RNA id: TU217200


Basic Information

Item Value
RNA id TU217200
length 1698
lncRNA type sense_over
GC content 0.52
exon number 4
gene id G160422
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34652435 ~ 34673402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGGGCGAGATGcggctcagtgtgtgtgtgtgtgtgtgactgtctggGTTAACACACACCAGCCGTCCCCTCAACGCACTTTTAACTTTATTTAGTAAATCCAGAAACCCGCCATCATGGACCTGGACCCGGCCGTCATCATCCCCGCCATCATTTTCACCGTCGTCGCCGTTTATTTCGCTTCTTCGTACCTGAACAAGAAGCCCGACTCCTCCGGCTCCGCAGCCGGGAAGAAGAAGCCTAAAGTCGGCTACGGAGACGACGTCCCCCGTCCAGAGCTCTGGCTCCGCGGCTCCCGGCGGAGAAGATCCCTGTTAAgGTTGCCCCAGAGCCGGTAAAAGCACCAAAACCTGCACCAGAGCCTGTAAAAGCACCAAAACCTGTTCCTGAACCAGTAAAAGCGCCAGAACCTGCCCCAGAGCCAGTAAAAGCACCAGAACCTGCACCAGAGCCGGTGAAAGCAGCACCAGAACCTGCACCAGAGCCGGTGAACGCAGCACCAGAACCTGCACCAGAGCCGGAAAAAGCACCAGAACCTGCCCCAGAGCCGGTAAAAGCACCAGAACCTGCACCAGAACCTGCACCAGAACCTGCACCAGAGCCGGTAAAAGCACCAGAACCTCCCCCAGAGCCGGTAAAAGCACCAGAACCTGCACCAGAGCCGGTAAAAGTGCCAGAGATTGTACCAGAACCTGAACTTGTCCCAGAAACAGTTGCAACACAAGAACTGGCTGCAGTACCTGAACCTGTGTCCGAACCTGAACCTGTCCCAGAGCCAGCTGCAGTGCCAGAACCTGCATCTGAGCCCGAACCCGAGCCCGAACCTGTCCCAGAGCCAGTCACAGTGCCTGATCCAGAGCCTGTGGCCGAGTCCGAACCTGAACCTGTCGAGGAGGTCTTACCTGAGCCGACGCCTGAACCTGCTGTAGAGGAATCACCAGAACCGGAACCAGAGACCGTCCTAAACAACGatgtGGCTGCAGCAGAAGAGAAAGTGACGTTCACCCCGGGGAAGAAGCAGAGCAAGTTTGAGACGCTGATGACgaaggaggagatggaggaggagcagagGGCTCCTGAATGATTCACACGAGACGTAGAAACACCTTcagcttctttctctttctttctcccggCTGACCCGCCGCGAGGAAGACAGCGAGCGCTGAAGCAACGGAACCGAGCGTCTTTTTATTTCTGGGTTTTCGAGAGCGTTCTGGTCCGAGCTGCTTGTGAATAGCTTAACGTCTTTACACCAAAGTGCCTTCAGGAAGCTGTGTTTTTACCCCAAAACTGTTCTGCTTTTAGCTTTTTGTGTCGaggattttttaaaacaaagggATGAAATCGGAGGAAACAGACAGAAGCTGTGTTTGGAACGGtttcccctcacacacacacactccacagacacactcttcacacacaaacacgcacagacacacacacacagaaacacacacacacctccccccCAATAGAAGTATTATGCTAGGGAACAGTTTGTAACACAGCTCGTGTGGACTTGTTGGACCCTTTGTTAAAACTATTAAACTGTGATTTGAATGAAGACTCTACCAGTAATAAACTGTCAGCCTGATGTTCTTACAGGAACTACGGTAGTCATCTTGTGTTTGATTGAAATGTTTCAACatgcaataaataaatgaataaatccaTGTGTGAAACCAGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217219 lncRNA upstream 2610 34647698 ~ 34649825 (+) False G160424
TU217220 lncRNA upstream 2610 34647698 ~ 34649825 (+) True G160424
XR_005641933.1 lncRNA upstream 11334 34639825 ~ 34641101 (+) True LOC120574936
TU217198 lncRNA upstream 11801 34640186 ~ 34640634 (+) True G160420
TU217177 lncRNA upstream 46817 34549630 ~ 34605618 (+) True G160402
TU217222 lncRNA downstream 11910 34684651 ~ 34684959 (+) True G160426
TU217236 lncRNA downstream 96008 34768749 ~ 34789364 (+) False G160437
TU217238 lncRNA downstream 96008 34768749 ~ 34789364 (+) True G160437
TU217251 lncRNA downstream 134867 34807608 ~ 34807815 (+) True G160449
TU217252 lncRNA downstream 135390 34808131 ~ 34808663 (+) True G160450
XM_039825413.1 mRNA upstream 4808 34642508 ~ 34647627 (+) True jmjd6
XM_039825414.1 mRNA upstream 5721 34642508 ~ 34646714 (+) False jmjd6
XM_039825426.1 mRNA upstream 48654 34593951 ~ 34603781 (+) True LOC120574912
XM_039825439.1 mRNA upstream 101720 34535960 ~ 34550715 (+) True LOC120574921
XM_039825432.1 mRNA upstream 129735 34519324 ~ 34522700 (+) True LOC120574915
XM_039825407.1 mRNA downstream 33338 34706079 ~ 34986840 (+) True LOC120574900
XM_039825416.1 mRNA downstream 117987 34790728 ~ 34819071 (+) True LOC120574909
XM_039825423.1 mRNA downstream 147032 34819773 ~ 34828565 (+) True LOC120574911
XM_039825422.1 mRNA downstream 147461 34820202 ~ 34828565 (+) False LOC120574911
XM_039825424.1 mRNA downstream 147461 34820202 ~ 34828565 (+) False LOC120574911
TU217078 other upstream 468774 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 484789 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 1018297 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 1033228 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 1057056 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217208 other downstream 289359 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 372976 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 564555 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 953774 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1416879 36089620 ~ 36125552 (+) True G160851

Expression Profile