G68359


Basic Information

Item Value
gene id G68359
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41735500 ~ 41848568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU91335
acacacagacagacacacacacacacacacagacagacacacacacacacacacagaggcagacagacacacacacacacaggcagacacacacacacacagaggcagacacacacacacacacacacaggcagactcacacaaacacacacacacagaggcagacagacagacacacacacacagaggcagacagacagacacacacacacagaggcagacagacacacacacagaggcagacagacacacacacacacagaggcagacagacacacacacacagaggcagacagacacacacacacagaggcagacagacacgcacagagagacagacagacacacgcacacacacagacacagaggcagACATTAACATCAGCTTCGTCTTTAAGAGAAACTGAGTcagacatttttcactattttctgacattttatagatggAACGATGAAAACAGTCGTACTTATACTCTATAATAtagtataagtatatatatgtataagtgTGTATATACACACTTATACTCTGGTAAGTAGAGCAGCAAAGAGTTAGTCGATCGACAGAGAAATAACAGCCAATTATTTGAAAACttgattaatcgttcagcctaaaaaataaatcagaaaatgttGTTTTCATCCTCTGcttcttttctgttttgtgtcaTATTAAACTGATTATTGATTTTAGTTTCTAGACAGAAGAAGACATTTGAACAAAGACATCATCTTGAGAAACCACTTTGAGAAACTGAAAAGACAATTTCTTTTGGCGTTTTCCGACTTTTTGGTTAATACTTGATACAGGAAACGAGCGTTAGTTGCAGCTTTATAACTATTATTTGTACCTGTTTTAGTACTAATGTCCTAAAAAATGTCCTAACTTTAAACAAGCCatgtgttttacttttatttttca
>TU91342
acacacacagacacacacacacacacacagaggcagacagacacacacacacacaggcagacacacacacacacacacacagaggcagacagacacacacacacacaggcagacacacacacacacacacagaggcagacagacacacacacacacacacaggcagactcacacaaacacacacacacagaggcagacagacagacacacacacacagaggcagacagacagacacacacacacagaggcagacagacacacacacagaggcagacagacacacacacacacagaggcagacagacacacacacacagaggcagacagacacacacacacagaggcagacagacacgcacagagagacagacagacacacgcacacacacagacacagaggcagACATTAACATCAGCTTCGTCTTTAAGAGAAACTGAGTcagacatttttcactattttctgacattttatagatggAACGATGAAAACAGTCGTACTTATACTCTATAATAtagtataagtatatatatgtataagtgTGTATATACACACTTATACTCTGGTAAGTAGAGCAGCAAAGAGTTAGTCGATCGACAGAGAAATAACAGCCAATTATTTGAAAACttgattaatcgttcagcctaaaaaataaatcagaaaatgttGTTTTCATCCTCTGcttcttttctgttttgtgtcaTATTAAACTGATTATTGATTTTAGTTTCTAGACAGAAGAAGACATTTGAACAAAGACATCATCTTGAGAAACCACTTTGAGAAACTGAAAAGACAATTTCTTTTGGCGTTTTCCGACTTTTTGGTTAATACTTGATACAGGAAACGAGCGTTAGTTGCAGCTTTATAACTATTATTTGTACCTGTTTTAGTACTAATGTCCTAAAAAATGTCCTAACTTTAAACAAGCCatgtgttttacttttatttttca
>TU91345
CCTTTTCTAAAAGCTGGTTGAaggactgaaagagagacgctCCACCGTCCTCCACCGCTGGAACACGctggaaaaatataaaaatattaagagGAATATTCACACATTAGCCGAGTCGACAGCTTAGAGGAAGATGGGgtttttcagaataaaacagGAACatgatgtgcatgtaaacgtagtcgctgccatgttgttctTCCGTGTAAATATACGAGCGTATCCATCACTTTACAGAATTTAAACGTTAATTATGACAGTTCACATCttcatctttgttttttttgctttttattgtggatgcacatttaaaaagtcGTGTCACATTCTCTTCATTATTTTTGTGAGAAGTGTGAACAGTCAGAGACAGCTGGAGGAGAGgggtttttcaaaataaaggcgcgTTGATACACAAtacttgtctctttttctcagcACCTtgtgaacacaaaaaaatatatatatcagagatcagtctgtctctctctgtctgtctctctctctctctctgtctgtctgtctgtctgtctctctgtgtgtctgtctctctgtctatgtctgtctgtctgtctgtctctctctctgtctctgtctctctgtctgtctgtgtctctctgtgtgtctgtctctctgtctatgtctgtctgtctgtctgtctgtctgtctctctctctctctgtgtctgtctctctctctgtctctctctctgtctgaagAAGACTCGGAGTATCTGGCCCCTCAGTGGCTGACGTTCATCTCGC
>TU91347
cacagacacacacacacacacagaggcagactcacacaaacacacacacacagaggcagacagacagacacacacacacagaggcagacagacagacacacacacacagaggcagacagacacacacacagaggcagacagacacacacacacacagaggcagacagacacacacacacagaggcagacagacacacacacacagaggcagacagacacgcacagagagacagacagacacacgcacacacacagacacagaggcagACATTAACATCAGCTTCGTCTTTAAGAGAAACTGAGTcagacatttttcactattttctgacattttatagatggAACGATGAAAACAGTCGTACTTATACTCTATAATAtagtataagtatatatatgtataagtgTGTATATACACACTTATACTCTGGTAAGTAGAGCAGCAAAGAGTTAGTCGATCGACAGAGAAATAACAGCCAATTATTTGAAAACttgattaatcgttcagcctaaaaaataaatcagaaaatgttGTTTTCATCCTCTGcttcttttctgttttgtgtcaTATTAAACTGATTATTGATTTTAGTTTCTAGACAGAAGAAGACATTTGAACAAAGACATCATCTTGAGAAACCACTTTGAGAAACTGAAAAGACAATTTCTTTTGGCGTTTTCCGACTTTTTGGTTAATACTTGATACAGGAAACGAGCGTTAGTTGCAGCTTTATAACTATTATTTGTACCTGTTTTAGTACTAATGTCCTAAAAAATGTCCTAACTTTAAACAAGCCatgtgttttacttttatttttca
>TU91348
tttttttttttaagtgtttcaAACTTCTTCATTTGTACGTTTTTGTcatgttattttaacatttttttttttttagacattctCAACActtttttcccgccatttttttttttttcgtttttcgaCCTTTTCTAAAAGCTGGTTGAaggactgaaagagagacgctCCACCGTCCTCCACCGCTGGAACACGctggaaaaatataaaaatattaagagGAATATTCACACATTAGCCGAGTCGACAGCTTAGAGGAAGATGGGgtttttcagaataaaacagGAACatgatgtgcatgtaaacgtagtcgctgccatgttgttctTCCGTGTAAATATACGAGCGTATCCATCACTTTACAGAATTTAAACGTTAATTATGACAGTTCACATCttcatctttgttttttttgctttttattgtggatgcacatttaaaaagtcGTGTCACATTCTCTTCATTATTTTTGTGAGAAGTGTGAACAGTCAGAGACAGCTGGAGGAGAGgggtttttcaaaataaaggcgcgTTGATACACAAtacttgtctctttttctcagcACCTtgtgaacacaaaaaaatatatatatcagagatcagtctgtctctctctgtctgtctctgtctgtctctctctctctctctctctctatctctctctcttctctctcaccggtagcctgactctgtccctccgttgcgaggcagcgggcccctcccgcatcactctctctgtcacctgacagcagctggatctctctcctctctgtctcatcctctctgacggagctaccaaactcaactctttctgtaaaagagaacgtgttgtctcaggcttttatacaagctaatggacgttaacatgagagctggc

