pdha1a (pdha1,LOC103353336,LOC104965989,LOC102234273)


Basic Information

Item Value
gene id pdha1a
gene name pdha1,LOC103353336,LOC104965989,LOC102234273
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21985611 ~ 21994474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778663.1
TCTGCCGTTATTgaagacagagaagaagaagaagagcgaGCGGAGCCGGAAGGACAGAGCCTAGCAGAAGGACGGAACTGTGAGCTAGCTAAGGATGCTGACCAATATCTCTAATGTGCTGCGGGCTTGTGCTCAGAGAAATGGAGCTGCAGCAGTCGTGTCAGCACGCACATATGCTGACTTCACAACCGAGGCTACCTTTGAAATAAAGAAATGTGACATCCACAAGCTGGACGAGGCCCCGGCTACTCAGGTGGTTATGACTCGTGAGGAGGGCCTGCAGTACTACCGCACCATGCAGACCATAAGGCGTATGGAGCTGAAAGCAGATCAGCTGTATAAGCAGAAGATCATCAGAGGATTCTGCCACTTGTATGACGGCCAGGAGGCCTGTGCAGTTGGAATCGAAGCGGGAATTAATTTGACAGACCACCTGATCACTGCGTACCGTGCCCACGGCTACACTTACACCAGAGGAGGGACTGTGAAGGAGATCATGGCTGAGCTCACCGgCAGAAGAGGAGGTATTGCAAAGGGCAAAGGAGGCTCTATGCACATGTACACTAAACACTTCTATGGAGGAAATGGAATTGTCGGAGCTCAGGTTCCCCTGGGTGCTGGTATTGCTCTGGCCTGCAAGTATCTTGGCAACAACGAGCTGTGTGTCAGTCTCTATGGTGATGGTGCTGCCAATCAGGGTCAGATTTTTGAATCCTACAATATGGCAGCGCTTTGGAAGCTGCCCGCCATCTTCATCTGTGAGAACAACAGGTATGGCATGGGCACGTCAGTGGAGCGAGCTGCAGCCAGCACAGACTACTACAAGAGAGGAGACTTCATTCCTGGTCTCAGGGTGGATGGAATGGATGTTCTGTGTGTTCGGGAAGCAACCAAGTTTGCAGCTGATCACTGCCGATCTGGGAAGGGTCCCATGCTCATGGAGCTTCAAACCTACCGCTATCACGGACACAGTATGAGCGATCCTGGTGTCAGCTACCGCACACGTGAGGAGATCCAGGAGGTCCGCGGTAAGAGTGACCCTATCTCCATGCTGAAGGACCGCATGCTCAGCAACAACATGGCCAGCATAGAGGAGCTCAAGGAGATTGATGTGGCGGTGAGGAAGGAAATTGAAGACGCTGCTCAGTTTGCCACCACAGATCCTGAACCCCCACTGGAAGAATTGTGCAATCACATCTTTTACAACAATCCAGCCCTGGAGGTGCGCGGTACGAACCCGTGGACCAAGCTGAAGTCTGTTAGCTAAAGTATTTTCATCCCCTCTTTTCATCACGTCATCCACCCAATAATATAATACCCGCCCCCCGCCACTCACATATGCGCACACATCATACAATGTACCATAAACTGGTGCCTCGGACCCAGAGCTTGAACCATCAGCAAGTAAATTAATTTCCATGTTGTACAGTTGAACAGCAGGGACAATATTCCCAAAGATGTTCTGAATATAAAACTAACAAAGATTGACAAGATAATAccttaattgtttttattttacagcgAACCTCAAGAAATTACTTAAGCTACTTTAAGGAATATAGGGTTCCCTTAACATTAGGCACTTAGAAGGTTTTGTAAATCTGGCCCCATGTGAATAAAATATTTACTAGATTCTAAATTTGCTTGATTGATGATGTTCTCGGGTTACTTTTGAGGTGTAAGAAAGCAGATGTCCATCCATCGCTGTTCATCTCATGAAGAGAATGATATATCATTCAGTTTtcagttttagtctttttatttttttatttaacctgtTACAAAGAACCATAAGAGGCAGCAGGGTAAAGTCTGTTGTTACTATCAACCTCAATATATAgacaatgtttttcttttaatatacTGTAAGAGAGGGTGAAGAATACCAATGGaaaggtttgaaatattttaatttatctTGCCAAACCAAATGTGCCTGGCAGGTCTCATGTTGTTTAGAGGATGGATGTGTCGTCTCATGTTTGTGTCACTCCGAGCTGAGCAGCTGATGCTGACGCTTCTAAAAGTCAGATGGTTGAAGACGGGTTCACAGTGGGTTAACTTTCATGTGTTTATTTTGCCGATACTCTGGTGCTCAGGTGCCTTCTTCGAGtttcatgacaaaaacataagCCGCTCATTTTCATGTATTTTGGAAaggttttattcaatttttgatgtacatgtgtgtaaatatttacaCTCAAAAATGACCACAAACTGAAACCTCTATTGCGGAAACAACAGTGAATGTAAACATGATGACTTATAGTCAGAGTGCATTCATCAGCTAAACTTCATATTCCCATAAGAGTAAAGTATTGTTGATTCAGTAGCTTTGTGTGCTACTTGTATGTTTTGCTCAGAAGGTGTTTAGTGCTATTTAAACACTTCAGCAGTGGTACATTATTGGCTCAGATGTACAGGGATAAAtggcttttttaaatttcagtctgttttttttcttgtcaagTACATGAACACATTATtgttaaaaaggaaaatgaCTAAACTaggtagcaaaaaaaaaactttcatatCAAGACTGCTAGCAGCGAGCTACCATGTTAGTTTTCAGTCATTGGTATTTCTAACCATTGTAACAAGTGCTTGTAACCCTTAAATGGGTACCAGAAGGGAAGGGCCTTTTCTCTGTAACGTGAAAAGTATTTAGTCAAATAAGAAGACAGACTACAATTTTAATTGTCAATACCTGTCTTAAAACAACCCACACAGTGTGAGTATTTGTTGTAATAAACTGTTACATTGAGGGTGACAGATGATGCAGGGAAGCGCTCCATGGAAacattgtttttatgtgtgtgccaCTGTAATAAAAAGACTAAGATACTGTA

