RNA id: XM_039825426.1


Basic Information

Item Value
RNA id XM_039825426.1
length 1627
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC120574912
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34593951 ~ 34603781 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGACTTTAAAGATGAGCGACTCTTCCAAGAAAGAAGGTGACATTCTGCTGCCtgCAGAGCTGAGGATCGTCCTGCTCGGGATGGTTGGAGTTGGGAAGAGTGTTTCAGGAAACAAAATCCTGGGCAATGACCTATTTGACTCAAAGCGCTGTCCATCTGCTGTCACACAGAAGTGCCAGAAGGAAATGGGGAATATTAACAACCaaaatgtggttgttgttgataCTCCTGGTCTGTTAAGCATTGACCAAACAGAAGCGGAGATTGTGAGAGAGATCAAGAAATCCATCAATCTTGCCGAACCTGGTCCTCACGTGTTCCTGATTGTGCTGAGTGTGAAAGATAAAtacacaaagaaagaagaagacatgGTGAAAAGCATTCGCGATACATTTGGCAAAAACACAATGGATTACACTATGGTGTTGTTCACCCATGGAAAAGATCTGCAAGGTACCATAGAAGACTTTTTTCGTGGCAATGAAAATCTCCACGAGCTAATCAAAAAGTGCAAGTATGAATACCATCTTTTTGACAATCGCTCAGGGACCGACCAGGTCGAAGATGTCCCTGAGCGATTGTCTCTACTGAAGAAGATCAACGATAAGGTTCAGACAGCAGAAGGAAGATACTACACCGCTGAGATGCTCCAAGAGGCTGAAACTACCTTACAACAACAGGTACAAAATGGCCCAGAAGGAGGAACACGACCCAAGCTAGCTTATATTAAAGTTGGTTTGGGTGTTGGATGTCTGTTTGGATATCTTTCTTTTAATGGTCAGATGATGTCTGCCATAGGAGCGGTACTAGGAGCCGTAGGGGGTGGACTACTGTGCGCTGCACTGGCAAGTTTAGTGATACACACCCAAAAAAAGGGCAAATGGAGCGAAACATTTAGTTGTCTTGTTTAAGCTGATCAGACCAATTCTTACAAATGAAAATACTGTAAAGGGGGAAATGATGATGGTGTGGTTTGTATATTTAgttatttctgttttgttttaatgcCTGCTAATTCAAAGTAGCCTATGTTTAATAAACAAGGGCCATTCTCACAGTAGGTGAGTTAGCTACGTTTGCTGGTGATTGGTTGTGGGCTGACCTAAACCTTTTATGTTTCtagaataataaataatatcacCCAGTTTAGATTAATATAGTATGGGCTCTGACCGTGTCATCCCCAATAAGTAATTGAATAATAACTTCCACGCTGACAGTCGTCTTTCAGATATTATACTCAACACTTTTCTAATACAAGAGCCTGCATAAAGAGTTTATCAGTTGTAACTAACAACTTTAATAGTTAATGTGTTGTAGATCTGTTGTGTGTCACTAATAGGGACAACAGtagggttgccaggttgtgagAAATCCTGCTCTAGTGTTTATCCTTTCTATGTTGTAATAATTATGTTATACATTTTGGTCAATTCACTCATAAATACTCATTGGTTTCTCACTTTTGAATGAGCTGTTAATTCTGTggttatacattttattaaatggATTTTAAACCAAACATTTGTTTCATCATTTCTAGAAAACATCAGGGATTGATTTAAAATGAGTCATGTAAAAATAGTAAAAAGAGCACGTACCTATGTCATGGACTAAGGTCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641929.1 lncRNA upstream 312585 34279146 ~ 34281366 (+) True LOC120574933
XR_005641928.1 lncRNA upstream 312585 34279146 ~ 34281366 (+) False LOC120574933
TU217105 lncRNA upstream 320698 34272119 ~ 34273253 (+) True LOC120574928
XR_005641925.1 lncRNA upstream 320766 34272118 ~ 34273185 (+) False LOC120574928
XR_005641927.1 lncRNA upstream 347198 34244113 ~ 34246753 (+) True LOC120574932
XR_005641933.1 lncRNA downstream 36044 34639825 ~ 34641101 (+) True LOC120574936
TU217198 lncRNA downstream 36405 34640186 ~ 34640634 (+) True G160420
TU217219 lncRNA downstream 43917 34647698 ~ 34649825 (+) False G160424
TU217220 lncRNA downstream 43917 34647698 ~ 34649825 (+) True G160424
TU217200 lncRNA downstream 48654 34652435 ~ 34672741 (+) True G160422
XM_039825439.1 mRNA upstream 43236 34535960 ~ 34550715 (+) True LOC120574921
XM_039825432.1 mRNA upstream 71251 34519324 ~ 34522700 (+) True LOC120574915
XM_039826027.1 mRNA upstream 297529 34290886 ~ 34296422 (+) True LOC120575309
XM_039826025.1 mRNA upstream 375220 34213522 ~ 34218731 (+) True zgc:66474
XM_039825440.1 mRNA upstream 420807 34170327 ~ 34173144 (+) True LOC120574922
XM_039825413.1 mRNA downstream 38727 34642508 ~ 34647627 (+) True jmjd6
XM_039825414.1 mRNA downstream 38727 34642508 ~ 34646714 (+) False jmjd6
XM_039826032.1 mRNA downstream 48772 34652553 ~ 34673832 (+) True si:ch73-366l1.5
XM_039825407.1 mRNA downstream 102298 34706079 ~ 34986840 (+) True LOC120574900
XM_039825416.1 mRNA downstream 186947 34790728 ~ 34819071 (+) True LOC120574909
TU217078 other upstream 410290 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 426305 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 959813 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 974744 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 998572 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217208 other downstream 358319 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 441936 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 633515 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 1022734 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1485839 36089620 ~ 36125552 (+) True G160851

Expression Profile