npc1l1 (npc1l1)


Basic Information

Item Value
gene id npc1l1
gene name npc1l1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41889339 ~ 41932196 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802450.1
TGTCAGACAGCAAACAGGAGAGGCTGTCTGCCTTTACTGTCTCTTATGTATATCTTCCAACAGGACAGCAGTGattcatattaatattaatttacaCTCCTACATTACAAACTGTGCCTGAGGATTATTCAGTGGCTGAAACACTCTCAGGAATCATGGTCCGTGTTGCAGCGCTGATCACTTTTCTGACTTGTGTGCTGCTGTCGGAGGCCCAACATGAGCCGGGCTTCTGCTCTTTCTACGAGGAGTGTGGAATGAACCCTTCAGCCGGAGGCACACTCATCGCCCCCATCGTTCCATGTCTGAACTACAGCCCTGCCCGAGCCCTCGTAGGAGAGCACTACAGGCAACTCAAAAAGGTTTGTCCCATTTTGGACCGCGGGGAGGGCGAAACGTTCGCCTGCTGCTCCATCCAACAGCTGTCATCCTTGTCAAAGAGTCTGGCCCTGTCCAAGGCGGTGCTGGTCCGCTGCCCGTCCTGTGCCGAGAACTTTGCCCACGTGCATTGCATCAACACCTGCAGCCCCAACCAGAGCCAGACCGTCAAAGTCACCAAAGTCGCCAACATCACGAACCCGCTGACCAACGTGACGAGGGAGGCCGTGGTAGCCTACCAGGCGTTCATGACTGCTTCCTTCGCCGACACCGCGTTCCAGTCCTGCAGGAACGTCCGGATCCCCGCCACAGGCGGCTTCGCCATCGCCACCATGTGTGGCCGATATGGCGCCAAGCTGTGCACGCCGCAGCACTGGTACGACTTCCAGGGCGACTCCAGCAACGGCCTGGCGCCGCTGGACATCGACTTCCAGCTGGTGAAAGACGGAGACACTCAGGGACTACCGCCGGGCGTGATTCCCTACAACGGGCGCGCTCTGAGGTGTAACGAAACCACGCCATCTGGCGGCGAGGTTTGCTCGTGCCAGGACTGCCAGGAGTCGTGTCCGAAGATGCCGCCTCCGGAGATGCCACCTGGCCCGTTCAGAATTTTAGGAATGGACGGTTTCCTCTTTATTTCCATAATCTTACTGTGCGTTCTGATGTGTAGCTTCCTTCTCTACCTCGTCGTGTCGTGCTTTTCGAGGTCTCAGAAAAGAAAGGATGAAGAGAAAGGGAAGAGAAAGGGGAAAGGCAAAGACCAGAACAGCAACGATGTGACTCAAAGGATCATCGACCCGTCCGAGGTGACCTGCGCCGAGAGGAACAGCATGGCGGCTCAAGCTTTCCTGAGTTTAGAGTTTCGCCACTGGGGAACCCTCATGGCCTCGTATCCACTCACGGTTCTGCTGGTGTCGGCGGTAGTCGTAGCTGTTTTCTCCGCTGGCCTGAAGTCCATCGAACTGACCACTGACCCGGTGGATCTTTGGTCGGCGGCCAACAGCCGCGCTCGCCAGGAGAAAGACTTCCACGACTCGCACTTCGGCCCGTTCTTCAGGACCAATCAGGTGATCCTGACGGCGCCGGGCAGAAAGGGCCACGTTTACGACTCTCTGCTGTTCGGAAAGCAGAACTTCAGCGGGCTCGTATCCAAAGATCTCATCATCGAGCTGCTGGAGCTGCAGACACGAATCCGGGACATTGAGTTCTGGTCTGAGGATCTGAACAGAACAGTGAGTCTGAAGGATGTGTGTTTTGCGCCGCTGAACCCGTCCAACCCCTCAGTGACGGACTGTGCAGTCAACAGCTTGCCGCAGTACTTCCAGAACAGCCTGTACAACATCAACGACAAGAAGAACGTGACGCAGCTGGGAGTGACTGCAGAGGTGGACTGGAGGGACCATTTAATCTACTGCCTCAACTCTCCCCTGTCCTTCAAAGACATCACCGGTTTAGACATGAGCTGCATGGCTGATTACGGAGCTCCCGTCTTCCCCTTTCTGGCTGTAGGAGGCTACGAGAATGACGACTTCACCAATGCCGAGGCTTTCATCCTGACCTTCTCGCTCAACAACTTTGCTCGCAACAACCCAAAGTTCAAAATGGCCATGCAGTGGGAGACGGAGTTTCTTAAAATTGTCCAGGACTACAAGAAGAACGCCAACTTCACCTTTGCGTACATGGCAGAGAGATCTCTGGAGGATGAGATTAATCGGACAACAGCAGAAGACATCCCTATCTTCATGATCAGCTATGCTGTCATCTTTGTTTACATCGCGGTGGCGCTGGGGGAGTACTCTTCCTGGAAACGCATACTGGTGGACTCTAAGTTTCTGGTGGGTCTGGGCGGGATTCTGGTGGTGGGCTGTTCTGTTCTGGCCTCCATGGGTTTCTACTCCTGGATCGGCATCCCGTCCTCGCTGGTTATTCTGCAGGTCGTGCCTTTCCTGGTGCTCGCCGTCGGAGCCGACAACATCTTCATCTTCGTTCTGGAGTACCAGAGAGACGTGCGGAGGCccggagagaagagagaggaacacATTGGTCGTGTACTTGGAAACGTAGCTCCCAGCATGCTCCTGTGCAGTCTCTCCGAGTCCATCTGCTTCTTTCTAGGCGCCCTGTCCACCATGCCAGCAGTGCGCTCCTTTGCTCTGTACGCTGCTCTGGCCGTGCTCATGGACTTCATCCTCCAGATGACAGCCTTTGTGGCGCTGCTGTCGCTGGACGCCCGTCGCCAAGACAACAACCGCTGTGAGCTGGCGTGCTGCGTCACCGTGTCGACCCCGCGGTCCAACGAACCAAACGAGGGCTTCCTGCTGCCCTTCATGAGAAAATACTACGCCCCAGTTCTGCTGCACAGCTACACCAGGATCATAGTGATGGTGGTCTTCATCTTCATGCTGTGTGGATCTGTGTTCCTGATGTTTAACGTGACCGTGGGTCTGGATCAGGAGCTGGCTATGCCTCAGGGCTCCTACATGTTGGACTATTTCCACTATCTCTACAAGTACTTTGAAGTGGGAGTCCCTGTTTATTTTGTGACTAAAAGAGGCTTCAACTTCACCACCGTGGAAGGCATGAACGCAGTCTGCTCCAGCACGGGCTGCGATCAGTTCTCACTAACCCAGAAGATCCAGTACGCCACCAACCACCCTGAACTATCCTACTTGGCTATTCCTGCTAACTCCTGGGTGGACGATTTCATCGACTGGCTGAACCCCGGATCCAGATGTTGTCGTCTCTACACCACCCTCGATTCAAATAACGGAAAGTTTTGTCCTGCGAGCGAACCTGACTTCCGATGTTTCCGAAAGTGTATGCCGTTTCCTTCAGACGGCGTCCTCAGGCCAAGTACGGAAAAATTCAACCACTTCCTCCCTGACTTCCTGGGGAACAGGCCGGACCTGCAGTGCCCCAAAGGCGGTCTCGGCGCCTACGACACAGCTGTCGTACGAGATGAGAGCGGAGAAATTATAGCGTCTCGCTTCATGGCGTACCACACGCCTCTCACCAACTCTCAGGAGTTCACGGCCGCGCTGCTGAAGGCCAGAGAGCTCGCACTCAACATCACCAAGACCATGAGGAGTATATCCGGCACCTCGCCGGACTTCGAAGTCTTCCCTTACACgaTAACGAATGTGTTTTACGAGCAGTACCTGACCATCGTGCCGGAGGGCCTCTTCAACATCTCCCTGTGTCTGCTGCCGACCTTCGTGGTGTGCTGCCTGCTGCTGGGTCTGGACCTGCGGTCCGGTCTGCTCAACCTGCTCACCATCATCATGATCATCGTGGACACCGTGGGCGTCATGACGCTGTGGGGCATCCACTACAACGCCGTGGCGCTCATCAACCTGGTCACGGCCGTGGGGATCTCGGTGGAGTTCGTGTCCCACATGACGAGGTCTTTTGCACTCAGCACTAAACCCACCCACGTAGAGAGAGCCAAGGAGGCCACGGCCAACATGGGCAGCGCGGTGTTTGCCGGCGTGGCGATGACCAACCTGCCGGGCATCCTGGTTCTGGCGTTTGCCAAAGCCCAGCTGATCCAGATCTTCTTCTTCCGGCTGAACCTGGTCATCACGCTGCTGGGTCTGGCTCACGGTCTGGTCTTCCTCCCGGTGCTGCTCAGCTACTTCggtCCCGGTGTGAACAAGGCcgtgctgctgcagcagcaacagGACAAGGCCAAGGCCTCCAAAGACCTGCAGCTGAGGAACCAGATCAGACACGCGTACGATAACCTGAGCTACGAAGAGGACGCCATGGGACAGGACAGCAGCGAGTCCAAGACGCCGCCGACGGACGCCAGCACACGCTCGCACGTTACGGAGAAACCAGACGGCGAGACGGAGGAGACGATCGACCGATTCTGAGCAtcgacatatatatatatatatatatatacctccgAACAAACTGAATGGAAAGCTCCGGACGCACATCACTAACTTAACTTTGGACCTAGAAACCCTTCTACAGAAACCAGGCGCGCTGCATTTATTtatgctttgtgtgtttttacgaGATGTGAAAACTTATTAGACTGTTTTAGCGTCACAAAGACGCACTTCACCGCCCGCCCGAtctcacaaaatacacacaacacaccaaagGGCTTTTTATATTCTGCAAAATattgttaattttattttctatgaATTGTTTGACttaacttaaaggtgctgtaggtaggatggtgaagatccaggacattgacaacttctcagtccctcctccctttctgctaaagcccaaaacggtctcctaagctcctccccccacaagggagaatgaatgcgtgtgcatgagcagttagacaccccctctggccctgattggtgaaTCTGAACAGTTAAGACAactcccctggccctgattggtgcatctgaacagttagacacccctgCCTGGCCctaattggtgcatctgaacagttagacacctctacctggccctgattggtgcatctgaacagttagacacacccctctggccctgattggtgcatctgaacagttagacccTCCCCTCTGGCCcagattggtgcatctgaacagttagacccTCCCCTTGGCcgtgattggtgcatctgaataGTTAGACCCTCCCCTCTGGCCCAGATTG