Function

symbol description
pdha1 Enables pyruvate dehydrogenase (acetyl-transferring) activity. Involved in acetyl-CoA biosynthetic process from pyruvate. Located in mitochondrion and nucleolus. Part of pyruvate dehydrogenase complex. Implicated in pyruvate decarboxylase deficiency.

NR:

description
PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG:

id description
K00161 PDHA, pdhA; pyruvate dehydrogenase E1 component alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778663.1 True 2855 mRNA 0.43 11 21985611 21994474

Neighbor

gene id symbol gene type direction distance location
lipia NA coding upstream 33538 21945395 ~ 21952073 (+)
phldb2a LOC103368264 coding upstream 81063 21887771 ~ 21904548 (+)
LOC120543655 ryr1,LOC103368261 coding upstream 163675 21770663 ~ 21821936 (+)
tmem45b tmem45b coding upstream 233989 21746130 ~ 21751622 (+)
gng8 LOC107669366,LOC107567170,LOC107715333 coding upstream 239877 21743197 ~ 21745734 (+)
prdx4 prdx4,LOC107386417,LOC102782956,LOC101470355,LOC108237004 coding downstream 962 21995436 ~ 21998516 (+)
LOC120575707 LOC104965991,LOC104935631,LOC100709878,LOC101470058 coding downstream 6091 22000565 ~ 22001935 (+)
LOC120544110 zfx,LOC101469595,LOC102299651,LOC100691538 coding downstream 8334 22002808 ~ 22015678 (+)
gsx1 gsx1,LOC102779870 coding downstream 89494 22083968 ~ 22085457 (+)
zgc:175280 slc7a1,LOC102202414 coding downstream 133776 22128250 ~ 22133819 (+)
G167559 map7d2 non-coding upstream 3359 21981342 ~ 21982252 (+)
G167557 NA non-coding upstream 8195 21975882 ~ 21977416 (+)
G167549 NA non-coding upstream 47662 21937689 ~ 21937949 (+)
LOC120543580 NA non-coding upstream 51803 21931243 ~ 21933808 (+)
G167544 LOC103353342 non-coding upstream 62197 21921282 ~ 21923414 (+)
G167564 LOC104935632,LOC104965992,LOC103353333 non-coding downstream 21601 22016075 ~ 22017905 (+)
G167569 atp6v1a,LOC106526133,LOC108236878,LOC100710668,LOC101468244 non-coding downstream 35823 22030297 ~ 22031640 (+)
G167649 NA non-coding downstream 221059 22215533 ~ 22216464 (+)
G167651 NA non-coding downstream 223607 22218081 ~ 22227298 (+)
G167670 spag7 non-coding downstream 455396 22449870 ~ 22452122 (+)
sms sms other upstream 137513 21823653 ~ 21848098 (+)
LOC120544341 LOC108236972,LOC106514048,LOC103368261 other upstream 214857 21764201 ~ 21770754 (+)
dnajc18 dnajc18,LOC101477689,LOC100707186,LOC104924601 other upstream 264746 21713943 ~ 21720865 (+)
LOC120544614 LOC103368254,LOC101478346,LOC103475446,LOC100706924,LOC104924602 other upstream 275234 21680133 ~ 21710377 (+)
LOC120544432 NA other upstream 376763 21599083 ~ 21608848 (+)
kif20a kif20a,LOC102778170 other downstream 140033 22134507 ~ 22144199 (+)
LOC120544391 LOC106960928,LOC103141750,LOC106923483,LOC103475842,LOC104941830,LOC102202980,LOC105919900,LOC100693698,LOC101158965,LOC101487699,LOC102291410 other downstream 400042 22394516 ~ 22422054 (+)
zgc:163098 LOC103353302,LOC100691810,LOC102795692 other downstream 626919 22621393 ~ 22645826 (+)
gria3a gria3,LOC103367234,LOC103395443,LOC102795589,LOC101486592 other downstream 1847059 23841533 ~ 23918477 (+)
G168226 thoc2 other downstream 1932868 23927342 ~ 23928481 (+)

Expression


Co-expression Network