RNA id: XM_039802435.1


Basic Information

Item Value
RNA id XM_039802435.1
length 5550
RNA type mRNA
GC content 0.58
exon number 19
gene id LOC120560192
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42218162 ~ 42240929 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGGCTACCTGCGCGACCAACCGTGTGGGGAAACAACACCGAAAACAGCAACAGCTTTTCCACAATGTTGCTCCACAAAAGTGTCGAACTTCGCTTCCGgttgtGACCGATGTGATGGACAGTGCCAGACGTCCTGCTGAGCCCTGGAGAAGCTGTAAGCTGATGATTGACCCTGCTCTAACCAACGGGCTCTACAAAGTGTACCGTTACGATGGACAGCACTTCAACTTACCGGTGGAGGACTTAGGTCTGGTCCCTGTGGAGGCGGTCAGAGATCCTCGCGTCTGCAGACTGTGGAGCCAAAGCAACAACGTGGAGCTCCTGCTTTCTAGGTTCAAGGTTGATGAATGGTACGTCGGCCCCGTCCCTCCCAAAGAAGTGACCTTTTCCCGGCTGAATGACAACGTGAACGAGGCGTTCCTCACTAACATGTGCAATATCTACGGGAACGCTGAGGAGGTGGAAATATTTTACAACCCGAAGAACAAGAAGCACTTAGGGATCGCAAAGGTGGTCTTCGACACGGTGAGAGCTGCGAGAGACGCCGTGCAGCACCTCCATCAGACCTCAGTGATGGGAAATGTTATCCACGTGGAAATAGATCCTAAAGGTGAAAACAGGGCGCGGCATCTGCAGCTGCTCTCCCGAGGCTTTTACACTCCGTGCATGCTGCCGGTGGGCAGCAGCGAGCCAACGCTCCAGAGCTTAATCGACAGTCTGCTGGGCAGCGCAGCCAATCAGCGGCAGCCGAGCAGCTTAAGCCCCACCCTGTCTCTGGACACCGCCTACTCCAGTATTTGGCAGGACACGCCGGGCAGCTTCGGGCTCACCCCTCGCTCTCAGGGAACTCCCTGCTTCTCCCAGGACTCGTGTTACTCCAGTCTGCAGGCGACTCCCGTCCTGCAGGGGGAGCCCTCCGTCTCCGTCCTCAGTGTCCACAACCCCTTGAGACGTAAACTCGTGGCGAGGTTTCCCAGCAGACGATCTGCCGAGGACCCTGAcgtttttttaaagcattacaACAACGCAACCAGCAGACAGCAGCTCACTCTGTGCAGTCACAACACACAATCCtccactcacaacaacacagaccTCGCCTCCCCTGCTCAGGAGTCCACGGACGGGTTTGGGGTCACCGGTACGTCTCCAGACTCTTTCAGCATCCTGAGATTTAACTTCACAGCCGCCCAGCAGACGGCCGCTTCCTCGCTGCCGCGGCAACACGAACGCGTTACAGACGGTTCTTCCGAGAGTTTGGACTCCCGTATTGAGAGTTTGCTGACAAACAGCCAGACTGAACCGTCGCACTTGGACAGGAGGACTTTAACGTTTCTTGATCAGAATCAGGACAGTCCGACCTCGCCGCTCTCAGACGGCTCGCTTGTTTGCACTTCCTGCGACATCACAACCGGCTGCCATTGCCACGACGATGTGGAGGACGTTGATGCGTTGTCGCTGGAGGATGAAACTGCtcaagctgttttttttctgacgaGAAACTCCCCCCAGTCTCCGTCTGATTTCACTCAGAAGATTCACGGAGACACGgAGCATCATGCAGCGAATGAAGACGGGGAGCCCAGACGGTGCCAGATCTCCCCGGTTCCTCCGGCTCCGTCCGCTCACCTCCCCCCTTCCATCGCTCCTCCAAACTTTAAATCTGTCATCTCCCATCCACCCGTCCCCCCTTTCCCGTTCCCCGTCCCTCCCTTTCCTCGGTCTGTTCCACCGGTTCCACCTCGCTTGCCGAATGGCACCATCCCCATCCCTCCGCCAGGCTGGATCCCACCACCGGGCCTGATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCATCCTATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCATCCTATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCGTCCCATCCCTCCTCCAGGCCGTCCCATCCCTCCTCCAGGCCATCCCATCCCTACTGCAGGCCGTCCCATCACTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCGGATCCCTCCTCCAGGCCATCATATGCCTCCTCCAGGCAATCCCATCCCTCCTCCAGGCCATCCCATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCGGATCCCTCCTCCAGGCCATCCCATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCGGATCCCTCCTCCAGGCCATCCCATCCCTCCTCCAGGCCGTCCTATCCCTCCTCCAGGCCGGATCCCTCCTCCAGGCCGTCACATCCCTCctcccatccctcctcccttcaTTCCTCCCCCTCCAGCTTTCCTCGGACCCCCTCCATCTTTCCCTGTGCACGCTGCGTACCCGTTACCGCCACGGCCCGCAGGCCCATTGGATAAACCTCCCCCGTTCCCTCGACCGCCCTTTCTCGCTCCGCCGTTCCCCAGGTTTAACCCCTTAGTCCCTCCGCCAGACTATCCCACCGCGCCGATAAAGAACCCTCACGAAGTCACGGTGGAAAAGGTTTTAGAAGTTATTGCAGATGAACTGAAGTCGATCATTAAGAAGGACATAACACGCAGAGTGATTGAAGGTGGCGCGTTCAACGCGTTTGAGGACTGGTGGGACCGTCAAGAGAAGACAACAAAGATCCAAGTTTCTCCGGTGAAGAGCGGAGCAGCGAGCGTTCTTCTGAATCCACTCGGTCACATCGGCGGCCACAAGAGCCAAAAGCCTCCACTGCCGTCCTTCAGGGTAAAGAGGAGAAGAGACGATGACGTCGTTAGGTCAGAAGAGACAGAAACTGTAACGTGTTCTACTCACCAAAGCTCAGATGTGAAACAGGGCGAGGACGAAGCCAGACTTTGTTCTGAGAGAACCAAACGCAGACACGCACGCCCGCACGCACTCGACAGCGACGACGACgatgattatgatgatgatgatgatgatggagagaaggaagaagaagaagaagagaacacGCTTCAGGATGAAGAAACATCAGAAGAAGTGGAGGCGACTGGCCCGGCTGCTGCGGATCCTCAAAGTCTGTGTGATAGAGACGAAGGTGATGGCGCTGATCATCTGGAGGAAGAAAAACCCGCCGAGGACGAAGACGCTGTCCCAAGCAGCGACGGAGAGCGGGGCTCAGATGCCGCAGAGAGTTCTCCAGAGAGCAGCTGCTCGGAGGAGAGCCAGTTCTCCTCCGAGCAGCTGGAGAGTTTCGAAGACTCGTCGTCCTGCGACATCAGTcccgaagaggaggaggaggaggaggaggaagaggaggaagaggccgCCCGCGAGGACGCCGAGTGTATCGTCATCTCGTCAGACGAAGAGCCAATGGAGACGGAGATGTCGGCCCCGCTGACCCCCGGCGCTCTGCTGGAACCGGAAGAGATCCAcaacacttcctgtttcctggaGGAGAACCAGAACTCTTCCTGTTTCCTGGAGGATAACCAGAACTCTTCCTGTTTCCTGGAGGAGAACAGGaacacttcctgtttcctggaGGAAAACCAGAACTCTTCCTGTTTCCTGGAGGAGAACAGGaacacttcctgtttcctggaGGACAACCAGAACTCTTCCTGTTTCCTGGAGGACATGATGGAGCTGCAAACCAGCGAGCGCCAGGACCACCGCCCGCCTCCGTCGCCTGCAGGACTCCCAGCGGCCGAGCCACACCTGGACGTGGAGATGGAAAGCCCTGATTGGGCGGAGGAGTCTCCCTGCAGGCCGGTGACTCCGACCGGCTCCCTGCCGGACAGCGACCCAGACCTCCGGCTCAGAAGCTCGTCTCCGGCAGCGGAGGAGGTGGAGCGGCCGCCGACGCCGGGGAAAGGGATCGTGGTCGGACCGGACAGCGAAGACTCTGCCGACGATGACGTTGTGTCTCTCTCCTCGGCAGACAGCGAGCTCGTTCTCGCTCCCTCTGACCCCCCGGGCTCGTTCCCTTCGTACCAGGAAATGCCCCAAACTCCCGGCAGAGAGGAGAGGCTTGGATGGACTCGGTGCTGCTCGCCACCGGTGATTAACCCGTACGTCACGGCCCCGAAGACTCCCGGGAGAGACATCATCATACCCAGAAGATCCTTATTCCACACGAGGAAGACacaaagCCTCTCGGAGTCTTCCTCCGACTCCTCCGACGGGAACGCTGCCTGGATGAGTTCCTGCGTGAGAGCGAAGCCGCTGCGGGGGCTGGAGAACATGCCGGGGCGTCTGGGCGAGACGGAGAAATCCTTACGGAGGAGAAAACACTGGAGGAGGCGAAGGAGGAGGCTCCGTCATCGGAGGAGGATCGCCCGTTCCCTGTCCTCGCAGCGTGAGCCTGGGCCGTGGCGTTCCCGCGGCCAGGAGACCAGGATCCTACACAGCGTGTGGACGGACGGCCTGGACGAAGAAGACGCGCGGCTGCTGCGGTGCACGTACGAGCGGCTGCAGGAGGTCGACAGCAGCCTCGGCTGGATCAGCGACACGCGTTGGGTTCCTCACCCTCTGACTAAAGTCGTTGCGGAGAAGAGTTCGGAACACGATCACCGGACCGGCTCGGCTCGCAGCGAAGGTTTCTACAGAATCAGCCGGAGAGAGAAGATGAAATATCTCAACGACACGACGCCGGCGGCTGAGCTTCCCTCGACCAGCTCTCAGCAGGGAACGAGTTCGCTGCGTGCTGGATCGGACTTCCGCTCGGAGCAGCGCCGCCTGCTGGCGTCCTTCAGCTGCGACAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTCCGGAAGAAGAGGATCCGTTTCAGCCGGAGTCATATTCACGAGTGGGGCCTGTTCGCCATGGAGCCGATCGCAGCAGACGAGATGGTGATCGAGTACGTGGGACAAATCATCAGACAGgTGGTGGCTGACATGAGGGAGCAGCGGTACGAGGAGCAGGGCATCGGGAGCAGCTATCTGTTCCGGGTGGACCAGGAAACCATCATCGACGCTACCAAATGGGGGAACCTGTCGCGCttcatcaaccacagctgcagcCCTAACTGTTATGCAAAGATCATCAGTGTGGAGTCTCAGAAGAAGATCGTGATTTACTCCCGGCAGCCGATCAGCATCAACGAAGAGGTCACGTACGACTACAAGTTCCCCATAGAGGAGACCAAGATCCCCTGTTTGTGTGGAGCGGAGAGCTGCCGCGGCTCCCTCAACTAAACTCTGACAGAATGTCTGATTATTAATGGCTCTTCACACAGGGAGTGACAGTCCGCCTGCGTAGTCGCGTGGATCCGCGGACTCTACTGCACTCCTCATGTGAACAGACAAGCGGGCAACGCTCCGCCTGTAAACGCCAGGCGATCGGTGTGTGGTAACCATCGAGTAGGGATGAAACTCACTCTGTGTGAGTTCTCACTTGGACCAACAAGCCACTATTTTGGCTGAAATCTTTTCCACATGTTTTGCAAGAATATGACTTCtcactagggatgcaccgaatccagattttcagggttcggccgaataccgaatcccctggttgagattgtgctgactcctcctcccat