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU91335 False 922 lncRNA 0.40 3 41774852 41829669
TU91342 True 954 lncRNA 0.40 4 41735500 41829669
TU91345 False 761 lncRNA 0.43 2 41795533 41796429
TU91347 False 817 lncRNA 0.38 2 41775045 41829669
TU91348 False 874 lncRNA 0.40 2 41795408 41848568

Neighbor

gene id symbol gene type direction distance location
LOC120560218 NA coding upstream 24294 41707504 ~ 41711206 (+)
LOC120560215 NA coding upstream 33000 41699362 ~ 41702500 (+)
LOC120560214 NA coding upstream 80850 41641330 ~ 41654650 (+)
LOC120560213 NA coding upstream 99611 41630736 ~ 41635889 (+)
LOC120560217 NA coding upstream 115848 41609932 ~ 41619652 (+)
npc1l1 npc1l1 coding downstream 40771 41889339 ~ 41932196 (+)
LOC120561109 NA coding downstream 204853 42053421 ~ 42070713 (+)
LOC120560236 LOC103396904,LOC100693342,LOC103375480,LOC104933652,LOC104940903 coding downstream 292015 42140583 ~ 42147455 (+)
LOC120560233 LOC103473932 coding downstream 302063 42150631 ~ 42158948 (+)
LOC120560192 NA coding downstream 369594 42218162 ~ 42240929 (+)
G68387 NA non-coding upstream 90309 41564760 ~ 41645191 (+)
G68388 NA non-coding upstream 143633 41541203 ~ 41591867 (+)
G68374 NA non-coding upstream 182756 41481243 ~ 41552744 (+)
G68358 NA non-coding upstream 185807 41432386 ~ 41549693 (+)
G68378 NA non-coding upstream 231582 41498577 ~ 41503918 (+)
G68366 NA non-coding downstream 15207 41863775 ~ 41927919 (+)
G68368 NA non-coding downstream 31073 41879641 ~ 41955174 (+)
G68425 NA non-coding downstream 44341 41892909 ~ 41916660 (+)
G68426 NA non-coding downstream 49358 41897926 ~ 41898429 (+)
G68427 NA non-coding downstream 54333 41902901 ~ 41903590 (+)
G68349 NA other upstream 330686 41366584 ~ 41404814 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other upstream 464651 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other upstream 467981 41266647 ~ 41267519 (+)
LOC120561096 NA other upstream 637704 41081607 ~ 41097796 (+)
G68309 NA other upstream 664851 40983824 ~ 41070649 (+)
G68429 NA other downstream 61256 41909824 ~ 42005961 (+)
LOC120561105 NA other downstream 83995 41932563 ~ 41939058 (+)
G68504 NA other downstream 473905 42322473 ~ 42396643 (+)
G68598 NA other downstream 1115472 42964040 ~ 43023819 (+)
LOC120561116 LOC101485158,LOC102302930,LOC100699693,LOC106633016 other downstream 1127578 42976146 ~ 42998383 (+)

Expression


Co-expression Network