AMCG00004652


Basic Information

Item Value
gene id AMCG00004652
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55889982 ~ 55894086 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004652
AATGCAGCCTCTCACGGTGTCAGCGCAAACTGCAGCTCCCTGACCGCAGACACCGAGCGCCTTCAGGCGCAGAACTCACGCCACCGCCAGGTCCTCACCCAGCTCCTCACAAACCTCCCCTCTCTGGAGAAATACTGTCCTGTCCGAGATTCAGAGTCACAGGAGAGAGTTTGCCAGCCGTGCCCACAGGGCTGGCAGTCATTCAACTCCAAGTGTTACTACTTCTCTACCGAGAGACAGCGCTGGAATGACAGTCAGGCTGCATGCAGAGACCAGGGAGCTAACCTGGAGTTCATCTGGAGACAGAGTATAAAGGCCTCCTGGCATTACTGGATTGGACTGACTGGCGCAGTGAAATGCAAAGCCTGGCTTTGGGTAGATGGCAGTAGCCTAAATGTACAGTACTGGGCCCCTGGAGAGCCGAATGACATCAGGGGAAAGGAGGAGTGTGTGGCCACTGCTGTTATTCTCAATCCTCTTCATAACTGGGTGGATCTGATTTGCAGCCAAGTGCATCGCTGGATCTGTGAAGGCAACCGCCTGCAGCTCACAGCCTAGGTGCCGTGATCTGGTTACACTGTGGCTGCGTTTCAGTAtcagtgtatacacacacattttaaaattctcaCTAGCAATCAAATTATAAGATCATGTTCATGttaattttttaaatgggttaacaacaataaaactaaaacagaggCAGAACAAGGAACTATATGTGTATGGCAAGAACTTAGATTTTATTAACTCAGAGTATGTGTACTAAGATTTCAGACTGCTTATTTAGCTTTTTgagaataataatttgtaatactATTACctatcagtgtgtgtgggggggtgtttaacaaaattgtattgatGTTGGGAAGAAAGATTGTTGTCTCGTCTATTTTATATATCAGTCAATACTCCTTAATAACTGCTGATATACTGAAATTGGAACAATACCCAACTTaactgttgatttattttatgcttctgtgtatttgttaataaaagAATTGTAATCAGAGCACAACATATGGTATACATGTAGTGTGCTCCATATTTCATATGAGGATATGTACTGTCGGAAATTCACTTGTGTAGAGGGGCAAATCCCTTATAGTCCAGTCATGCTATGACAGAGGGGGTTAACCCACCACcaattgcaaaatatatgtatttttttttcagttttcaacccagaaaattaaaaaaaaaaaaaactataaatctTATATCATCCAAGTAGTGGAACAGTATCTCATTGACATAAATCCAATATGGCCGACAAGACATTACAATTTCAAGCCTATATGAGGAGTTTAATTCCATTTTAGTAGATATTTTAACACTAATTTTGATAAAACAGTGTCtattatatatcaatatatgttattgaaagaaaaccaaatgttaaaatgttttcttaaatgatATAATGATGTTTTATCAAG
>TU12082
attccccagCTAATGCAGCCTCTCACGGTGTCAGCGCAAACTGCAGCTCCCTGACCGCAGACACCGAGCGCCTTCAGGCGCAGAACTCACGCCACCGCCAGGTCCTCACCCAGCTCCTCACAAACCTCCCCTCTCTGGAGAAATACTGTCCTGTCCGAGATTCAGAGTCACAGGAGAGAGTTTGCCAGCCGTGCCCACAGGGCTGGCAGTCATTCAACTCCAAGTGTTACTACTTCTCTACCGAGAGACAGCGCTGGAATGACAGTCAGGCTGCATGCAGAGACCAGGGAGCTAACCTGGTGGTTATAGAGAGCAGAGAAGAACAGGAGTTCATCTGGAGACAGAGTATAAAGGCCTCCTGGCATTACTGGATTGGACTGACTGGCGCAGTGAAATGCAAAGCCTGGCTTTGGGTAGATGGCAGTAGCCTAAATGTACAGTACTGGGCCCCTGGAGAGCCGAATGACATCAGGGGAAAGGAGGAGTGTGTGGCCACTGCTGTTATTCTCAATCCTCTTCATAACTGGGTGGATCTGATTTGCAGCCAAGTGCATCGCTGGATCTGTGAAGGCAACCGCCTGCAGCTCACAGCCTAGGTGCCGTGATCTGGTTACACTGTGGCTGCGTTTCAGTAtcagtgtatacacacacattttaaaattctcaCTAGCAATCAAATTATAAGATCATGTTCATGttaattttttaaatgggttaacaacaataaaactaaaacagaggCAGAACAAGGAACTATATGTGTATGGCAAGAACTTAGATTTTATTAACTCAGAGTATGTGTACTAAGATTTCAGACTGCTTATTTAGCTTTTTgagaataataatttgtaatactATTACctatcagtgtgtgtgggggggtgtttaacaaaattgtattgatGTTGGGAAGAAAGATTGTTGTCTCGTCTATTTTATATATCAGTCAATACTCCTTAATAACTGCTGATATACTGAAATTGGAACAATACCCAACTTaactgttgatttattttatgcttctgtgtatttgttaataaaagAATTGTAATCAGAGCACAACATATGGTATACATGTAGTGTGCTCCATATTTCATATGAGGATATGTACTGTCGGAAATTCACTTGTGTAGAGGGGCAAATCCCTTATAGTCCAGTCATGCTATGACAGAGGGGGTTAACCCACCACcaattgcaaaatatatgtatttt