Function

GO: NA

KEGG:

id description
K11422 SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91183 lncRNA upstream 6589 42189494 ~ 42211573 (+) True G68260
TU91187 lncRNA upstream 7358 42208679 ~ 42210804 (+) True G68264
TU91186 lncRNA upstream 40404 42175818 ~ 42177758 (+) True G68263
TU91582 lncRNA upstream 44196 42162738 ~ 42173966 (+) True G68486
TU91516 lncRNA upstream 78098 42039864 ~ 42140064 (+) False G68451
TU91594 lncRNA downstream 8982 42249911 ~ 42251607 (+) True G68491
TU91598 lncRNA downstream 38051 42278980 ~ 42331646 (+) True G68495
TU91622 lncRNA downstream 114568 42355497 ~ 42492253 (+) True G68507
TU91621 lncRNA downstream 145025 42385954 ~ 42396402 (+) True G68506
TU91636 lncRNA downstream 294338 42535267 ~ 42536646 (+) True G68512
XM_039802512.1 mRNA upstream 59214 42150631 ~ 42158948 (+) True LOC120560233
XM_039802517.1 mRNA upstream 70707 42140583 ~ 42147455 (+) True LOC120560236
XM_039804061.1 mRNA upstream 147449 42053421 ~ 42070713 (+) True LOC120561109
XM_039804058.1 mRNA upstream 279872 41932857 ~ 41938290 (+) False LOC120561105
XM_039802450.1 mRNA upstream 285966 41889339 ~ 41932196 (+) True npc1l1
XM_039802462.1 mRNA downstream 81545 42322474 ~ 42420106 (+) False LOC120560201
XM_039802463.1 mRNA downstream 81659 42322588 ~ 42355354 (+) True LOC120560201
XM_039802522.1 mRNA downstream 133205 42374134 ~ 42411976 (+) True LOC120560243
XM_039804063.1 mRNA downstream 184774 42425703 ~ 42435600 (+) True LOC120561112
XM_039802474.1 mRNA downstream 209352 42450281 ~ 42490262 (+) True LOC120560205
TU91472 other upstream 212201 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 283846 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 283846 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 462034 41721013 ~ 41756128 (+) False aebp1b
TU91319 other upstream 817589 41366584 ~ 41400573 (+) False G68349
TU91611 other downstream 81544 42322473 ~ 42396643 (+) True G68504
TU91750 other downstream 723111 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 735217 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 752849 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 784369 43025298 ~ 43031225 (+) False entr1

Expression Profile