G411394


Basic Information

Item Value
gene id G411394
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 11087144 ~ 11107151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU488304
ttttttttttcatacaaagGGCCTTCAAGCCCCTGCAGTCGTCACCTACACCTAGTGCTTCATGTTCAGAAAGAACAATGAGGTTTAATATAATATGTGTGCCATAATTAAACCTCACCTACCATTAATCCAAATGGTAAATTGGAGCAGGGCAAAGATTAGGCAGGTCATTATTCACCAGAGTCTGTGTGGGAATGgtacttttaataaaaacattcccTAGAAGGCTACTGAGTATTCCAAAGAAGactttccttttcttctgtCACGGAGAGGAACAACTGATTATAAttgcttttctgtttcatgCTGTTAATTAAAAGTAGCTCGTAACACCTCAGGGCAAGGACATGCAAGACTCCAccattttaaatgctaaattcTACATGCTATTTCATCATGAACGTTCAGAGCAACATAGTAatgtaagcaaaaaaaaaaagtgacctaACAAGTAAGCATCAGGTCGAGCaacagaaaagaaacacaaactaAATACGAACATCCGTACATCCATTCGTTTACATTTACAACTTTAAAGCTGAAGTCtataccaggaacactgggcatgaggcaggaatacactctcagaacactccaaccttcacacaccatgtcttcctggagctcgctttgtgcacaggggcattatcatgctggaacaggtttgggcctcttagttccagtcatacaaagacattctagtcTACAAAGACaatgtgtgcttccagcttcatggaaaaagtttggggaaggcccacatatgggtgtgctgGTCAGGGGTgcgcatacttttggccatacagtgttcTCTCATTTGCCCAGTCAATGCTGACCTAATGATTGCATCAAGAAGCACATCACCCAGCTACAATGTCATTAGACTTGCAGCTCATTTCCCTGCTTAGCATTAAGGACAGCTGCTGAAGAACAGTGTGAAGGCCACTAATGATGGCACTCTCCAGTTAATGACCTGGGCTATCCAGGCAGAAGCAGGAATCACAGACACTCAGCTCACAGCAGCCTGCTCCATGGAGGGCAAACGGGTGACCTGACTCCTCTGTGTGGTTCACTACAAGCCATTTCTGCAACTGTCAGACTGTTAGTACTGTACTGTAGATGAATTACAGAACTGCCTGTGATTTTGTTCTGACAACACAGACTTTACAACCATCTGCAGcggttaaataaaaaaatcttagatGTGGATGTTAGAGAAATTAAGCTGGCTATGAAACCCTAAAATCactaaaatctttatttttagttCAGCTGCATATGCAATCAccatatcatttaaaaaagcattataTACAGCGCACTGAACAACAATAGTGTTTTTCTAATCACCTCCTTTCTCTCTTCACAGTCGCAAGCAAAATGTTCTGCGTTCTTCAGAACTGTCTGTTCTGGAGAGGAGAAGTGGCTGCTTCATTCATCCACTCGCTGCAGCTGCTTCTCGACTCAACTACAACCCCATCTACTCGCCAAGCAACTGTTGCCACCAACTCTCCATAGCTCAAGTCACCATCTGTTCTACCACTGAatggaaaattggaaaaaagagagagaggtaatgaCAGGAAGTGTGAGTAAAAATGCTGGGTAAAGAACACGCATACTCCGCTTTGCTACCTGAATGTCTCCTTCTCATCcttttttcacacaattcatTGCCACAAAGGGGTAAAAAAACAATATCAACATGATGCTCAAgcttagttcttttttttttttttttttttttttagaaataacaTGGAGTATGGGTAGACTTCCATTTTAAACAACATTAGGAGCAGCAGTGTGCCTCCTAGTCCGAGACACTTTAACtctataaaaagtaaaaaacaatgCTATTTCGTAATCCAATAAAAGACTCATTCACTTCAAGCTTTTTTCAATAACAAACTGCATGTGAATAAGACATGATGAAATCAGAATAGGCCGAAGCAGGTAAGACGAGCACCCTTCAACTAAAACTGTGGCTTAGACAACAATGGAGAGGAAACCCAGGCGAAGAACTGTGGATTGTCACTCCAGAGCCATTCGCTTTCAGTACCAACGTCTTTTCCTGCACACAAAAATGCACTCATGCACATTCCAAATGCCTTTCAACAGGAAGTGTCCTAGTCTGCAGTGTAAAGTGTGCGAGTCATTTGCATGGTTCAGAGAAGAGGAAGTGAAAGCCGCTCAGTCCATAGGAGAAAAAAGGCAGGGTGAGTTTCTGTTCAGGCCGTGTCGCCTCACCTTGCCTCACTGCTTTCCATGTGTTTTGACTATAGACACATGCCACCCACCACAGCCCCTGCCCAACAGGAAGCAGCCGCTCACAGAGCCTTGCTATTCACATTCAAATGAAGCTGTTATCAGGAAGCCAGTATTGGCAGAAAAGTggaaaggggagagagagagagagagagagagagagaggcagcgagagagaagaagaagaagaagaaggagaagaagaacagaGAAAGTCTTTTAACCCATTTTTAGAGCCTGACACAGTGTGGCGTGTGCCATGACACCCCCACGCCAACAGAGAGCTCCTTAGTGCGCACACTTCCTGTTCCCCAGTCACTTGTTGTTTATGGACTATATAAGGACACCTTCATACACAAAATTACTGGGTGATCTTGCCAATACTTCCCGTCTGTTCTGAGCCATTGTTTCCTGTGTGCTGTCCCTGAGTATGACCCCTTGCTTCTTTCAATGCAATGTTCAACCCTGTTTGCAagctctccctctgtgtgttcCAGGGATATCGACAAAATAAGAATGGCACTATCATTACTCACTGGAAAAACTGTGTGTGATGCTCTTATCTAACAATCCTGTCCACACTTTGAGAGTGAATTTTGGAAAGTCTTTTATTGTCCAGCGATAAAAGGACTGGGAAGGGAACGGTCCTGAGGAAAGATCAGCCAAAAACATTCTGAATGATTCGCTTATTGCTGACTTTCATCGAAAACGTCCAGACTGGCACTCTCCCAGACCCATGAGAAGGTCAAGTCACAGGGGTGGATCGGTGGTTCCAAGTCGAAATCATTCATGCACTAACTCgctgcgaagtcttgccaatatTTCCACTGAGTAAGTTCTAATCCTTTGTTTAATGTCTGATATCCCCAAATTCCCAAAAGATATCTGAAATTTCCATCGTTATATTCCTGTGTATGACCTTTGCTTCATTTGTGACTTCCCTGTTGGTTTTGCTCCTTGTTTGATGAGTATCTGGATTCTTTGTGCTTTGTCTCCCTGTCTGATTCACGAcactgttttggatttgttacCGCTGATTCATTAAACCTCCAGCACATGGAGCCTAAACTTTCTCCTGAGTCTCTGTCATTAAATGCATACACCTGTCACAAGctctagtgatttttttttttaacatagtccCCTAAACAACTACAATATACTGAAGTGATATATGAGTGCAATACACATGGTTGCTTTGTGCatatgtgcacatgtgtgttagtttgaaaaagcatgtcatttgtgtgtgtgtgtgtgtgggatgtgttCCATTGCCTAGCAAACACCTGCAAACactcaactgctgttgtttagACGGAGACAAGTGAGGGTAAATTTAGCAGCGGATTTTTTGTCTGGTGCTGCCACATGTGCCAGTCACCATGAACGCCGCTTTGTTGAACCAACCACATCAATTTCCTATTTGCTTCAGCTGAAGGTACTGCCATGTCACAGAGATTTATATATATCGAGGGcaataataaaaattctaaCCATAATGAATCAGtttggatggagagagagagagagagagagagagagagagagactggctGGAGGACTTCACCTGTATACCCAGCACTGATGGTCACATGATCGCTCACTCTCACCTAGCATTGTCAGACCACAGTTTTTATTCATCCAGTCACACAGTTATTCACTCCAgctatgtctctgtctctcgtcttccttctccttttcctctctcttagCTCAGCTCTACTAGTGAGGCTTTTCACTCCACCTGATTCCATCAAGGACAAAGCACAGTTTCTGAGATGGTTCCCATAGAAACAGAGTATGCCTTGCTACTTTAGTCAGGTTTTGTGCATCGTATATGCCGGAGTGGCCGCACGAAAAACAAGAACTGACCAACAGCACACATCAATAAGAAGGTCTGGAATCCCTGCAGCAGTTCAGAAGGCCTTCCACTCGTGCCCCGGGTTTACTGTGACCATCTTTTTTCATCATGCATGAAATGTTTTCCTGAATTTTCAGCCAAATTCATCTTATCTTCTTTCTAAAGAGCTAAGAGGCACTTGAATCTTCAAGCTCAAAAGTTTCAACTGTATCAGACATATCCACATTATCTAAACTTTGGCGCTGTTTTAggactttttaaaagaaaagtgtacacacagacacagacatagaCATCCACTCTAGTCCAGAGACACATCATTCTCAAGAGCTGCTCTTGGCAATTCTGACCTTTCACCCCTAAGTGAAATTAAACCTGAGTGCAAAGTGCAACACCCATCAACGTACACACCCAGACAAAAACATAACCCTTCTCTGAACAGGCTCTTCTAGAGAAGTACGATCCCTTACACTGTTCATGTAGTCATTTATCTTCAGCAAGTGCTTTTGGAACCTATGACTGGAACACTGGCTGGGAaagccagtccatcacaaggcaccacacacacacacacacacacacacacacacacacaaaatcaaacactcgttcacacctaggggtaatttagagtagCAAATCCATGTGCCAGCATGTTTTCGGGAAGAAACCTGAACAGTGAGGAGAAGtaaccctgagctcaggatcgaagtGGAGAGCAAGAAGGCAGTGACATTACCCACTTCCCCACCGTGCCATTCTCTTTTCCACTATCACAACCTATAATAGCATTATTGTAggtatttatattaataactaCAACAAGTTTATAACAATAGCACTTTACATTAGATATGCCACTGTGATGCTGTGCTGAGGAACACCTCCATGTCCAGTATTTCTCAGGTGCTAAGCTCTGAAGAATGAAAAATGCTTGACTAGCATTTGCAGACTGAATTTTTGAGAAAAGAATTCCTTTAATGCTGGCCCAAGTGAATCTTAGCCATAATGAATATTTACATGTGTGTCGGCTTTACAAACTCgagtctcactctcactgctgctggtTTCAATTTCACCACTTGCACTTCCAATGTCAAGAGAGACTGCGAGAAGGATTGTAAGGACGTAACAATTACCAACAAGTCATACAGTCATGTGTACACACTTTAAATGTTGTGCTCCTGTTCTCCTGCGCATTTCACAGTCTTTAATTGGCTCTGCTCTGCCTGTAAACTAGTAGGTTAATTAGCCGCTAACAAAATGATTTTAACACTGACATTCATAATCTGTTTACAAAATAAGAAACAATTAAGTACAGTACAAATGCTTACACAGGTTGTGCTCAGTTAATTGAGTCAGACATTCTCAATAATCCTGCAGTCTGTTAGAAAGCTAATGATTTGCCACATAGCTGTTAGCTGACAGTTAGATTGCTAACATCCTTGCTAATGACTTAGGTGTGGTTACAACCAGCGACATGGAATTGGCAATATGGTGCTGCTCTTGACCCTggatatttattttcaaataaaaaataatctcaaAGGAGACACTCTGACATGGAATCATATTCTCGAAACAAACACTggggtttatttgttttttcacaggctttgtaatatatatatatatatatatatatatagttttcattttaatgccAAAGGTATTTCCAAATGATGTTATTATGAGACTTTAAACAAATCCTGGCACAGTGACAAACTCCTGCATTTTGTAAGTGTCACACATTTCATGCAGGGCCGTGAAGGTGAGTGGAGCTCAGTGTGCCACATAAATCTGCCTCCATCGACCAGTCACTGAACTTCAGGCACGGAAGTGATTTTCTGTAGgtattagcacacacacacacacacacacacacacacacacacacacagagagaggcacAGGGGAGGCCACTGGCAGCCTCAGCTGCCTTTTATGAAAACAGCAGGACCAGCATGcattgctccaatcagcagagAGCAGCATCACGTCCAGCAGAAAGAGAATAGGGGTGGACAGATCACAAGCCTGGGATCCCAGGACAAGCACATTTTGTGTTCGGGCAATTAGTAtttcacgtttttttttcccacagttGCCAAGCAGACAAGTAGCTTAAACAAccagaaaaaacacacttccTATTGACCTTCCCAATACAAAAAGCTTCATTCgatttgtatgtatatttaaacGCAATGCGTAATGCATCATGGCGGTGTGGTGCTCCTCAATGCCGTACCTATTCGAGCTTCGATGCCTGCTACTTTATTCACATCAGCGACACGATCTTGCTGACGGTAGGACTATGATAATTACAGAATGACAGATGCGTCAGGAGcatgcaggtatgtggaaaTACTGACAAAAAACTAGCAAAATAAAGCCGGCTcatttcccttagtctgtattaatgcacttcacTAACTAAATTACCATACGTTATGatgttacattagctaccactttttccTTCCAACCAGAACATAGGACTGAGCAACACACCAAAGTTTTcactagctaataaatttatgatttgtccacttgtgaagaaatacaaaaatgtaagtttccatatttgttttttgaGCAATTCTAAGATCCAGTGAGATATGCTAATGTTTGCTGACTGTCAGAATTGAACTTAGGATGCTTTAGTGAATAAATGCAAAAGCAAATTGGAAAAAGCTCAATGGTTTGTTTGTTCCTGTGCCTTTGTGCATTTGGTGTAACTGTCAGCATTTCTTGTGGCCTGGACCAAGGCTAGTCACCCACACACCATTGCTACTGTCACATGCATGCTATGTGTTCAAACATGCAGACACACCACCCTATATATCACAACAacctgccctctctctctctctctctctcacacacacacacacacacacaggggttaAAGTGAGCACCCCAGTAACTTGGAGAGGGTAAAAATGTGAGTTTTCAGGTTTTACCTGTGGCATGATGGTAGGAATCAAACTCGCGTCACAGAAACAATAAGGTCCAATCGTGTTTCACAGGACGAAAGTAAGAGCCAATCATATTTTCGAGATGTATTCTCAAAATCATTTCAGATCaagttgattttttaaaaagtgcaagtGATATAACTGCCCATGTTCATCTTATCTAACTTGTAATGATATGTGAAATTAATGCCAATTATATAAAACTAGCGAAccagttttataaaatatataaaagtcgtgaactagcatgaggatgtgtttctgatcgagactcCAAACCTcttctataagtcactctggataagggcttcTGCTAAACGCtggaaaagcaataaaaataaataaaaaataatttaacctCCAaagtatattccagatataaaagtgcagtaatcgaTTGtgaattatatgatttgaagtctaTCAAGTCTATGTTTATATTAGTTGgccttcttatgtgtaaatttaattGACCTTCATGAAAGCCAAATTTCTTGTGTTAATACTCATACGAATGATTTACTAATAAATCCGTTCCTATCCAGCTTAATAAAGGAGACCCATTGTGTCCAAACTCATGTGTGAGATCCAACTGAAACTGCAAGCTCCTCCCTGATCTCTGTTCCACCACCTTTCAAATTCCACTTtaacccctacacacacacacacacacacacacacacagccttaggATGTGTCTGAGTTTCCAGTACAGACATTATAAAGCCTGAGCAGCAGAAGCTGTCAAATTACTCACTGGAATTAAAATCCCTCCTTTCATTCCACACCcagtttttatgctttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU488304 True 7924 lncRNA 0.41 2 11087144 11107151

Neighbor

gene id symbol gene type direction distance location
coq8aa coq8a,adck3,LOC107716623,LOC107727627,LOC107602173 coding upstream 70365 10989682 ~ 11016779 (+)
stum stum,si:dkeyp-59a8.4,LOC107602214,LOC107675050,LOC107598101,LOC106607833 coding upstream 137576 10933331 ~ 10949568 (+)
LOC117596571 NA coding upstream 158228 10917104 ~ 10928916 (+)
slc30a2 slc30a3,slc30a2 coding upstream 219378 10848227 ~ 10867766 (+)
dusp10 dusp10 coding upstream 276075 10792067 ~ 10811069 (+)
pex3 pex3,LOC107727657,LOC107689441,LOC107716471,LOC107675099 coding downstream 61624 11168775 ~ 11177446 (+)
atf3 atf3,LOC107727668,LOC107553464 coding downstream 80347 11187498 ~ 11191610 (+)
flvcr1 flvcr1,LOC106512207 coding downstream 117149 11224300 ~ 11232036 (+)
galnt14 galnt14,LOC108274857,LOC108429358,LOC107676246,LOC107716567,LOC107727639 coding downstream 129109 11236260 ~ 11259403 (+)
angel2 angel2 coding downstream 154927 11262078 ~ 11271041 (+)
G411398 NA non-coding upstream 321 11077725 ~ 11086823 (+)
G411395 NA non-coding upstream 12834 11069971 ~ 11074310 (+)
LOC113529302 NA non-coding upstream 18289 11065694 ~ 11068855 (+)
G411304 LOC108259151 non-coding upstream 191109 10894093 ~ 10896035 (+)
LOC117596550 NA non-coding upstream 244757 10840642 ~ 10842387 (+)
G411414 NA non-coding downstream 47428 11154579 ~ 11154794 (+)
G411423 NA non-coding downstream 60530 11167681 ~ 11167890 (+)
G411427 NA non-coding downstream 71151 11178302 ~ 11179406 (+)
G411438 NA non-coding downstream 96975 11204126 ~ 11205628 (+)
G411667 NA non-coding downstream 206232 11313383 ~ 11313598 (+)
G411297 NA other upstream 322415 10764214 ~ 10764729 (+)
armc2 armc2 other upstream 791939 10235981 ~ 10295205 (+)
afg1lb lace1 other upstream 856337 10197716 ~ 10230807 (+)
G410936 snx3 other upstream 904472 10178049 ~ 10182672 (+)
LOC113529148 NA other upstream 1982920 9098377 ~ 9104224 (+)
aig1 aig1,LOC107675100,LOC107689442,LOC106607822 other downstream 8422 11115573 ~ 11153005 (+)
txlnba txlnb other downstream 283349 11390500 ~ 11418204 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G152776 NA non-coding CI01000029 null 1187612 ~ 1189153 (-)