AMCG00004648


Basic Information

Item Value
gene id AMCG00004648
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55682452 ~ 55684986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004648
GAGGTCTCTATAAAATGCAGGATAAATTACAAGGAATTGGTCAAATCAGAATTTGGAGCAGTGCAAGCTTACAACGCCCTTCCTGGTGAATGCTTGAAGTTAGATGACAAATACACAAGACTCCTGATCATACAGAAGCACCGTcatcagaaagagagagaggaagagctGTGTTGCAGTGGCAAGACACATCAAGAAGTCATGGACCAGAGGGACAGTTGTGATTTCATGAGCACAACTGTGGAAAACCTGTTTAATTTGGATGAGTGTGCAAAGATCCAGAGAACGGTGATATTGCAAGGTCAAGCAGGCATTGGAAAATCTTTCACGGTGCAGAAAATCATGTCCGATTGGGCTTCTGGAAAGCATTATTGCAAGCAATTTGAATATGTCTTTCACCTGAAGTGCCAGCAACTTAATCTCATCAGAAAGCAGGTAAGTGTTGTAGACCTGATTCTAAGCAACTCTGAAGACTTGAAGCCAGTGATCCTGGAAATCCTGTCCCAGCCAGAGAAGATCCTGTTCATCATAGATGGGTTTGATGAAATAAAATTCTCACTGCATATCGGAGAAGATTCCCTTTGTCCCAATCCCCACCAACAGAGCTCGCTCGAAGTCACACTGAGCAGCCTTATCAGGAAAGTGGTCTTGTCCAAGTCATTCTTGCTCATCACTACGAGGTCTACTGCTCTAGAAAAGCTGAAGAAGGTTTTGAAACAACCTCGTTACACAGAAATCCTTGGTTTTTCAGAAAAGGGGATCaaagaatactttcaaaagtTTTTTAAGGATGAACACCAAGCAATGCGTGCCTTTActtatataaaagaaaatgacattgtTTACACAGCGTGCTTTATTCCGGTAGTGTGCTGGATTGTCTGCACGGTTTTGATGCAACAGTTTGAAGAAGGCACCAACATAACTCATGTCTTGAACACCAAAACcacaatatttatatactttgtGTACACTTTGCATGAATATCATTCAAAGGATGTTAGACTGCCAGTGCAGGACATCCTGAAACAGCTAGGCATTTTGGCAGAGAATGGTGTCAAGGAGCAACAGGTATTGTTTGCAGAAAAGCAAGTAAAAGAGATTTTTATGGATTCTTGTCACTTCCCatcttgctttttaaataagatCTTACTCAAGAAGGGCATTTTTAACCAGACTGTATACAGCTTCATGCACCTCAGCTTCCAGGAATTCTTTGCAGCCTTCTCATATGTTCTGTGTCAGGACGAGGAGGCCAAGAGGAAGGTGACAGAGCTCTTAAAGGACAGCCAAGACTATAGCAAAAGACACTTGCTCTCAACTGTCCAGTTCCTCTTCGGGCTTTCAAATGATGAAACAAGGCAGTTCATGGAGGAAAAATACAACCACTGCATTTCGTCAGAGATTCGATCACAGCTGAAGGAATGGATTCAGAAAGTGGGCAGCACCTATAAACCAGGATCGGATTTGCTCACCATTCTGTACTGTTTGTATGAGTTTCAGGACTGTGACTTTGTCAGAAGCGCAATGGAGAACTTCAGAGCAATATTCCTTCAGACTTTCCCATTAAAGAGAACTGATTGTGCCGTCCTGTCTTACTGTCTTCAGGCCTCCAGAGGCATTAAGATCCTTGATCTAAGTAACTGTAATCTAaacctggaggagctggaaATTCTGCTGCCAGAGCTGCATAAGTGTATTAATCTGAGGTTACACTTTAACAATCTGGGAGATGAAGGAGTTAAACTCTTGACTAAAGCCCTGAAGTCCTCTGGTTGTAAGATAACGAAACTTGGGTTGTGGAAGACTGGCCTGACAGAGGCCTGTGTCAATGACCTGTGCTTGGCTCTCAAAAAAGGGCAGTCAGTCACACAACTTTATTTAGATGGAAATGGATTCACAGATGCATCAATACCTGGTTTACTTTCCCTTATCCAGAAATGCGACAAACTGGATCGTTTT

Function

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004648 True 1962 mRNA 0.42 3 55682452 55684986

Neighbor

gene id symbol gene type direction distance location
AMCG00004641 NA coding downstream 53469 55614612 ~ 55628983 (-)
AMCG00004637 NA coding downstream 219726 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 346219 55314396 ~ 55336233 (-)
AMCG00004631 NA coding downstream 368681 55311400 ~ 55313771 (-)
AMCG00004630 NA coding downstream 389428 55272343 ~ 55293024 (-)
AMCG00004654 NA coding upstream 183661 55868647 ~ 55870960 (-)
AMCG00004663 NA coding upstream 408123 56093109 ~ 56096391 (-)
AMCG00004664 NA coding upstream 428419 56113405 ~ 56115924 (-)
AMCG00004662 NA coding upstream 462501 56147487 ~ 56162331 (-)
AMCG00004671 NA coding upstream 500231 56185217 ~ 56212864 (-)
G9661 NA non-coding downstream 75036 55606927 ~ 55607416 (-)
G9650 NA non-coding downstream 76877 55585048 ~ 55605575 (-)
G9656 NA non-coding downstream 97457 55578276 ~ 55584995 (-)
G9643 NA non-coding downstream 123144 55553824 ~ 55559308 (-)
G9593 NA non-coding downstream 324819 55346783 ~ 55357633 (-)
G9698 NA non-coding upstream 33151 55718137 ~ 55718729 (-)
G9700 NA non-coding upstream 34978 55719964 ~ 55720217 (-)
G9701 NA non-coding upstream 36720 55721706 ~ 55722013 (-)
G9719 NA non-coding upstream 94439 55779425 ~ 55780607 (-)
G9751 NA non-coding upstream 212870 55897856 ~ 55898062 (-)
AMCG00004640 NA other downstream 131227 55529650 ~ 55551225 (-)
G9604 NA other downstream 262394 55367585 ~ 55420058 (-)
G9608 NA other downstream 293513 55382216 ~ 55388939 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 762514 54915584 ~ 54919938 (-)
G9414 NA other downstream 1062397 54576640 ~ 54620055 (-)
AMCG00004649 NA other upstream 52579 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 129416 55814402 ~ 55846171 (-)
AMCG00004652 NA other upstream 204996 55889982 ~ 55894086 (-)
AMCG00004660 LOC106605085 other upstream 321065 56006051 ~ 56008866 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 421727 56106713 ~ 56109085 (-)

Expression


Co-expression Network