LOC120561109


Basic Information

Item Value
gene id LOC120561109
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42053421 ~ 42070713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804061.1
TTTATGTGTTAATATAACGGTCACATCTTCCAGGACGAACAAACAGGACGATGGCAGGTCAGATGAAGAGCTGGAGGACTCTGAGGCTCCTGATCCTCTTCAGCCTCCTCATCCTCACTCAACAGTTTGaGGTGAGAGATGAAGAGTGGGAGGAGCTCGGCCCAGATATCGCTGCACTACACCACCTCAGAGGACTGTCTGAACACATGTTTCACGAAAGGCTCAAGAACCCATCGAACCACAGGGGCACATCCATAAATGGGGCCAGAGTTGAGAGATCTCTTAGCAGGGAGGACATTGACCAAAACCCGATGAGTTTGCTGTCTGATCTTCAGGAGAATGAGAAATTCACAGCTTCTGTTATTCAGAAGGAACAGGATTTTGAAGGATTCTTGGCAGCGATTGATGAACAGAAGACACAAGATGTTCTCCTGAGTGCTTCAGAGATCTCACACAGCTACAGCCAAAAACTTCTGGTCATGACTGACAAAGAAAAGTCAACAAATGACAGAGTCCAACAGGAATACAGCATGGATCCCCGTTACTCAGTAATAGTCAGCAATGAATGCCTGTTCAATGTCTCGTGTGTACCAGAAGCAGACAGCTACACCTTGGTGAAAATATTTGGGAGTGTTTCAGAAGATGGACAAACTGTGTCTGGCCTTTCTGGCTCTTCACTCGCAGAGCTGATGTTGAAACCATCACTGGAAACTGCACCTGTGTTCTCTCTCGATGGAAACACAACCAAAGACTTCCAACATAACTTCATTCGAGTTTTTACGGCCCGTGGCATCCCAGCAGTCCTAGAAACAAACCAGGAGAATCACCAGACTTACCAGGTCATGAACCAACTTGAAGAAGTTACTGGATACCAAATTCCGCAAAGACCGGTTGATCACAGCACCCAGTACGACCACCAGCAGATCCTCATCCTGGAAGATAACCCTGCTGTCAGAACAGCTGCTACGTATCTTTTTGAGAAGCATCCAAAGGTTTCCTCTGTCTACGTTCTTGATAACAACCAAAGACCAGTACTGATCCGAGGTGACTCCGTGCCTCTGACAGAGGAGAGCCGGCTGGTGCTGGTCGGCCACGGCAGGAAAGACAACTCGGGAGAAATGAGACTTGGAGGATATGAAGTGCAAGAAGTCTCCAAAATCATTCAACAAACCTCCAGGGATTccaataaaattaaaacaataagtGTGGTGGCCTGTGACGTCGGATCAGATAATGCATTCATTGAAACGCTGCTGAAGGATCTCCATGAGACCGCCGGCATCGAGACAGAGCTGCACCTCAGAGACGCTGTGCTCCAGGTCagccacacaggagagaaaatcACCCTGGAGATCACTAAGGATGGAGAGCAATGGAGACATAAAGATGACAGCAAGAAAGTGGTCGCAACCCTCGATAGGAACGGAGATGTAATTATTAGAAATGAGCCCGGCAGTAAAGGAAAGGAAATCTTTACCACTGAAAGAAACTTTCTAGGTCCAGAAAACCGTTTTCTGGTCTACAGAGACAGCTGGCCAGTTGTGCCAAGGAGATTTATTAACAAGAATGTTTTGGGGAAGTTTACGGATGCTGACAAAGTACGTATTGCTTGTAATCAACTTGAAGCTATGTCCTGGGGATTCtttcacaacaaaaacatgCCCCGTCCAGAAAAAATGAAGATTAAAAACTTTGATCTAAAAGAATATTATTTAccaaaaaaaatttacaataaaGAAAGGGAGTTACAGAAGATAACGAATGAACAAGAACTAAATCGTATTCTTTCCAACTGTTATGAGATTAAATCAGGAGAAGATATCAGGAATGTAATCCGTCACTATGCAAAGACCGGAGAAGATGAGGTTACATACCTGAAGGTCAATGACTGGATATTAGAGGTTAATCCTATAAATCTGTATATAACTCCAGTTGGAAAAAAGCTTGACAACAATGGAAGAGAAAATGAGCAAAACGTTAAGAAATGTATTGAAGATCAGATAGGAAAAGAGAAATACCCTGACATACGAAAAGGAATTATAAAAGAAATGGGCCAAAATGACCCTAAAGAAGGATACGCTCAATATGTGGAAAGTATTTTTCGTGGAGAGCCCACAACACCTCGCCTGCCGCTCTCCGCAGGGGCCTGGTACACCACATATTTCTCTGCATCGGTTATATCTGAATCTGCTAGAAACTTCCGGACATTTCCTCTAATTCTCATGGCCCTGGATATGGTCAAAAGCACAGACAACAATATCAAAGAGAAAGGACTGAAGTTTCTTTGGGAAGAACATTCAATGGCAAGAGGACATAACAAGGCCGACTgcctggacagagaccagttcACCAAGTGTATTAAAAGTAGCAGCATCGACTACAGCAGCTCATCATGTCCTCTGCTGGTGGACCTTCAGGAGGACGAGGCTTTTAGCAGCGTGACGGAAGTTCGTGGGTCAAAGTTCAACGATGACATCAGAGGGAACAAAGAACACAATGTTATTGTCCCAGGAAGAGGACATGATTTCATCCAgggtagaggaggagaggactGGTACGTTATCACACCGGGCCAAGGAGTCAAAACCATCAACAACCAATCTCCAGATCTAGCCTTGGATATTCTCTTTCTGAAAGAAGAATACGAGAACATAATGTGTTCTTGTGAAGGGCAGAGCATCATCATTTTGGTACACGGTAGAATAGATGTTATTTTACAGAACTGGTTTGATTCAAAGTTTCATCAGCACCTGCAGATTAAAACCAGTGATGGAATAACATCTGGATTGATGACCAACCGCAGCAGCTGTGATGAGTCTTTAATGTTCCCCGTAACTGTTGATTTTAGAAACCAGACACCCTCTGAATACAAGTGCTTCATACATAACAGAAACAATTCGCAAATCTTCTGCAGCCTTCAAGGCAAAAGAAAGATGAATGGCAAAGTGATGAATATGAAGAATCGTGATTCAGTTAAAGAAATGTACGGTTCCTCAGGTTTCGACATCATGGTTGGGAACAGCAATGAGAATCTGCTTGATCCGTACACCGGAGGTGCACTGATGATTGGAGGTGAAGGAAAAGACACTTACATAATCAAACAAGGATATGGAAACAACTCAATGATTGCTAACTTTGCAGAAGATCAGAGTATTGATACTGTGTCGGTTGACATGGATTATCTTCATGGCAGTCAAGTCACACTGGACTCATCAACAGAAGATCTAGAAGTGACCATCACATCAAAAGGGGAACAACTAAAATTCATTCTGCTCAACTACGCCAAAAGTTCCAAACATCAGCACTTAGAATTTCAGAGCTCTGACGGAGtgaattttaaattgaaatcacTAAACTCAACCGGAGATGTCCCTTTCATTTACATTGAAGCTTTCAAAGTGACTCTGAAACAGCTGCAGGTTGACTGCCGCTTGGACCTCAACTCTCAGAGGAATCTGTCAAAGGTCCAAACGGTGCAAGGCTGTCCCTCCCAGTCCAATGACATACTAGGTAACGATCAAGacaacgctctgattggtgggTGGAAGGATGACGCCTTGGAAGGAGGCGCCGGAGATGACACGCTGATCGGAGGGAACGGAGACGACCTCCTGATTGGTGGCTTGGGAGACGACACTCTTTATGGCGAGGACGGAAATGACACTATGATGGGAAACTCTGGCCGGGACGTCTTCCTTCCTGGACCAGGGGCCGATCTGGTGGACGGGGGTCCTGGCAGAGACACGGTTGTGTACCGGGGCGATCCTGACACAGGTAAAGGAGTTTATGTCAACCTGCTGACGGGACAAGGCCGCTACGCCGATGCTGAGGGCGACGTGTTGAAGGATGTGGAGATAGTCATCGGCACCATCTACTCTGATATCTTGGTGTCCGGTTACGAAAGTTCTCTCCTCAAAGGCTCGGACGGCAATGACATCTTGGTGTCCACCGGTGGTGATTACCTGGTCGGTGGTGATGGAAATGACATTTACATGTTGGCTTTCAACAACGGTTCAGTCACGGTTGATAACTGTGCCAAAGACAACGCTACAGACGTCTTGTACATAAGCTCACAGTTAACGCTGCCATTTGACTGCCAACTTTTGTCTGACAGAGTTCTCCTGACTTCATTTGGACTTAAGCAAACTACTATTAAAATTACACTGCAAGGCTGGATCAGCGATGAGAATGAATGTGGTCATTTGAAGTTGGGTTTTAGAGATCAGGAGGTGTCGGTGGACCGGCTGCTGCAAGAGTGTCAGTTAAGACAGAAGTAGTTATCCGGATCATTC

