AMCG00004671


Basic Information

Item Value
gene id AMCG00004671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56185217 ~ 56212864 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004671
ATGGGACTTGTGGCTGAACAGATAGTTTTGGGACAGCATGAAAAGCTTGGTGTGCTGCTCTGGCCAAAATTCAAGCAGCTTCAGATGTTCACCTGTGCAGAGAGGGAGGACATATATGAAAGTGCACATAGAGAGTTGGCCAGCTTCCCCCCATCTGAAAGAGCTACAACTGAGGTGAATGCCCAGCAGATGAAAGAGGAAGATAAAGAGGAGATGGCTGGGCCAGCGCCACTCTTCAGCCAGTGGGCTGACATCGAGAATGCTGAACTTGACACAGGGCCTGATGAACTGGAACAATATTTTCAGCACAAGCCCACAATGCAGAATGATAGAGACATCATTACTTTTTGGAAACACAACCAAAATATGTTCCCATCAATGGCCCGACTGGCaagaaaaatactttgtgtGCCTGCATCCAGTTCTGTCGATGCCAAAGCTCTCAGTGAAGGTAGGGAAAGGAATTGCACTGAGTCTCAACACCGCGAGGAGGAGCAGGGATCCAGTTTGAGGCTCAATAAGCAGTACAGGAGTGCACAATGCAGTGTGGAGGAGCTCAATGCATTGGAGCCCGTCCTCATGGCAGAGCTAGGTCCCGAGCATACAACACACAGGCACAATGTAGCCGCATCAGAGCACATAACTGAGGAGATCAAAAACTTGTATCTAATGAACAGTATagaaaatctccatgaaattgGACGCATCATTAAACAGGAGCACATAGAAGTGGAGTTGAGTGACCTGGATAACTTTAAATCTTCACAGCAGCACAGTGAAATTGTGGACAAAGATGAGAAAAGCGCCGTTAAGTGTATAACATGTCATGCCGAGGTCGTGAGCCGCACGACTCAGCAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004671 True 861 mRNA 0.47 4 56185217 56212864

Neighbor

gene id symbol gene type direction distance location
AMCG00004662 NA coding downstream 22886 56147487 ~ 56162331 (-)
AMCG00004664 NA coding downstream 69293 56113405 ~ 56115924 (-)
AMCG00004663 NA coding downstream 88826 56093109 ~ 56096391 (-)
AMCG00004654 NA coding downstream 314257 55868647 ~ 55870960 (-)
AMCG00004648 NA coding downstream 500231 55682452 ~ 55684986 (-)
AMCG00004674 NA coding upstream 188597 56401461 ~ 56409291 (-)
AMCG00004677 NA coding upstream 198121 56410985 ~ 56414424 (-)
AMCG00004678 NA coding upstream 204192 56417056 ~ 56422906 (-)
AMCG00004676 NA coding upstream 211724 56424588 ~ 56442956 (-)
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding upstream 281792 56494656 ~ 56511693 (-)
G10034 NA non-coding downstream 54659 56129442 ~ 56130558 (-)
G10007 NA non-coding downstream 116355 56066549 ~ 56068862 (-)
G9794 NA non-coding downstream 149268 56033498 ~ 56035949 (-)
G9751 NA non-coding downstream 287155 55897856 ~ 55898062 (-)
G9719 NA non-coding downstream 404610 55779425 ~ 55780607 (-)
G10061 NA non-coding upstream 141064 56353928 ~ 56354406 (-)
G10067 NA non-coding upstream 257658 56470522 ~ 56471426 (-)
G10068 NA non-coding upstream 276704 56489568 ~ 56491763 (-)
G10073 NA non-coding upstream 302637 56515501 ~ 56516414 (-)
G10082 NA non-coding upstream 315752 56528616 ~ 57019807 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 76132 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 176351 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 291131 55889982 ~ 55894086 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other downstream 339046 55814402 ~ 55846171 (-)
AMCG00004649 NA other downstream 441920 55737565 ~ 55743297 (-)
AMCG00004672 NA other upstream 71130 56283994 ~ 56384870 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other upstream 237925 56450789 ~ 56484848 (-)
AMCG00004685 NA other upstream 400163 56613027 ~ 56752935 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other upstream 472873 56685737 ~ 56690492 (-)
AMCG00004690 NA other upstream 477855 56690719 ~ 56691706 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000393_00119066_00121441 NA coding CI01000393 null 118549 ~ 121919 (+)