCCCAACTGGCCGCCCGAGTTCACGCCGCTGGAGATCCTGCAAAGACCCGGGGAAACCGTTTTTGTGCCTGGCGGGTGGTGGCACGTGGTCCTCAACCTGGACACCACAATCGCCGTCACTCAGAACTTCGCCAGCACCACCAACTTCCCCATTGTGTGGCACAAAACGGTCCGAGGGCGACCCAAACTCTCCAGGAAGTGGTACCGTATCTTGAAGCAGGAGAGGCCCGACCTGGCGGTGCTGGCAGACAAAGTGGACCTTCAGGAGTCGACGGGCATCGCGTCAGACAGCTCCAGCGACTCTTCGTCTTCGTCTTCCTCCAGCTCCTCTGACTCCGACTCTGATGCAGCGGAGGGAGACGCCGTGTCCCATCGCAGGAAGAAGAGACGGACCTGCGCCGCAGCGGCCAACGGAGACACCAGCAGCCAGGACGACTGCGTCAGCAAGGAGAGGAGCTCGTCACGGTGACCTCCGGCCGTTTGCAGCTGGTCATCACACAAACAGCTGCTTCCTGTCTAGGGCTGCATCCACACTGTTAACGTTTTGGTTTCAAATCAAAAATCTTGCTATTTTCACACTTTGGATGCCCTTTTGGTTTGAAATCTCTGAGGTTGTGTTGCACTCTCAGCAGCCGCAAACAAAGACCTCCCTAACTGATAAGACTGACCGCATTGttgtttccaaaggtctccatCTGTTCGTTTCCGATCTCTGTGGCGA

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process

KEGG:

id description
K11323 JMJD6; histone arginine demethylase JMJD6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641933.1 lncRNA upstream 1407 34639825 ~ 34641101 (+) True LOC120574936
TU217198 lncRNA upstream 1874 34640186 ~ 34640634 (+) True G160420
TU217177 lncRNA upstream 36890 34549630 ~ 34605618 (+) True G160402
XR_005641929.1 lncRNA upstream 361142 34279146 ~ 34281366 (+) True LOC120574933
XR_005641928.1 lncRNA upstream 361142 34279146 ~ 34281366 (+) False LOC120574933
TU217219 lncRNA downstream 71 34647698 ~ 34649825 (+) False G160424
TU217220 lncRNA downstream 71 34647698 ~ 34649825 (+) True G160424
TU217200 lncRNA downstream 4808 34652435 ~ 34672741 (+) True G160422
TU217201 lncRNA downstream 4808 34652435 ~ 34673402 (+) False G160422
TU217202 lncRNA downstream 4808 34652435 ~ 34672741 (+) False G160422
XM_039825426.1 mRNA upstream 38727 34593951 ~ 34603781 (+) True LOC120574912
XM_039825439.1 mRNA upstream 91793 34535960 ~ 34550715 (+) True LOC120574921
XM_039825432.1 mRNA upstream 119808 34519324 ~ 34522700 (+) True LOC120574915
XM_039826027.1 mRNA upstream 346086 34290886 ~ 34296422 (+) True LOC120575309
XM_039826025.1 mRNA upstream 423777 34213522 ~ 34218731 (+) True zgc:66474
XM_039826032.1 mRNA downstream 4926 34652553 ~ 34673832 (+) True si:ch73-366l1.5
XM_039825407.1 mRNA downstream 58452 34706079 ~ 34986840 (+) True LOC120574900
XM_039825416.1 mRNA downstream 143101 34790728 ~ 34819071 (+) True LOC120574909
XM_039825423.1 mRNA downstream 172146 34819773 ~ 34828565 (+) True LOC120574911
XM_039825422.1 mRNA downstream 172575 34820202 ~ 34828565 (+) False LOC120574911
TU217078 other upstream 458847 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 474862 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 1008370 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 1023301 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 1047129 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217208 other downstream 314473 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 398090 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 589669 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 978888 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1441993 36089620 ~ 36125552 (+) True G160851

Expression Profile