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804061.1 True 4292 mRNA 0.45 8 42053421 42070713

Neighbor

gene id symbol gene type direction distance location
npc1l1 npc1l1 coding upstream 121225 41889339 ~ 41932196 (+)
LOC120560218 NA coding upstream 342215 41707504 ~ 41711206 (+)
LOC120560215 NA coding upstream 350921 41699362 ~ 41702500 (+)
LOC120560214 NA coding upstream 398771 41641330 ~ 41654650 (+)
LOC120560213 NA coding upstream 417532 41630736 ~ 41635889 (+)
LOC120560236 LOC103396904,LOC100693342,LOC103375480,LOC104933652,LOC104940903 coding downstream 69870 42140583 ~ 42147455 (+)
LOC120560233 LOC103473932 coding downstream 79918 42150631 ~ 42158948 (+)
LOC120560192 NA coding downstream 147449 42218162 ~ 42240929 (+)
LOC120560201 NA coding downstream 251761 42322474 ~ 42420106 (+)
LOC120560243 NA coding downstream 303421 42374134 ~ 42411976 (+)
G68447 NA non-coding upstream 9543 42024253 ~ 42043878 (+)
G68449 NA non-coding upstream 13956 42039068 ~ 42039465 (+)
G68433 NA non-coding upstream 45123 41943696 ~ 42008298 (+)
G68441 NA non-coding upstream 55176 41995671 ~ 41998245 (+)
G68367 NA non-coding upstream 59718 41987822 ~ 41993703 (+)
G68463 NA non-coding downstream 19328 42090041 ~ 42090526 (+)
G68472 NA non-coding downstream 36996 42107709 ~ 42112264 (+)
G68473 NA non-coding downstream 42178 42112891 ~ 42113884 (+)
G68475 NA non-coding downstream 44600 42115313 ~ 42117121 (+)
G68479 NA non-coding downstream 51056 42121769 ~ 42129069 (+)
G68429 NA other upstream 47460 41909824 ~ 42005961 (+)
LOC120561105 NA other upstream 114363 41932563 ~ 41939058 (+)
aebp1b LOC104948491,LOC103367614 other upstream 260510 41720800 ~ 41792911 (+)
G68349 NA other upstream 648607 41366584 ~ 41404814 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other upstream 782572 41135777 ~ 41270849 (+)
G68504 NA other downstream 251760 42322473 ~ 42396643 (+)
G68598 NA other downstream 893327 42964040 ~ 43023819 (+)
LOC120561116 LOC101485158,LOC102302930,LOC100699693,LOC106633016 other downstream 905433 42976146 ~ 42998383 (+)
entr1 NA other downstream 954552 43025265 ~ 43038474 (+)
G68626 NA other downstream 961554 43032267 ~ 43162404 (+)

Expression


Co-expression Network