RNA id: XM_039802474.1


Basic Information

Item Value
RNA id XM_039802474.1
length 3273
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120560205
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42450281 ~ 42490262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGAGGAATGTCTGGCCAAGGTGGCTGCAACAGCCTACAACCAAGAGGACTGCCATCCTAAAACTACAACATCCAGTTCTGCGTCAGCGAGAGCCAGCTGCCAGCAATCCAGCAGATCCAACCTGAGGACAGCACATGTGAGGatcagagcagagagcagacagaCGGGAAGACGGACGCAGAGAGACCCTCCACCTGGACATGGACCacctgatgctgctgctgctgctgtggagcTCAGGACTCCAGGCTGAAGGAGAACTCACCTCAACAgAGTCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTAGAGGAAGACTGGAGGTGAAACATAAAGGAGAATGGAGACGAGTGGATAGTGACTATGACTCTGACTGGACCCTGAAGACAGCAGCTGCTGCCTGCAGAGAGTCAGACTGTGGCTCTGCTGTTTCTGTAGAGATTGAAGAGTCCTCAGTCAGATCTGTGTGGTGGATCAGGTCTGACTGTGTTGAGTCTGGATCTGCTCTGAGGGAGTGTGTAAGACCAGATTCCTCTTCCTCCGTCCTTTATCTCACCTGCTCAGgtaGGCGATGCTGCGCTCCGGTCatgtctccctcgctctcaacctcttctctctaCACACTCAACTCTAGACACACTCACTCAGATTTTCACAGTGTTACTGTCAGGTTTCACAAAAACAGGAACCCAAATGCAGACCCAGATGAGgATGCAGAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGCGCTCTATGGAGAAGTGGAGCCTCCAATGAGGACCAAAGAGTTCCAGTGTGGAGGCCATGAGTCTGCTCTCCTGGACTGTAGAAGCTCAGGCTCAGATAGAAACACCTGCTCACCTGGAAAAGCTGTTGgactcacctgctcagAGCCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTGCAGGAACACTGGAGGTTAAATATAACGGAGAATGGAGACCTGTCATTTACCTTGACTCTGACTGGCACCTGAAGGTAGTAGATCTTGCCTGCAGAGAGTCAGACTGTGGCTCTGCTGTTTCTGTAGAGAGAGAAGAGTCCTCAGACAGATCTGTGTGGAGGATCAGGTCTGGCTGTGATGCGTCTGTATCTGCTGTGAGGGAGTGTGCATCATCacattcctcttcctccttccttcatcTCACCTGCTCAGACCTGCTGCTTCAGCCCAACATCTCTGTGTCCTCCTCCATGGTCGGGGTCTCCGAGGAGGACCAGCAGGAGGTGTTCCAGGTGTTCTGGGGCTCCACCTTCACCATCAGCTGCTCCATCCAGCCACAGTACCCAGGAGGCTCCTTCCAGCTCACCTTCACCTCCTCCAACTCAGCACACAACTCCACCCAGCCAGCTGTCAATCACTctgcccacttcctgtttcctgctgcAGAGCCCGCCCACCAAGGAAGCTACAGCTGTGTTTATCACCTCTATGTTTTCTCTCATAACTTCTCCTCTGAGAGCAGTGTGCTCTCTCTCAGCGTCATGGATCCGAGGCCTCTAATCATCAGAGCGATCCTCCTGCCGCTGATTCTGCTGGTGGAGAACATTGTCCTTTACTTCTACTGTAGGGCCAGAAGGGGTCAGCTGCCGTGCAGACAGAAGAACATTGATGTCCAGGCCAGCAAGGGGCAGCTGCCGTGCAGACAGAAGAACATTGAGCTGGATTATTATAACCTGGGTGTCCCTGCAGCTGAAGGAGGGCCGACTGAAGAGGAAGGATCTCAGGGAGCAGAGTAGCACCTCCAAGGAGCTCATGGAGGTTAAGCTTTTTATGCACCTTTTTACCCCCACTTTTACCCGCAAATTCCCATTTATTTACCCTTACAAAACTTCAATTAATTTAGATTGGCACATGCTGGGGACTTGTGTACAAAATCTGGAGTCTCTGGGTCCAATCTGAGAGGAAATATGagttttaaaaagtacattttactgACAAGCATTATTCTTCCCATATGTCCAGACCCTGATTTAGGTACCCAGTAGGGGTCCTTAGGATGGACCCAGGACCACCAGAACTGGGTCATAAATTCTACAGAACTCCTTGATTTGGAAAAGGTTCCAActgatttttaaaatttttttttttcactgaaaccCCCTGGTATTCCCAAAATTTTTAAAGAGCTTTGCCATTCACAAGCACAATTAGAGGGTAACTACCgcttcaacctggaccctattttctatgtttttgtgtctaagttactgatgggaacaaccatctttgacattggtccggTATTAACCCTCCTAACCCCCAAACAGGtttaaaaaagcatgttttgttaaaagatTGCCAAAGAAAAACCACTTACCTCTAGAAAGTAGctgaaaaaacagtagttaccttTCAAGGTACAACTGGAAAGAGTGGTCGATAACCTTAAAATAGCTTCCGCACTCGCCCATTTTTAGTATCCACCCAGGCCAAACTTTCCCATGCGGCCATCTCAATTTCTTCGGTTTTTCCAGCAAGTCGTAACTGGGATAAAGAAAAGAGTCTTTTATTTCACAGCCATTCCAGATTGTTCTCTCCTCAAGACTAAAGTTATCTGCATGTACTGTTGATGTGATCTGACTTACCACCAGATTATGTCAAGTCTCAAACAACACTTGGGctttaaaaacttgaaaaacatCCCTTTTAAAGTAGATTTAGAACAGATTAAAAATGTGCCATTTGCGTTATATCACAAGTCAACTACAGACAATCATATAATTAATCACAATCAGATGTTTTTGTGTTGACATccctaattaaaataaatggaaaaaaaagaattgacaaaaactaaaaattctttgattagGATTTTATCGTGAAACACCAGAAAACGTTCCAGGTTGGTGCATCTGGTGCTATGGTGACGATCTGTTGGTGTTTGGgattaaagaaatacaatgaaGGAATCAAAGTCAtgtcgctcacacacacagtacaatatTAAACATCAGAGGCTGTTTTCACACACATTTCATCTCATTTCATAAGAATGGTTTGTTTTTGTAGTTTAGGACTTTACTTATTGTGTAATGATGGATTTTGCTTACTTTTGTAATTAATGCTTTTTCCTATTTCATGAAATCCAGTTCAGCCCAAAGATTTGAGACAAAAGCGAAACCGTTTAAGAACATTGAAGGAAATGTTGaagcggtctgaaccggcccgtctcagctcgactcaaaccagctgatggtgttgCTGTgactcagctggtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91621 lncRNA upstream 53879 42385954 ~ 42396402 (+) True G68506
TU91598 lncRNA upstream 118635 42278980 ~ 42331646 (+) True G68495
TU91594 lncRNA upstream 198674 42249911 ~ 42251607 (+) True G68491
TU91183 lncRNA upstream 238708 42189494 ~ 42211573 (+) True G68260
TU91636 lncRNA downstream 45005 42535267 ~ 42536646 (+) True G68512
TU91637 lncRNA downstream 45005 42535267 ~ 42536128 (+) False G68512
TU91534 lncRNA downstream 79250 42569512 ~ 42607617 (+) True G68461
TU91663 lncRNA downstream 153594 42643856 ~ 42644077 (+) True G68537
TU91671 lncRNA downstream 192032 42682294 ~ 42698899 (+) False G68544
XM_039804063.1 mRNA upstream 14681 42425703 ~ 42435600 (+) True LOC120561112
XM_039802462.1 mRNA upstream 30175 42322474 ~ 42420106 (+) False LOC120560201
XM_039802522.1 mRNA upstream 38305 42374134 ~ 42411976 (+) True LOC120560243
XM_039802463.1 mRNA upstream 94927 42322588 ~ 42355354 (+) True LOC120560201
XM_039802435.1 mRNA upstream 209352 42218162 ~ 42240929 (+) True LOC120560192
XM_039802452.1 mRNA downstream 5023 42495285 ~ 42534878 (+) True ccdc180
XM_039802454.1 mRNA downstream 5023 42495285 ~ 42534878 (+) False ccdc180
XM_039802453.1 mRNA downstream 5023 42495285 ~ 42534877 (+) False ccdc180
XM_039802455.1 mRNA downstream 5023 42495285 ~ 42534877 (+) False ccdc180
XM_039802440.1 mRNA downstream 60011 42550273 ~ 42643061 (+) False LOC120560195
TU91611 other upstream 53638 42322473 ~ 42396643 (+) True G68504
TU91472 other upstream 444320 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 515965 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 515965 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 694153 41721013 ~ 41756128 (+) False aebp1b
TU91750 other downstream 473778 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 485884 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 503516 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 535036 43025298 ~ 43031225 (+) False entr1
TU91794 other downstream 546075 43036337 ~ 43162404 (+) True G68626

Expression Profile