RNA id: TU91186


Basic Information

Item Value
RNA id TU91186
length 1821
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G68263
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42175818 ~ 42177758 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCAGAGACAGCAAGTCGTTTCTTCGCTGAAATGCCTCTCAAATTTGCACGAACACCAAACATGTCTGTCATTCCCATTTCTGACAGCACATCGTTGAGGTTGTAGGAAGTCTTGATGGAGAACTTTggaatatatacattatatctCCTAAAACATTTGGGGAGGGGAGACAAACATTCAGTGAATCTGACTAGGGCATGAGATTCATTTGGATATGAGGGCCTTAAACAAAGATGCCGTTTTTAAAAATCACTGACAGACTCAATTtctttaagtgtctgacaacattatgggatggatccctacagagatacaccttttagttaaagagaaagatccttttagtttaacatgaaacagccccaaaatcaccatcaccaaactccatgtaaataatcaggacttttatcatgtatagagccagcatatttccacacgtaaaagggtttatttcaaccaaaccagagtgaaAAAGGtttctctgtagggatcctttcctcctgcattaaaaacaaacaaaaaaaagaacaggacAAAGCTGGGTACCTTATTCCATGTCAAACCTTCCACATATTAGAAGCATAAATTAATATTCTCCCTACCTGGGTTTCATTATAGTTGTAGTCAACCATTCGGTGACGTGGTTCGGGCAGATGCCGTTTTCCAGCGTTACCATGACGTCAGGCAACATCAGCAGCATGGAGTAGGAGCTGGTGAAGGAGAGCCGAAGGACCGTAGTCTTCAACTTGTCGTCataataaatgtagaaatgatCCTCCAAATTCATCATGAAGACTGGAACCTGGACAATGACAATTTAAACATGGACACAGAATGAACAATGCTTAGTATAAAGTGTGTACAGTTTGTAGTATACAGTGTGTAGAATAAAttgtataaagtatatatagtgtatacagTGTGTAGTACAAAGCATGTAGTATAAAGTGTGTACAATGTGTAGTACGATGCAAAAcgattgaaaaaaactgaacaAATTAGGGTGTTACAACTATCAGGTTTTCCAAACTTGTGTTAACGGCATGAAAAATACTTCCCAACGGACCCCTGCTGTAGGTTTGGGCTGAATCCCGAATGTTTACAATGTCTGTCTGCGCCACCTTTGTGTTCTTGTCCACGTTGAAGTCGTCCTGCTCGGTGAGTTCAGGGTCAAACGGAGTTGCCCACTTTCTTTGTAGTAGATGTAGCTGATGAGATACATgactgtgtttggatccaggtTTTCCACCAGCTGGTCAATCTTCCCATTGGTCTTCTCAGTCACATAATTATTGATGGTATCAGCACTTTCTGTGGCTTGGCTGAAGTCCACATTGAACCCATCGGCAAAGTACGACCGCTTCAGGGTCTGCAGGAACTTTGGTTTCGGCTTGAAGCGGTTGTCCACGAACACAGCTGTCCCTTCGCTGGCGTCCTCCTGAGAGGAGTTGTTGGCCATCTGAAGGAATGTCTGGAAGGCCTGGTCCACATCTGTCTGCGTCAGGGAGCTTTTGAAGCCCAGACCACTGAAAAGCTGACGGTGAGTCTGCCCCTGCGCTCCCACGGACAACGCAGCCAAGGCGGTTGACACACTGAATGGGGAGAAGAAGATATTCTTTCCCTGAGAGTCAGCATGAGCTGCCAACTTCCTGTAGAGTCGGAAGGAAAACTCTTTGTTTGCTTCGTTCACCAGGGAGACGCTGTTGGCGCAGATCACCACTGATAGGACCCAGAGACCCACGGCTGCACGCATCATCATTGTGAACTAAGACAAAATTTCAGAAGTTCAGCTTCATTGTTTTAATGACAGTGTACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91582 lncRNA upstream 1852 42162738 ~ 42173966 (+) True G68486
TU91516 lncRNA upstream 35754 42039864 ~ 42140064 (+) False G68451
TU91566 lncRNA upstream 46749 42126824 ~ 42129069 (+) False G68479
TU91563 lncRNA upstream 47817 42121769 ~ 42128001 (+) True G68479
TU91567 lncRNA upstream 48082 42122225 ~ 42127736 (+) False G68479
TU91183 lncRNA downstream 11736 42189494 ~ 42211573 (+) True G68260
TU91187 lncRNA downstream 30921 42208679 ~ 42210804 (+) True G68264
TU91594 lncRNA downstream 72153 42249911 ~ 42251607 (+) True G68491
TU91598 lncRNA downstream 101222 42278980 ~ 42331646 (+) True G68495
TU91622 lncRNA downstream 177739 42355497 ~ 42492253 (+) True G68507
XM_039802512.1 mRNA upstream 16870 42150631 ~ 42158948 (+) True LOC120560233
XM_039802517.1 mRNA upstream 28363 42140583 ~ 42147455 (+) True LOC120560236
XM_039804061.1 mRNA upstream 105105 42053421 ~ 42070713 (+) True LOC120561109
XM_039804058.1 mRNA upstream 237528 41932857 ~ 41938290 (+) False LOC120561105
XM_039802450.1 mRNA upstream 243622 41889339 ~ 41932196 (+) True npc1l1
XM_039802435.1 mRNA downstream 40404 42218162 ~ 42240929 (+) True LOC120560192
XM_039802436.1 mRNA downstream 40404 42218162 ~ 42240929 (+) False LOC120560192
XM_039802437.1 mRNA downstream 40404 42218162 ~ 42240929 (+) False LOC120560192
XM_039802462.1 mRNA downstream 144716 42322474 ~ 42420106 (+) False LOC120560201
XM_039802463.1 mRNA downstream 144830 42322588 ~ 42355354 (+) True LOC120560201
TU91472 other upstream 169857 41909824 ~ 42005961 (+) True G68429
TU91474 other upstream 241502 41932563 ~ 41934316 (+) False LOC120561105
TU91478 other upstream 241502 41932563 ~ 41934316 (+) False LOC120561105
TU91431 other upstream 419690 41721013 ~ 41756128 (+) False aebp1b
TU91319 other upstream 775245 41366584 ~ 41400573 (+) False G68349
TU91611 other downstream 144715 42322473 ~ 42396643 (+) True G68504
TU91750 other downstream 786282 42964040 ~ 42965620 (+) False G68598
TU91748 other downstream 798388 42976146 ~ 42998262 (+) True LOC120561116
TU91740 other downstream 816020 42993778 ~ 42998262 (+) False LOC120561116
TU91783 other downstream 847540 43025298 ~ 43031225 (+) False entr1

Expression Profile