RNA id: TU217177


Basic Information

Item Value
RNA id TU217177
length 804
lncRNA type read_through
GC content 0.37
exon number 2
gene id G160402
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34549630 ~ 34605618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttctgtgggggtgtttggctcgaggtcattgtgcaaaggaccctagggtgaattactccgaaccatcactttaaggtccTGTCTCGTGAAGTGGACCTGTGTCAAAATCTGGTTTGAAGACCTATTGAATATTTCAGTTTCAGGGTTTGAGCCAAAGTGCGCCAAATTCCAACAATGTCCCATTGGCTGTTATTTAATTAGCGTGTATGGCAAATCAGTTTCTGATGCTTGGCAAATATGATTTTTTAGAGAGGGAGAAATGAATTCTGTGCTGTTTGGATTTTTAAAAGTTAGCCAGGATTACATCTTTTTGGTGTTCGATCATATCAACAGTAATGAGCCTTTCAGTCAATAATCATATTGTGTTAGCTGATCAGCACGTCATAATCCAGATGACAGAGATCTAATGAGTAAGTAATGTTTGtttgtatagcacttttcacagttaaaatcacaaagtgcttcacaataaattGGAAAACGATAAATAGAAGACATAAGAATACAAAGGAAAACATAGGTACATAAAATCAGCAACGCAAAGAGAGTGGAAGTGCGTTCCACATCCTGGGTGCCACTGATTGAAAAGATCGATCCCCTCTGGTTTTAAATTGAGTGCTGGAGACCACTAACAACATCTGACCTGATGACCTCAGACTCCGGGaataataaacttttaaatataattatatagttttttttatatatttaaaatgattgATTACAGAGAAAGTTAAAGGGCTGTCATATTCAAGTACAGCCACAAAGCATCTCTTTCTACATCTAAACAAGCTGCAAACTT

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641929.1 lncRNA upstream 268264 34279146 ~ 34281366 (+) True LOC120574933
XR_005641928.1 lncRNA upstream 268264 34279146 ~ 34281366 (+) False LOC120574933
TU217105 lncRNA upstream 276377 34272119 ~ 34273253 (+) True LOC120574928
XR_005641925.1 lncRNA upstream 276445 34272118 ~ 34273185 (+) False LOC120574928
XR_005641927.1 lncRNA upstream 302877 34244113 ~ 34246753 (+) True LOC120574932
XR_005641933.1 lncRNA downstream 34207 34639825 ~ 34641101 (+) True LOC120574936
TU217198 lncRNA downstream 34568 34640186 ~ 34640634 (+) True G160420
TU217219 lncRNA downstream 42080 34647698 ~ 34649825 (+) False G160424
TU217220 lncRNA downstream 42080 34647698 ~ 34649825 (+) True G160424
TU217200 lncRNA downstream 46817 34652435 ~ 34672741 (+) True G160422
XM_039825432.1 mRNA upstream 26930 34519324 ~ 34522700 (+) True LOC120574915
XM_039826027.1 mRNA upstream 253208 34290886 ~ 34296422 (+) True LOC120575309
XM_039826025.1 mRNA upstream 330899 34213522 ~ 34218731 (+) True zgc:66474
XM_039825440.1 mRNA upstream 376486 34170327 ~ 34173144 (+) True LOC120574922
XM_039825429.1 mRNA upstream 525071 34014534 ~ 34024559 (+) True sgf29
XM_039825413.1 mRNA downstream 36890 34642508 ~ 34647627 (+) True jmjd6
XM_039825414.1 mRNA downstream 36890 34642508 ~ 34646714 (+) False jmjd6
XM_039826032.1 mRNA downstream 46935 34652553 ~ 34673832 (+) True si:ch73-366l1.5
XM_039825407.1 mRNA downstream 100461 34706079 ~ 34986840 (+) True LOC120574900
XM_039825416.1 mRNA downstream 185110 34790728 ~ 34819071 (+) True LOC120574909
TU217078 other upstream 365969 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 381984 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 915492 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 930423 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 954251 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217208 other downstream 356482 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 440099 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 631678 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 1020897 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1484002 36089620 ~ 36125552 (+) True G160851

Expression Profile