RNA id: XM_039802450.1


Basic Information

Item Value
RNA id XM_039802450.1
length 5001
RNA type mRNA
GC content 0.55
exon number 21
gene id npc1l1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41889339 ~ 41932196 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCAGACAGCAAACAGGAGAGGCTGTCTGCCTTTACTGTCTCTTATGTATATCTTCCAACAGGACAGCAGTGattcatattaatattaatttacaCTCCTACATTACAAACTGTGCCTGAGGATTATTCAGTGGCTGAAACACTCTCAGGAATCATGGTCCGTGTTGCAGCGCTGATCACTTTTCTGACTTGTGTGCTGCTGTCGGAGGCCCAACATGAGCCGGGCTTCTGCTCTTTCTACGAGGAGTGTGGAATGAACCCTTCAGCCGGAGGCACACTCATCGCCCCCATCGTTCCATGTCTGAACTACAGCCCTGCCCGAGCCCTCGTAGGAGAGCACTACAGGCAACTCAAAAAGGTTTGTCCCATTTTGGACCGCGGGGAGGGCGAAACGTTCGCCTGCTGCTCCATCCAACAGCTGTCATCCTTGTCAAAGAGTCTGGCCCTGTCCAAGGCGGTGCTGGTCCGCTGCCCGTCCTGTGCCGAGAACTTTGCCCACGTGCATTGCATCAACACCTGCAGCCCCAACCAGAGCCAGACCGTCAAAGTCACCAAAGTCGCCAACATCACGAACCCGCTGACCAACGTGACGAGGGAGGCCGTGGTAGCCTACCAGGCGTTCATGACTGCTTCCTTCGCCGACACCGCGTTCCAGTCCTGCAGGAACGTCCGGATCCCCGCCACAGGCGGCTTCGCCATCGCCACCATGTGTGGCCGATATGGCGCCAAGCTGTGCACGCCGCAGCACTGGTACGACTTCCAGGGCGACTCCAGCAACGGCCTGGCGCCGCTGGACATCGACTTCCAGCTGGTGAAAGACGGAGACACTCAGGGACTACCGCCGGGCGTGATTCCCTACAACGGGCGCGCTCTGAGGTGTAACGAAACCACGCCATCTGGCGGCGAGGTTTGCTCGTGCCAGGACTGCCAGGAGTCGTGTCCGAAGATGCCGCCTCCGGAGATGCCACCTGGCCCGTTCAGAATTTTAGGAATGGACGGTTTCCTCTTTATTTCCATAATCTTACTGTGCGTTCTGATGTGTAGCTTCCTTCTCTACCTCGTCGTGTCGTGCTTTTCGAGGTCTCAGAAAAGAAAGGATGAAGAGAAAGGGAAGAGAAAGGGGAAAGGCAAAGACCAGAACAGCAACGATGTGACTCAAAGGATCATCGACCCGTCCGAGGTGACCTGCGCCGAGAGGAACAGCATGGCGGCTCAAGCTTTCCTGAGTTTAGAGTTTCGCCACTGGGGAACCCTCATGGCCTCGTATCCACTCACGGTTCTGCTGGTGTCGGCGGTAGTCGTAGCTGTTTTCTCCGCTGGCCTGAAGTCCATCGAACTGACCACTGACCCGGTGGATCTTTGGTCGGCGGCCAACAGCCGCGCTCGCCAGGAGAAAGACTTCCACGACTCGCACTTCGGCCCGTTCTTCAGGACCAATCAGGTGATCCTGACGGCGCCGGGCAGAAAGGGCCACGTTTACGACTCTCTGCTGTTCGGAAAGCAGAACTTCAGCGGGCTCGTATCCAAAGATCTCATCATCGAGCTGCTGGAGCTGCAGACACGAATCCGGGACATTGAGTTCTGGTCTGAGGATCTGAACAGAACAGTGAGTCTGAAGGATGTGTGTTTTGCGCCGCTGAACCCGTCCAACCCCTCAGTGACGGACTGTGCAGTCAACAGCTTGCCGCAGTACTTCCAGAACAGCCTGTACAACATCAACGACAAGAAGAACGTGACGCAGCTGGGAGTGACTGCAGAGGTGGACTGGAGGGACCATTTAATCTACTGCCTCAACTCTCCCCTGTCCTTCAAAGACATCACCGGTTTAGACATGAGCTGCATGGCTGATTACGGAGCTCCCGTCTTCCCCTTTCTGGCTGTAGGAGGCTACGAGAATGACGACTTCACCAATGCCGAGGCTTTCATCCTGACCTTCTCGCTCAACAACTTTGCTCGCAACAACCCAAAGTTCAAAATGGCCATGCAGTGGGAGACGGAGTTTCTTAAAATTGTCCAGGACTACAAGAAGAACGCCAACTTCACCTTTGCGTACATGGCAGAGAGATCTCTGGAGGATGAGATTAATCGGACAACAGCAGAAGACATCCCTATCTTCATGATCAGCTATGCTGTCATCTTTGTTTACATCGCGGTGGCGCTGGGGGAGTACTCTTCCTGGAAACGCATACTGGTGGACTCTAAGTTTCTGGTGGGTCTGGGCGGGATTCTGGTGGTGGGCTGTTCTGTTCTGGCCTCCATGGGTTTCTACTCCTGGATCGGCATCCCGTCCTCGCTGGTTATTCTGCAGGTCGTGCCTTTCCTGGTGCTCGCCGTCGGAGCCGACAACATCTTCATCTTCGTTCTGGAGTACCAGAGAGACGTGCGGAGGCccggagagaagagagaggaacacATTGGTCGTGTACTTGGAAACGTAGCTCCCAGCATGCTCCTGTGCAGTCTCTCCGAGTCCATCTGCTTCTTTCTAGGCGCCCTGTCCACCATGCCAGCAGTGCGCTCCTTTGCTCTGTACGCTGCTCTGGCCGTGCTCATGGACTTCATCCTCCAGATGACAGCCTTTGTGGCGCTGCTGTCGCTGGACGCCCGTCGCCAAGACAACAACCGCTGTGAGCTGGCGTGCTGCGTCACCGTGTCGACCCCGCGGTCCAACGAACCAAACGAGGGCTTCCTGCTGCCCTTCATGAGAAAATACTACGCCCCAGTTCTGCTGCACAGCTACACCAGGATCATAGTGATGGTGGTCTTCATCTTCATGCTGTGTGGATCTGTGTTCCTGATGTTTAACGTGACCGTGGGTCTGGATCAGGAGCTGGCTATGCCTCAGGGCTCCTACATGTTGGACTATTTCCACTATCTCTACAAGTACTTTGAAGTGGGAGTCCCTGTTTATTTTGTGACTAAAAGAGGCTTCAACTTCACCACCGTGGAAGGCATGAACGCAGTCTGCTCCAGCACGGGCTGCGATCAGTTCTCACTAACCCAGAAGATCCAGTACGCCACCAACCACCCTGAACTATCCTACTTGGCTATTCCTGCTAACTCCTGGGTGGACGATTTCATCGACTGGCTGAACCCCGGATCCAGATGTTGTCGTCTCTACACCACCCTCGATTCAAATAACGGAAAGTTTTGTCCTGCGAGCGAACCTGACTTCCGATGTTTCCGAAAGTGTATGCCGTTTCCTTCAGACGGCGTCCTCAGGCCAAGTACGGAAAAATTCAACCACTTCCTCCCTGACTTCCTGGGGAACAGGCCGGACCTGCAGTGCCCCAAAGGCGGTCTCGGCGCCTACGACACAGCTGTCGTACGAGATGAGAGCGGAGAAATTATAGCGTCTCGCTTCATGGCGTACCACACGCCTCTCACCAACTCTCAGGAGTTCACGGCCGCGCTGCTGAAGGCCAGAGAGCTCGCACTCAACATCACCAAGACCATGAGGAGTATATCCGGCACCTCGCCGGACTTCGAAGTCTTCCCTTACACgaTAACGAATGTGTTTTACGAGCAGTACCTGACCATCGTGCCGGAGGGCCTCTTCAACATCTCCCTGTGTCTGCTGCCGACCTTCGTGGTGTGCTGCCTGCTGCTGGGTCTGGACCTGCGGTCCGGTCTGCTCAACCTGCTCACCATCATCATGATCATCGTGGACACCGTGGGCGTCATGACGCTGTGGGGCATCCACTACAACGCCGTGGCGCTCATCAACCTGGTCACGGCCGTGGGGATCTCGGTGGAGTTCGTGTCCCACATGACGAGGTCTTTTGCACTCAGCACTAAACCCACCCACGTAGAGAGAGCCAAGGAGGCCACGGCCAACATGGGCAGCGCGGTGTTTGCCGGCGTGGCGATGACCAACCTGCCGGGCATCCTGGTTCTGGCGTTTGCCAAAGCCCAGCTGATCCAGATCTTCTTCTTCCGGCTGAACCTGGTCATCACGCTGCTGGGTCTGGCTCACGGTCTGGTCTTCCTCCCGGTGCTGCTCAGCTACTTCggtCCCGGTGTGAACAAGGCcgtgctgctgcagcagcaacagGACAAGGCCAAGGCCTCCAAAGACCTGCAGCTGAGGAACCAGATCAGACACGCGTACGATAACCTGAGCTACGAAGAGGACGCCATGGGACAGGACAGCAGCGAGTCCAAGACGCCGCCGACGGACGCCAGCACACGCTCGCACGTTACGGAGAAACCAGACGGCGAGACGGAGGAGACGATCGACCGATTCTGAGCAtcgacatatatatatatatatatatatacctccgAACAAACTGAATGGAAAGCTCCGGACGCACATCACTAACTTAACTTTGGACCTAGAAACCCTTCTACAGAAACCAGGCGCGCTGCATTTATTtatgctttgtgtgtttttacgaGATGTGAAAACTTATTAGACTGTTTTAGCGTCACAAAGACGCACTTCACCGCCCGCCCGAtctcacaaaatacacacaacacaccaaagGGCTTTTTATATTCTGCAAAATattgttaattttattttctatgaATTGTTTGACttaacttaaaggtgctgtaggtaggatggtgaagatccaggacattgacaacttctcagtccctcctccctttctgctaaagcccaaaacggtctcctaagctcctccccccacaagggagaatgaatgcgtgtgcatgagcagttagacaccccctctggccctgattggtgaaTCTGAACAGTTAAGACAactcccctggccctgattggtgcatctgaacagttagacacccctgCCTGGCCctaattggtgcatctgaacagttagacacctctacctggccctgattggtgcatctgaacagttagacacacccctctggccctgattggtgcatctgaacagttagacccTCCCCTCTGGCCcagattggtgcatctgaacagttagacccTCCCCTTGGCcgtgattggtgcatctgaataGTTAGACCCTCCCCTCTGGCCCAGATTG

