LOC120561105


Basic Information

Item Value
gene id LOC120561105
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41932563 ~ 41939058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU91352
caatattaaatatcagacttttaataaataaatatataaaataaacttttaaGACCTGGTGGGAATcgtgaatgaatgaagaaaacGCCAAACATTTTGGGTATttcagattttgttttattaacaaGGCGTCCCTTTGATAGGATCGTATGTTTCTTTAGGTCCTCAATGCCccaaaaacatactgtacacattaTACAAGGGGGACCACGACTCAGGCAACgaaaaactaaacagaaaacatttttaaattataatACAGTCTCgaggaaaaaatataaataagttTTTGTTGTCTTCTCTGGTTGAGCTCCCTCTATGGTACAGACTTAAAATAAATAGATCAGATCTGACCTATGAATCCTCTCTCTACGAGTCCGTGTGTGTAGCAGCATCATCGCAAAACGAGCCAATGGAAACAGAGATCCCCCGTTTCCCTGGAAACCTTTTACAGGTCATCATTTAGTCACATCGTCACACAGCCGCCTCCgtctcagccaatcacagacgcCGATGTTGTAGAAAACAGATCCAGGGGggtttatatatacacacacacacacacacacgcacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacaaacacagacaaagacacacacacacacacgcacacgcacgcacgcacgcacacacacacacacacaatggcagCGTGTAATGGCAAACTACTCTTTTAGATTTTAAACTCTTACAAGCGAGAAACACGTTACGACGTGGCCATGCTGGTTGCACATGCAGCGAGGTGAAGAAGGCGCCGAGAGCAAACGTTTGGTATTAAAATCTGTCCCGAATAACTTAAACTATGGATAACTTCCCAAAAGACCACGCCACATCCTGAGGAGAAACGGTACAGGGTAACTGGGTTCCCCCAAAGCTTTCAACCCTACGGGACAAATATTCAGCATCAGTTatcgctgacagactcagattattactCTGAGTGTCTGACagcattatgggatggatccctacagagatagaccttttagttaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatggagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatggagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcatgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagaggtgattgttggaacagtggaaagatgaaccaagacagcttttggaagttttatttagtttctgtccactttgaatgaagtgtgttttacgatgctaaaagtcctgattatttacatggagtctggtggagtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctctctctgtagggatccatcccataatgttgtcagacacttagaataataatctgagtctgtcagcagcaacaacagaacttttagtggacgctaaactggagattgttgttcccatcagtacCTCAGACACAAAAAACACGGGAAAATAGAGTCCAAAGTTACCCTGTGAAAGATGACATTAAAAATGGTTTTCTCCTCTTGTGTCAGGGCGGCAGATTTAGTGTTTAAGAAAATACAACAGCGGTGATGTCTGATTGTCTTGAGATACAGGAAATAGAAaagtaagtgtgtgtctgtgaggctACAGGttggagagtgagagagtgagagagagagagagagacgaaggAGAAGCAgacagtgcagagagagagacaggtgggGAGATATGAAGCAGGTAAGGTTGTAAAAACAGCGGGACTCTCTGTAGTGTTTAAGTTTGGTACGGAGAAGAGTCCGAGGAATCACTGGGTAGACACGAAGACATGCCTTTGTTCATTTCATCGCGGAGAACTCTCCTCTggaaggagagaaaaggaggtCTTCCTCCCTCGCTGAACACAACGGGAGCCTGTGTGGTAACGGTCCGGCTCAGCGCTTGTGTTATCGAGTCTAAAGAGACAGTATTTGGTTAAACTTCTCCCCCTTTTTCCTgttaacaaaaaactaaaaagtctcAAACAGCGTTAGGTGTGTTGGGTTAGGCTCACAGATCCCCAGGTCCTgggtctgagagagagaggcgagcggcctcctcttcctcggcTGTGGTTGTGCGTTTTTGGGAGCGACAGAAACACGCCGATGCCTCCAGCAGACCTGCGTCTCATCTTCTCTCAGTCGTGTTTTCGGGttaaggagggagggaggggggtggtttttttgggggggggggctgtgcaGGTACACGATCAGGACTCTGTAGGCGGGTCTGCGTCCTCTTCCACAGCTTTCGGGAGCTTCGTCAGGATCGCCTCGGCTTCCTCGTA
>TU91474
CAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCAACGTAAAGCTACCACAAAGCTACTGTAAAGCTACCACAAAGCTAACGTAAAGCTACCACAAAGCTACCGTAAAGCTACCATAAAGCTACCATAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTAACGTAAAGCTACCAAAAGCTACCGTAAAGCTAACGTAAAGCTACCACAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCTACCACAAAGCTACCACAAAGCTAACGTAAAGCTAACGTAAAGCTACCACAAATCacagttttttctctttttcatcaaactaaagtttttgcaagttcccgcaatttcatcacataaaatcgCATAAATATCATacagcatattccatcgcactttttaagaaaacgtggcaGCACAATTAAGGATTTTTGCACAAGAAAAACTACCCTCCTCCCCAGTGCTGCCatttgttgaaagaaaatataggTCCGCGGTTCAAGGCCAGACCTAAACCGAGGTCTCAGAAAATCCACTCAGACTCAGATGTGGAAAGAGAGAGTTTAATGTGCTGCGAAAGGAATTCTGGGAGTTATTTGGGACACTATAGACTGCACGTACACCGAGCAGAACGGTGATGAGTGACTTTGTTCAGTGTGGGGGGCAAGAAACTGTCCCGGTATCTCCCACCAGAGGGCTGGACGTTTGGGACCAGGATGGGACCAGGATGTGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAGGATGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAAGATGGGACCAAGATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGATGTGAGGGGTCTGCAGAGAGTTTGAGTCCCACCAATGTCATGCATGTAAAACAGCAGCAGTCCCTTTGTCCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTACTGGTGTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTTCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGTCCTACTGGTGTCCTGCTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTACTGGTGTTCTACTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTTCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGTTCTGCTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGCCCTACTGGTGTCCTGCTGGTGTTCTACTG
>TU91478
CAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCAACGTAAAGCTACCACAAAGCTACTGTAAAGCTACCACAAAGCTAACGTAAAGCTACCACAAAGCTACCGTAAAGCTACCATAAAGCTACCATAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTACCATAAAGCTACCACAAAGCTAACGTAAAGCTACCAAAAGCTACCGTAAAGCGTGGCTACCACAAGCTACCACAGAAAGCACCGTAAGCTACGCAAAGCTACCACAAAGCTACCACAAAGCTAACGTAAAGCTACCACAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCTACCACAAAGCTACCACAAAGCTAACGTAAAGCTAACGTAAAGCTACCACAAATCacagttttttctctttttcatcaaactaaagtttttgcaagttcccgcaatttcatcacataaaatcgCATAAATATCATacagcatattccatcgcactttttaagaaaacgtggcaGCACAATTAAGGATTTTTGCACAAGAAAAACTACCCTCCTCCCCAGTGCTGCCatttgttgaaagaaaatataggTCCGCGGTTCAAGGCCAGACCTAAACCGAGGTCTCAGAAAATCCACTCAGACTCAGATGTGGAAAGAGAGAGTTTAATGTGCTGCGAAAGGAATTCTGGGAGTTATTTGGGACACTATAGACTGCACGTACACCGAGCAGAACGGTGATGAGTGACTTTGTTCAGTGTGGGGGGCAAGAAACTGTCCCGGTATCTCCCACCAGAGGGCTGGACGTTTGGGACCAGGATGGGACCAGGATGTGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAGGATGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAAGATGGGACCAAGATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGATGTGAGGGGTCTGCAGAGAGTTTGAGTCCCACCAATGTCATGCATGTAAAACAGCAGCAGTCCCTTTGTCCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTACTGGTGTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTTCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGTTCTGCTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGCCCTACTGGTGTCCTGCTGGTGTTCTACTG
>XM_039804058.1
GCACCGTAAGCTACGCAAAGCTACCACAAAGCTACCACAAAGCTAACGTAAAGCTACCACAAAGCTACCACAAAGCTACCGTAAAGCTACCACAAAGCTACCACAAAGCTACCACAAAGCTAACGTAAAGCTAACGTAAAGCTACCACAAATCacagttttttctctttttcatcaaactaaagtttttgcaagttcccgcaatttcatcacataaaatcgCATAAATATCATacagcatattccatcgcactttttaagaaaacgtggcaGCACAATTAAGGATTTTTGCACAAGAAAAACTACCCTCCTCCCCAGTGCTGCCatttgttgaaagaaaatataggTCCGCGGTTCAAGGCCAGACCTAAACCGAGGTCTCAGAAAATCCACTCAGACTCAGATGTGGAAAGAGAGAGTTTAATGTGCTGCGAAAGGAATTCTGGGAGTTATTTGGGACACTATAGACTGCACGTACACCGAGCAGAACGGTGATGAGTGACTTTGTTCAGTGTGGGGGGCAAGAAACTGTCCCGGTATCTCCCACCAGAGGGCTGGACGTTTGGGACCAGGATGGGACCAGGATGTGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAAGATGGGACCAGGATGGGACCAGGATGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGACGGGACAAGAATGGGACCAGGATGGGACCAGGATGTGAGGGGTCTGCAGAGAGTTTGAGTCCCACCAATGTCATGCATGTAAAACAGCAGCAGTCCCTTTGTCCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTACTGGTGTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTTCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGTCCTACTGGTGTCCTGCTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTACTGGTGTTCTACTGGTGTTCTACTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTCCTGCTGGTGTTCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGTTCTGCTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTACTGGTGTCCTACTGGTGTTCTACTGGTGTCCTACTGGTGTCCTGCTGGTGCCCTACTGGTGTCCTGCTGGTGTTCTACTGCGCCgctatgtGGCGGCAGATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91352 True 2860 lncRNA 0.44 2 41935447 41939058
TU91474 False 1685 TUCP 0.50 2 41932563 41934316
TU91478 False 1578 TUCP 0.49 3 41932563 41934316
XM_039804058.1 False 1386 mRNA 0.51 3 41932857 41938290

