LOC120561112 (LOC101472590)


Basic Information

Item Value
gene id LOC120561112
gene name LOC101472590
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42425703 ~ 42435600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804063.1
atggtaaaAACGGGGAAGTTCACTAATGGTCCCGGAAACACCTCCACTCCGGGAACACACCAACGGCCCGGGGAACACACCAACGGTCCGGGAAACACACCAACGGCCCGGGGAACACACCAACGGCCCGGGGAACACATCAACGGCCCGGGGAACAGCGGCCAACACCTGCCGCTTCAGCCCAACctctctgtgtcctcctccATGGTCGGGGTCTCCGAGGAGGACCAGCAGGAGGTGTTCCAGGTGTTCTGGGGCTCCACCTTCACCATCAGCTGCTCCATCCAGCCACAGTACCCAGGAGGCTCCTTCCAGCTCACCTTCACCTCCTCCAACTCAGCACACAACTCCACCCAGCCAGCTGTCAATCACTctgcccacttcctgtttcctgctgcAGAGCCCACCCACCAAGGAAGCTACAGCTGTGTTTATCACCTCTATGTTTTCTCTCATAACTTCTCCTCTGAGAGCCGTGTGCTCTCTCTCAGCGTCATGGATCCGAGGCCTTTAATCATCAGAGCGATCCTCCTGCCGCTGATTCTGCTGGTGGAGAACATTGTCCTTTACTTCTACTGTAGGGCCAGAAGGGGGCAGCTGCCGTGCAGACAGAAGAACATTGAGCCGGATTATTATAACCTGGGTGTCCCTGCAGCTGAAGGAGGGCCGACTGAAGAGGAAGGAGCTCAGGAAGCAGAGTAGCACCTCCAAGGAGCTCATGGAGGTTAAGCATTTATACACCTTTTTACCCCAACTTGGAATTATTCCCATTTATTTACCCTTACAAAACTTCAATTCATTTAGATTGGCACA

Function

NR:

description
scavenger receptor cysteine-rich type 1 protein M130-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804063.1 True 813 mRNA 0.55 4 42425703 42435600

Neighbor

gene id symbol gene type direction distance location
LOC120560201 NA coding upstream 5597 42322474 ~ 42420106 (+)
LOC120560243 NA coding upstream 13727 42374134 ~ 42411976 (+)
LOC120560192 NA coding upstream 184774 42218162 ~ 42240929 (+)
LOC120560233 LOC103473932 coding upstream 266755 42150631 ~ 42158948 (+)
LOC120560236 LOC103396904,LOC100693342,LOC103375480,LOC104933652,LOC104940903 coding upstream 278248 42140583 ~ 42147455 (+)
LOC120560205 NA coding downstream 14681 42450281 ~ 42490262 (+)
ccdc180 NA coding downstream 59685 42495285 ~ 42534878 (+)
LOC120560195 NA coding downstream 114673 42550273 ~ 42643061 (+)
LOC120560229 wdr5,LOC103397940,LOC107686885 coding downstream 209146 42644746 ~ 42655934 (+)
LOC120561123 NA coding downstream 997170 43432770 ~ 43452377 (+)
G68506 NA non-coding upstream 29301 42385954 ~ 42396402 (+)
G68495 NA non-coding upstream 94057 42278980 ~ 42331646 (+)
G68491 NA non-coding upstream 174096 42249911 ~ 42251607 (+)
G68260 NA non-coding upstream 214130 42189494 ~ 42211573 (+)
G68264 NA non-coding upstream 214899 42208679 ~ 42210804 (+)
G68512 NA non-coding downstream 99667 42535267 ~ 42536646 (+)
G68461 NA non-coding downstream 133912 42569512 ~ 42607617 (+)
G68537 NA non-coding downstream 208256 42643856 ~ 42644077 (+)
G68544 NA non-coding downstream 246694 42682294 ~ 42698899 (+)
G68555 NA non-coding downstream 280444 42716044 ~ 42786638 (+)
G68504 NA other upstream 29060 42322473 ~ 42396643 (+)
G68429 NA other upstream 419742 41909824 ~ 42005961 (+)
LOC120561105 NA other upstream 486645 41932563 ~ 41939058 (+)
aebp1b LOC104948491,LOC103367614 other upstream 632792 41720800 ~ 41792911 (+)
G68349 NA other upstream 1020889 41366584 ~ 41404814 (+)
G68598 NA other downstream 528440 42964040 ~ 43023819 (+)
LOC120561116 LOC101485158,LOC102302930,LOC100699693,LOC106633016 other downstream 540546 42976146 ~ 42998383 (+)
entr1 NA other downstream 589665 43025265 ~ 43038474 (+)
G68626 NA other downstream 596667 43032267 ~ 43162404 (+)
G69274 NA other downstream 815087 43250687 ~ 43251323 (+)

Expression


Co-expression Network