RNA id: TU91352


Basic Information

Item Value
RNA id TU91352
length 2860
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC120561105
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41932563 ~ 41939058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatattaaatatcagacttttaataaataaatatataaaataaacttttaaGACCTGGTGGGAATcgtgaatgaatgaagaaaacGCCAAACATTTTGGGTATttcagattttgttttattaacaaGGCGTCCCTTTGATAGGATCGTATGTTTCTTTAGGTCCTCAATGCCccaaaaacatactgtacacattaTACAAGGGGGACCACGACTCAGGCAACgaaaaactaaacagaaaacatttttaaattataatACAGTCTCgaggaaaaaatataaataagttTTTGTTGTCTTCTCTGGTTGAGCTCCCTCTATGGTACAGACTTAAAATAAATAGATCAGATCTGACCTATGAATCCTCTCTCTACGAGTCCGTGTGTGTAGCAGCATCATCGCAAAACGAGCCAATGGAAACAGAGATCCCCCGTTTCCCTGGAAACCTTTTACAGGTCATCATTTAGTCACATCGTCACACAGCCGCCTCCgtctcagccaatcacagacgcCGATGTTGTAGAAAACAGATCCAGGGGggtttatatatacacacacacacacacacacgcacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacaaacacagacaaagacacacacacacacacgcacacgcacgcacgcacgcacacacacacacacacaatggcagCGTGTAATGGCAAACTACTCTTTTAGATTTTAAACTCTTACAAGCGAGAAACACGTTACGACGTGGCCATGCTGGTTGCACATGCAGCGAGGTGAAGAAGGCGCCGAGAGCAAACGTTTGGTATTAAAATCTGTCCCGAATAACTTAAACTATGGATAACTTCCCAAAAGACCACGCCACATCCTGAGGAGAAACGGTACAGGGTAACTGGGTTCCCCCAAAGCTTTCAACCCTACGGGACAAATATTCAGCATCAGTTatcgctgacagactcagattattactCTGAGTGTCTGACagcattatgggatggatccctacagagatagaccttttagttaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatggagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatggagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcatgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagaggtgattgttggaacagtggaaagatgaaccaagacagcttttggaagttttatttagtttctgtccactttgaatgaagtgtgttttacgatgctaaaagtcctgattatttacatggagtctggtggagtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctctctctgtagggatccatcccataatgttgtcagacacttagaataataatctgagtctgtcagcagcaacaacagaacttttagtggacgctaaactggagattgttgttcccatcagtacCTCAGACACAAAAAACACGGGAAAATAGAGTCCAAAGTTACCCTGTGAAAGATGACATTAAAAATGGTTTTCTCCTCTTGTGTCAGGGCGGCAGATTTAGTGTTTAAGAAAATACAACAGCGGTGATGTCTGATTGTCTTGAGATACAGGAAATAGAAaagtaagtgtgtgtctgtgaggctACAGGttggagagtgagagagtgagagagagagagagagacgaaggAGAAGCAgacagtgcagagagagagacaggtgggGAGATATGAAGCAGGTAAGGTTGTAAAAACAGCGGGACTCTCTGTAGTGTTTAAGTTTGGTACGGAGAAGAGTCCGAGGAATCACTGGGTAGACACGAAGACATGCCTTTGTTCATTTCATCGCGGAGAACTCTCCTCTggaaggagagaaaaggaggtCTTCCTCCCTCGCTGAACACAACGGGAGCCTGTGTGGTAACGGTCCGGCTCAGCGCTTGTGTTATCGAGTCTAAAGAGACAGTATTTGGTTAAACTTCTCCCCCTTTTTCCTgttaacaaaaaactaaaaagtctcAAACAGCGTTAGGTGTGTTGGGTTAGGCTCACAGATCCCCAGGTCCTgggtctgagagagagaggcgagcggcctcctcttcctcggcTGTGGTTGTGCGTTTTTGGGAGCGACAGAAACACGCCGATGCCTCCAGCAGACCTGCGTCTCATCTTCTCTCAGTCGTGTTTTCGGGttaaggagggagggaggggggtggtttttttgggggggggggctgtgcaGGTACACGATCAGGACTCTGTAGGCGGGTCTGCGTCCTCTTCCACAGCTTTCGGGAGCTTCGTCAGGATCGCCTCGGCTTCCTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91361 lncRNA upstream 6306 41928654 ~ 41929141 (+) True G68369
TU91358 lncRNA upstream 7528 41863775 ~ 41927919 (+) True G68366
TU91462 lncRNA upstream 18787 41892909 ~ 41916660 (+) True G68425
TU91470 lncRNA upstream 31857 41902901 ~ 41903590 (+) True G68427
TU91463 lncRNA upstream 37018 41897926 ~ 41898429 (+) True G68426
TU91485 lncRNA downstream 4638 41943696 ~ 42008298 (+) False G68433
TU91487 lncRNA downstream 4638 41943696 ~ 42008298 (+) False G68433
TU91489 lncRNA downstream 4638 41943696 ~ 41953714 (+) False G68433
TU91491 lncRNA downstream 4638 41943696 ~ 42008298 (+) False G68433
TU91356 lncRNA downstream 15646 41954704 ~ 41993490 (+) True G68364
XM_039802450.1 mRNA upstream 3251 41889339 ~ 41932196 (+) True npc1l1
XM_039804055.1 mRNA upstream 142536 41720800 ~ 41792911 (+) True aebp1b
XM_039802491.1 mRNA upstream 224241 41707504 ~ 41711206 (+) True LOC120560218
XM_039802489.1 mRNA upstream 232947 41699362 ~ 41702500 (+) True LOC120560215
XM_039802487.1 mRNA upstream 280797 41641330 ~ 41654650 (+) True LOC120560214
XM_039804061.1 mRNA downstream 114363 42053421 ~ 42070713 (+) True LOC120561109
XM_039802517.1 mRNA downstream 201525 42140583 ~ 42147455 (+) True LOC120560236
XM_039802512.1 mRNA downstream 211573 42150631 ~ 42158948 (+) True LOC120560233
XM_039802435.1 mRNA downstream 279104 42218162 ~ 42240929 (+) True LOC120560192
XM_039802436.1 mRNA downstream 279104 42218162 ~ 42240929 (+) False LOC120560192
TU91474 other upstream 1131 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 1131 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 179319 41721013 ~ 41756128 (+) False aebp1b
TU91319 other upstream 534874 41366584 ~ 41400573 (+) False G68349
TU91301 other upstream 667973 41266726 ~ 41267474 (+) False LOC120561097
TU91611 other downstream 383415 42322473 ~ 42396643 (+) True G68504
TU91750 other downstream 1024982 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 1037088 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 1054720 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 1086240 43025298 ~ 43031225 (+) False entr1

Expression Profile