Neighbor

gene id symbol gene type direction distance location
npc1l1 npc1l1 coding upstream 367 41889339 ~ 41932196 (+)
LOC120560218 NA coding upstream 221357 41707504 ~ 41711206 (+)
LOC120560215 NA coding upstream 230063 41699362 ~ 41702500 (+)
LOC120560214 NA coding upstream 277913 41641330 ~ 41654650 (+)
LOC120560213 NA coding upstream 296674 41630736 ~ 41635889 (+)
LOC120561109 NA coding downstream 114363 42053421 ~ 42070713 (+)
LOC120560236 LOC103396904,LOC100693342,LOC103375480,LOC104933652,LOC104940903 coding downstream 201525 42140583 ~ 42147455 (+)
LOC120560233 LOC103473932 coding downstream 211573 42150631 ~ 42158948 (+)
LOC120560192 NA coding downstream 279104 42218162 ~ 42240929 (+)
LOC120560201 NA coding downstream 383416 42322474 ~ 42420106 (+)
G68369 NA non-coding upstream 3422 41928654 ~ 41929141 (+)
G68366 NA non-coding upstream 4644 41863775 ~ 41927919 (+)
G68425 NA non-coding upstream 15903 41892909 ~ 41916660 (+)
G68427 NA non-coding upstream 28973 41902901 ~ 41903590 (+)
G68426 NA non-coding upstream 34134 41897926 ~ 41898429 (+)
G68433 NA non-coding downstream 4638 41943696 ~ 42008298 (+)
G68364 NA non-coding downstream 15646 41954704 ~ 41993490 (+)
G68362 NA non-coding downstream 28542 41967600 ~ 41976031 (+)
LOC120560257 NA non-coding downstream 39055 41978113 ~ 41987057 (+)
G68367 NA non-coding downstream 48764 41987822 ~ 41993703 (+)
aebp1b LOC104948491,LOC103367614 other upstream 139652 41720800 ~ 41792911 (+)
G68349 NA other upstream 527749 41366584 ~ 41404814 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other upstream 661714 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other upstream 665044 41266647 ~ 41267519 (+)
LOC120561096 NA other upstream 834767 41081607 ~ 41097796 (+)
G68504 NA other downstream 383415 42322473 ~ 42396643 (+)
G68598 NA other downstream 1024982 42964040 ~ 43023819 (+)
LOC120561116 LOC101485158,LOC102302930,LOC100699693,LOC106633016 other downstream 1037088 42976146 ~ 42998383 (+)
entr1 NA other downstream 1086207 43025265 ~ 43038474 (+)
G68626 NA other downstream 1093209 43032267 ~ 43162404 (+)

Expression


Co-expression Network