AMCG00004672


Basic Information

Item Value
gene id AMCG00004672
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56283994 ~ 56384870 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004672
ATGAAGAGgctgctGTGTGTCAATCAGTGCTGGGGGGCCGTGACTCCACCCCGGGCCCCTGTGCTGTTCGGGGAGGTGCTGTCCCCAGGGTACCCCGGCCCCTATCCCGCTTCTGTTAAATTGCAGTGGGAACTGGAGGTACCCCAGGGGTACAACCTCCTGCTCTCCTTCACACACTTGGACATTGAGCCATCACAGCACTGTCACTATGACTCACTGATGAATCAGTACCGGTCATTGATCCAGTACCGCTGCAATGAGCCATTCTACAAGCTGCCAACAAAGGGTGATGTACCGTCACTCACGCTCAGTGCTGTAGTGCAGTGTCCAGCCGCGGCTCTGGCCCTCCTGCCAGTGGTGTGGGCACAGTGCATGGTGCTGCTCTATATGGAAGAGCCCAGTGAAGTGGAGGCTGATGAGGAAGCCAGGGTCCACTGTGATGTTGTAGTGACAGGAGAGGCCAGGAGGGGAGGGACCCAGCGGTCACCCACCAGTGCCCCACCTGCTCGTCCCCAAAGAGTAATCAGGAGCACCTGCCATGGAAACGCCCCCTGCACCGCATCCTGGCCTCCCAGAATCCTCTGCGTCTTGGTGGGGGAGACAGTTGGCTgcccacacactgacagaagGAGTAGGGTTAGAagaagaaagggagggagggagaggaggaaggaaAGATGGAGTGTGGAGAGGaagaaggaaggagagggatGGAGTAGAGAGAGGGATGGCAGAGGGAGAAAGGGGGACGAAGATGAGAGGGGGAAAAGCTATGCCTCTGGCTGGGGCATCACCGAGGAATATATGATCACCAACAAGCTGCGCTTCATTTCCCTGCCTGTGGTGGACCAAGACAAGTGCCGTATTTCCATCgacaaacagagaggaaacAGAAAAGGGATCTCTGAGCTCACGGACAACATGTTCTGCGCTGGACTGCCCGAGGGGGGTGGAGACACCTGCCAGGGTGACAGTGGGGGGGCGTTTGTACTGCGGGACGGGGCAGGGGAGCGGTATTACGCAGCCGGGGTGGTGTCCTGGGGTATTAACTGTGGGGAGACGGGCTCCTATGGGGTTTACACTAGAGTGGGGAACTACAGGGCCTGGCTTAGAGAGACAATGGGGGAGGGATCATCTGCTGTCTTTGAGAAGTGGAACAAGGAACACATCAGAATGTGGGTCTCCAGGAGGGAACTGGACAGTACTCCTCTAATTCACTTACCTGACAGCCAGCAGGACACTCAGAAGGCAGAAAACTCAAGGGAAGCTAAAAACCCTGCACCAGGATCCACAAGTTCCAGAGCCCACACAAGTTACTTTTTCAACATCACCAGGGGATCAAGAAAGACATTACCCTATTCGTCCGAGAAAACCACCAGCAAAGTTGAACCTATTGAAGTTGTGCTATATGTATGGAACCCCTGGAGGATGAGACCGAGGCCCACTCTGCTGGTCGGGGTTGCTAGGCCAGCCCGGCATAGTCCGCACACCGAGGCCCAGTCCTTGCCTGGTCTCCTGCTGGTGGTGGAGGTTCCAGTGGGCTTGTGTCAtgagcTATCAACAAGGATAGTTAAGGTGTTGGATGGGGACGGTGTTTGGGAGGGAGTGTGGCAGTGCCGGATCCGGTTGAGGCGGTGTGTGGAGAACCTGGAGAAGGTCTGCCACCTCCCCAGTACTATACAGATTGGTGAAGCTAGAGGGCTGGTCTACTATGATGTGATGCCAAAACTCTGCAGGCGGTGTCAGGGCCGAGACCACGTTGTTGCCCAGTGCACAGCGGTGGTCAGCTGCAAGTGTAAGGGAGTCCTGGCCAAGCTGCTGATTGACCTCAGGCCAGGAGATGTTTTGTTGACACTGGGGTCCTGGTACAGCCCCGACTTAAGAACAGTCCACTGGTCCAGGACTTCTCCCACCTTCACCCCagatctcagcagcacagACACAGTCCCGACCGTGCTGGTCTTTCGTGGCTCCCACAGCCAGCGGCAATCCCTGTGCAGCTTGATGCTCACGGCCTCTCACCAGGGAACTCCACCGGCACTCCTGGATCCTCCCGGCCGAACAGCCACGgaactgcaacacaaacaactgGCACAGTCAACTGAAGGAGCTGAGAATGAAACACAGAAGGCAAAGGCCCGTGGATTCCTCCATATTGTGAAAGATGGGGCCATCATCAAATTCTCCTGCTTCCTTCATGACTTGCTGACTCACCTCAGCAGCCTGTCCCTAACCATGCAGCGGTCCTCAGTGACCGTGGCCGAAGTCAATGACTACCTGTCCTCCATCCTGGCTTTAATGTTCAAATACACATCTGGAGCTCGGCAAAGACGCCAAGCCAGATTGCAGGAGCAACGAGACCAAAGACTGGAATCTTTGCTGGCAGACCAGGCAGAATGCTGGAAAGCTTTGGAGAGCGACACTGAGCAGCCGGCGGGCTATAGCAACAGGAGTACCATCTTCAATGAGATGCCCGTGCCACCAAGGCAGAGCAATCATGCCACTTGCAAGCATACAGCGGGGGAGCAGAGGCTGCAGCTACTGTAG
>TU12516
CCTGCTTTGTCCACTGTGTATTCAGCTCCCTCGGGGGGCAGACATAGGGGCATGATGGTGCTGTTGACTGTGACTGGCTGCCTCAGCTTAAGCAGGCTATGCCTCTGGCTGGGGCATCACCGAGGAATATATGATCACCAACAAGCTGCGCTTCATTTCCCTGCCTGTGGTGGACCAAGACAAGTGCCGTATTTCCATCgacaaacagagaggaaacAGAAAAGGGATCTCTGAGCTCACGGACAACATGTTCTGCGCTGGACTGCCCGAGGGGGGTGGAGACACCTGCCAGGGTGACAGTGGG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004672 True 2547 mRNA 0.56 17 56283994 56384870
TU12516 False 304 lncRNA 0.56 2 56346873 56352140