Function

GO: NA

KEGG:

id description
K10061 CLEC4G; C-type lectin superfamily 4 member G

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004652 True 1445 mRNA 0.40 4 55889982 55894075
TU12082 False 1212 lncRNA 0.44 4 55890253 55894086

Neighbor

gene id symbol gene type direction distance location
AMCG00004654 NA coding downstream 19022 55868647 ~ 55870960 (-)
AMCG00004648 NA coding downstream 204996 55682452 ~ 55684986 (-)
AMCG00004641 NA coding downstream 260999 55614612 ~ 55628983 (-)
AMCG00004637 NA coding downstream 427256 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 553749 55314396 ~ 55336233 (-)
AMCG00004663 NA coding upstream 199023 56093109 ~ 56096391 (-)
AMCG00004664 NA coding upstream 219319 56113405 ~ 56115924 (-)
AMCG00004662 NA coding upstream 253401 56147487 ~ 56162331 (-)
AMCG00004671 NA coding upstream 291131 56185217 ~ 56212864 (-)
AMCG00004674 NA coding upstream 507375 56401461 ~ 56409291 (-)
G9719 NA non-coding downstream 109375 55779425 ~ 55780607 (-)
G9701 NA non-coding downstream 167969 55721706 ~ 55722013 (-)
G9700 NA non-coding downstream 169765 55719964 ~ 55720217 (-)
G9698 NA non-coding downstream 171253 55718137 ~ 55718729 (-)
G9661 NA non-coding downstream 282566 55606927 ~ 55607416 (-)
G9751 NA non-coding upstream 3770 55897856 ~ 55898062 (-)
G9794 NA non-coding upstream 139412 56033498 ~ 56035949 (-)
G10007 NA non-coding upstream 172463 56066549 ~ 56068862 (-)
G10034 NA non-coding upstream 235356 56129442 ~ 56130558 (-)
G10061 NA non-coding upstream 459842 56353928 ~ 56354406 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other downstream 43811 55814402 ~ 55846171 (-)
AMCG00004649 NA other downstream 146685 55737565 ~ 55743297 (-)
AMCG00004640 NA other downstream 338757 55529650 ~ 55551225 (-)
G9604 NA other downstream 469924 55367585 ~ 55420058 (-)
G9608 NA other downstream 501043 55382216 ~ 55388939 (-)
AMCG00004660 LOC106605085 other upstream 111965 56006051 ~ 56008866 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 212627 56106713 ~ 56109085 (-)
AMCG00004672 NA other upstream 389908 56283994 ~ 56384870 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other upstream 556703 56450789 ~ 56484848 (-)
AMCG00004685 NA other upstream 718941 56613027 ~ 56752935 (-)

Expression


Co-expression Network