Function

symbol description
npc1l1 Is expressed in liver. Orthologous to human NPC1L1 (NPC1 like intracellular cholesterol transporter 1).

NR:

description
Niemann-Pick C1-like protein 1

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802450.1 True 5001 mRNA 0.55 21 41889339 41932196

Neighbor

gene id symbol gene type direction distance location
LOC120560218 NA coding upstream 178133 41707504 ~ 41711206 (+)
LOC120560215 NA coding upstream 186839 41699362 ~ 41702500 (+)
LOC120560214 NA coding upstream 234689 41641330 ~ 41654650 (+)
LOC120560213 NA coding upstream 253450 41630736 ~ 41635889 (+)
LOC120560217 NA coding upstream 269687 41609932 ~ 41619652 (+)
LOC120561109 NA coding downstream 121225 42053421 ~ 42070713 (+)
LOC120560236 LOC103396904,LOC100693342,LOC103375480,LOC104933652,LOC104940903 coding downstream 208387 42140583 ~ 42147455 (+)
LOC120560233 LOC103473932 coding downstream 218435 42150631 ~ 42158948 (+)
LOC120560192 NA coding downstream 285966 42218162 ~ 42240929 (+)
LOC120560201 NA coding downstream 390278 42322474 ~ 42420106 (+)
G68359 NA non-coding upstream 40771 41735500 ~ 41848568 (+)
G68411 NA non-coding upstream 84262 41767117 ~ 41805077 (+)
G68410 NA non-coding upstream 133727 41754258 ~ 41755612 (+)
G68409 NA non-coding upstream 144847 41743426 ~ 41744492 (+)
G68387 NA non-coding upstream 244148 41564760 ~ 41645191 (+)
G68433 NA non-coding downstream 11500 41943696 ~ 42008298 (+)
G68364 NA non-coding downstream 22508 41954704 ~ 41993490 (+)
G68362 NA non-coding downstream 35404 41967600 ~ 41976031 (+)
LOC120560257 NA non-coding downstream 45917 41978113 ~ 41987057 (+)
G68367 NA non-coding downstream 55626 41987822 ~ 41993703 (+)
aebp1b LOC104948491,LOC103367614 other upstream 96428 41720800 ~ 41792911 (+)
G68349 NA other upstream 484525 41366584 ~ 41404814 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other upstream 618490 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other upstream 621820 41266647 ~ 41267519 (+)
LOC120561096 NA other upstream 791543 41081607 ~ 41097796 (+)
LOC120561105 NA other downstream 367 41932563 ~ 41939058 (+)
G68504 NA other downstream 390277 42322473 ~ 42396643 (+)
G68598 NA other downstream 1031844 42964040 ~ 43023819 (+)
LOC120561116 LOC101485158,LOC102302930,LOC100699693,LOC106633016 other downstream 1043950 42976146 ~ 42998383 (+)
entr1 NA other downstream 1093069 43025265 ~ 43038474 (+)

Expression


Co-expression Network