RNA id: XM_039802522.1


Basic Information

Item Value
RNA id XM_039802522.1
length 603
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120560243
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42374134 ~ 42411976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagatatgCAGTGCTTTTATTTAGTTGTttcatgttcacacacacagttaagaAAAATGATGTATCGGTCCAAGCAACAGATCCAACCTGAGGACAGCACATGTGAGGatcagagcagagagcagacagaCGGGAAGACGGACGCAGAGAGACCCTCCACCTGGACATGGACCacctgatgctgctgctgctgctgtggagcTCAGGACTCCAGGCTGAAGGAGAACTCAACTCAACAgAGTCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTAGAGGAACACTGGAGGTGAAACATGAAGGAGAATGGAGACCATTGGATTACTCTGTCTGGACCCTGAAGACAGCAGCTGCTGCCTGCAGAGAGTCAGACTGTGGCTCTGCTGTTTCTGTAGTAGAGAGAGAAGAGTCCTCCTACAGATCTGTGTGGGGGATCTGGTCTGACTGTGTTGAGTCTGGATCTGCTGTGAGGGAGTGTGCTGCATCAGGTTCCTCTTACACCGTCCTTCATCTCACCTGCTCAGATCATGGGTAGATGCTAGATCACACCTGATACACGTgtcaacatcaacacacagcATCCTGTTCAGGCGTCAACACTTC

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko03440 Homologous recombination
ko01524 Platinum drug resistance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91598 lncRNA upstream 42488 42278980 ~ 42331646 (+) True G68495
TU91594 lncRNA upstream 122527 42249911 ~ 42251607 (+) True G68491
TU91183 lncRNA upstream 162561 42189494 ~ 42211573 (+) True G68260
TU91187 lncRNA upstream 163330 42208679 ~ 42210804 (+) True G68264
TU91186 lncRNA upstream 196376 42175818 ~ 42177758 (+) True G68263
TU91636 lncRNA downstream 123291 42535267 ~ 42536646 (+) True G68512
TU91637 lncRNA downstream 123291 42535267 ~ 42536128 (+) False G68512
TU91534 lncRNA downstream 157536 42569512 ~ 42607617 (+) True G68461
TU91663 lncRNA downstream 231880 42643856 ~ 42644077 (+) True G68537
TU91671 lncRNA downstream 270318 42682294 ~ 42698899 (+) False G68544
XM_039802463.1 mRNA upstream 18780 42322588 ~ 42355354 (+) True LOC120560201
XM_039802435.1 mRNA upstream 133205 42218162 ~ 42240929 (+) True LOC120560192
XM_039802436.1 mRNA upstream 133205 42218162 ~ 42240929 (+) False LOC120560192
XM_039802437.1 mRNA upstream 133205 42218162 ~ 42240929 (+) False LOC120560192
XM_039802512.1 mRNA upstream 215186 42150631 ~ 42158948 (+) True LOC120560233
XM_039804063.1 mRNA downstream 13727 42425703 ~ 42435600 (+) True LOC120561112
XM_039802474.1 mRNA downstream 38305 42450281 ~ 42490262 (+) True LOC120560205
XM_039802473.1 mRNA downstream 38524 42450500 ~ 42490262 (+) False LOC120560205
XM_039802452.1 mRNA downstream 83309 42495285 ~ 42534878 (+) True ccdc180
XM_039802454.1 mRNA downstream 83309 42495285 ~ 42534878 (+) False ccdc180
TU91472 other upstream 368173 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 439818 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 439818 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 618006 41721013 ~ 41756128 (+) False aebp1b
TU91319 other upstream 973561 41366584 ~ 41400573 (+) False G68349
TU91750 other downstream 552064 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 564170 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 581802 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 613322 43025298 ~ 43031225 (+) False entr1
TU91794 other downstream 624361 43036337 ~ 43162404 (+) True G68626

Expression Profile