Neighbor

gene id symbol gene type direction distance location
AMCG00004671 NA coding downstream 71130 56185217 ~ 56212864 (-)
AMCG00004662 NA coding downstream 121663 56147487 ~ 56162331 (-)
AMCG00004664 NA coding downstream 168070 56113405 ~ 56115924 (-)
AMCG00004663 NA coding downstream 187603 56093109 ~ 56096391 (-)
AMCG00004654 NA coding downstream 413034 55868647 ~ 55870960 (-)
AMCG00004674 NA coding upstream 16591 56401461 ~ 56409291 (-)
AMCG00004677 NA coding upstream 26115 56410985 ~ 56414424 (-)
AMCG00004678 NA coding upstream 32186 56417056 ~ 56422906 (-)
AMCG00004676 NA coding upstream 39718 56424588 ~ 56442956 (-)
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding upstream 109786 56494656 ~ 56511693 (-)
G10034 NA non-coding downstream 153436 56129442 ~ 56130558 (-)
G10007 NA non-coding downstream 215132 56066549 ~ 56068862 (-)
G9794 NA non-coding downstream 248045 56033498 ~ 56035949 (-)
G9751 NA non-coding downstream 385932 55897856 ~ 55898062 (-)
G9719 NA non-coding downstream 503387 55779425 ~ 55780607 (-)
G10067 NA non-coding upstream 85652 56470522 ~ 56471426 (-)
G10068 NA non-coding upstream 104698 56489568 ~ 56491763 (-)
G10073 NA non-coding upstream 130631 56515501 ~ 56516414 (-)
G10082 NA non-coding upstream 143746 56528616 ~ 57019807 (-)
G10093 NA non-coding upstream 221551 56606421 ~ 56647806 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 174909 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 275128 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 389908 55889982 ~ 55894086 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other downstream 437823 55814402 ~ 55846171 (-)
AMCG00004649 NA other downstream 540697 55737565 ~ 55743297 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other upstream 65919 56450789 ~ 56484848 (-)
AMCG00004685 NA other upstream 228157 56613027 ~ 56752935 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other upstream 300867 56685737 ~ 56690492 (-)
AMCG00004690 NA other upstream 305849 56690719 ~ 56691706 (-)
G10115 NA other upstream 362921 56747791 ~ 56750963 (-)

Expression


Co-expression Network