Function

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91348 lncRNA upstream 40771 41795408 ~ 41848568 (+) False G68359
TU91342 lncRNA upstream 59670 41735500 ~ 41829669 (+) True G68359
TU91335 lncRNA upstream 59670 41774852 ~ 41829669 (+) False G68359
TU91347 lncRNA upstream 59670 41775045 ~ 41829669 (+) False G68359
TU91441 lncRNA upstream 84262 41767117 ~ 41805077 (+) True G68411
TU91352 lncRNA downstream 3251 41935447 ~ 41939058 (+) True LOC120561105
TU91485 lncRNA downstream 11500 41943696 ~ 42008298 (+) False G68433
TU91487 lncRNA downstream 11500 41943696 ~ 42008298 (+) False G68433
TU91489 lncRNA downstream 11500 41943696 ~ 41953714 (+) False G68433
TU91491 lncRNA downstream 11500 41943696 ~ 42008298 (+) False G68433
XM_039804055.1 mRNA upstream 96428 41720800 ~ 41792911 (+) True aebp1b
XM_039802491.1 mRNA upstream 178133 41707504 ~ 41711206 (+) True LOC120560218
XM_039802489.1 mRNA upstream 186839 41699362 ~ 41702500 (+) True LOC120560215
XM_039802487.1 mRNA upstream 234689 41641330 ~ 41654650 (+) True LOC120560214
XM_039802486.1 mRNA upstream 253450 41630736 ~ 41635889 (+) True LOC120560213
XM_039804058.1 mRNA downstream 661 41932857 ~ 41938290 (+) False LOC120561105
XM_039804061.1 mRNA downstream 121225 42053421 ~ 42070713 (+) True LOC120561109
XM_039802517.1 mRNA downstream 208387 42140583 ~ 42147455 (+) True LOC120560236
XM_039802512.1 mRNA downstream 218435 42150631 ~ 42158948 (+) True LOC120560233
XM_039802435.1 mRNA downstream 285966 42218162 ~ 42240929 (+) True LOC120560192
TU91431 other upstream 133211 41721013 ~ 41756128 (+) False aebp1b
TU91319 other upstream 488766 41366584 ~ 41400573 (+) False G68349
TU91301 other upstream 621865 41266726 ~ 41267474 (+) False LOC120561097
TU91279 other upstream 626989 41207784 ~ 41262350 (+) False anxa1a
TU91474 other downstream 367 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other downstream 367 41932563 ~ 41934316 (+) False LOC120561105
TU91611 other downstream 390277 42322473 ~ 42396643 (+) True G68504
TU91750 other downstream 1031844 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 1043950 42976146 ~ 42998262 (+) True LOC120561116

Expression Profile