AMCG00004653 (znf384l,LOC108433737,LOC107665159,LOC106605395)


Basic Information

Item Value
gene id AMCG00004653
gene name znf384l,LOC108433737,LOC107665159,LOC106605395
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55814402 ~ 55846171 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004653
AAAAAGGAAGCAACACCGTATTACCGATAAAACTACCGAGTATTATGAGTCTGATACATAACCTACATGACTTTTCTGCAATCACGTAATGTACAGCTGTCTGGAAAGCTATATGggcacaaataatgtgttaaacaaCCTGGGGACAAATTGAACGTCCTAAATATACTGCCACACCCAGAGAAGTGCGTTTTTGAGAACCATTCCCATTTCCTGTGCATCTGGAGCGGCTGCTCAGGCTGAGCCCCACTCGGTCGGTACCTCCGCAGCCGCGCTGCTCCTCCCCTCGGTCTGGCGTCCTCTAGCGGTACCGGGCCGCCATAGCCGCGCAGGGTGACGTCACCCCACAGTCCTGGCCCGCGCTCCGCAAAAtggagctttttatttttttcacagcaGCCAAGTCCGTCTTCAATAAGCCAGCGAGCCGGGCCAAGAGGCCGGGCGGAGCAGCGCGACGCCGTGACGAGTCGGCCAGGGCACACTAGACCGACACTGAGTTTGAACTGTTTCGGGGCAGACGCGGGAGGCGCCGTACCGAGGAACCTGGGGGTCGAGATTATCagagttgctgttgttgttgtatcGATTCTCCGGAGCGGCCGCCATCTTGGAGCTGTCTTTGTTGCAACTGGACCTCACTCGCCGGAAGTAGTGTCACAACACCCGCCGTTTTCCCCTCTTTTGACCTCACTCACCGGAAGCGCAGCGCAGACAGTCGCTGTTGCCTCCctcggaaaaaaaaaaacgagagcGAGCGAgcaggaggagagaaaaaaaagaaaaaaaagtcctcGCGCGGATCTGGGCCCCCGAACAATCCGGGGCTTTTGGACCAAGTTTCTCGCCGGCTCGGTTTCCTCGCTTCGAGCCGCCGCCGGGGGGAGGGGATCCGCCGCCAGCGCTGGAATGATGGAAGATTCCCATTTTAACTCATCGTATTTCTGGTCTCCAGTTCCCACAGTGCAAGGACAGaTTGAGAACGCCATGTTTCTCAACAAGATGAAGGAGCAGTTGGCCCCGGATAAGGCCTCCTCATTCCCCCactcctcgtcctcgtcctctcACTACCCTACGGCTGTGCTCACTGTGCCCCCAGTCACCATGGAGGCGGCGGGGGGAGGCAGCGGGGGTGGCAGCCGGGGGACCAAGCAGGAAGGAGGGGGGGGACCCTCACTGGGAGCGGGGCATctgcaccccccccacacctcccAGAACATCACTGTGGTCCCTGTGCCTTCCACTGGCATAATGACTGCAGCTGGTCTCGTGATCACAACCCCCCCGGGGGCCCTGGTCTCCAgccccccctcctcttcccaGTCCTTCGTCACTGGACACCCCACTACCACCATGATTGTGTCTACGCTGCATCCCCCACTGACAGACAAGCAGAAATCCGAAGATGGTGCCCAGTCCTCCCCGGTCGTCATGGCGGCACCCTCGAAGCGTGGTAGGAAGAAGAAATCGGTGCTGCCACGAGCGGGGCCGGGGGGGCCTGTCGGTGTGACCGGGCACAGTTTATCGGCAGGCAGCGATGCTCTAATTCTCGCTCACCTGGCAGCCGGAGGACAGCACCACACAACCGACCCCTATGACCTTTCTAATGATGAGGATGACCACGGAACTAAGGACGGAAACAAATCCTACAGGTGCAGGATGTGTGCAGTGACGTTCTTCTCCAAGTCAGACATGCAGATTCACGCCAAGTCACACACGGAAGCCAAACCCCACAAGTGCCCGCACTGCTCCAAGTCCTTCGCCAACTCCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGCGCCAAGCCCTACACCTGCTCCTACTGCCAGAAAACATTCAGGCAGCTCAgATCCACACTGGTGACCGGCCATATAAATGTGTTCACCCTGGATTCTCACCGTCGGCAACACAACAAGGACAAGCCATTCAAGTGTCACAACTGTCACCGCGCCTACACCGATTCAGCCAGCCTGGAGGTGCACCTGAGCACGCACACCGTCAAACACGCCAAGCTGTACAGCTGTGGCATGTGCAACCGCGCCTACACCTCCcagcagcggcggcAGCGGCGGTGGCCCAGAGCGCCCactctcagcagcagcagcagcaacagcagcagcagcagcagcagggcggAGGGGCAGGCgcgggtgggggggTACAAGACGGTGGCGGCCGGCGAGATCCAGTACAAACCAGTCAGCGTGAGTGAGCTGCCCACACACAAAGACCTCTGTCTCACTGTGGCCACCTCCACTATACAGGTGGAACACCTCAACTCCTAG
>TU12067
GGGGACCCTCACTGGGAGCGGGGCATctgcaccccccccacacctcccAGAACATCACTGTGGTCCCTGTGCCTTCCACTGGCATAATGACTGCAGCTGGTCTCGTGATCACAACCCCCCCGGGGGCCCTGGTCTCCAgccccccctcctcttcccaGTCCTTCGTCACTGGACACCCCACTACCACCATGATTGTGTCTACGCTGCATCCCCCACTGACAGACAAGCAGAAATCCGAAGATGGTGCCCAGTCCTCCCCGGTCGTCATGGCGGCACCCTCGAAGCGTGGTAGGAAGAAGAAATCGGTGCTGCCACGAGCGGGGCCGGGGGGGCCTGTCGGTGTGACCGGGCACAGTTTATCGGCAGGCAGCGATGCTCTAATTCTCGCTCACCTGGCAGCCGGAGGACAGCACCACACAACCGACCCCTATGACCTTTCTAATGATGAGGATGACCACGGAACTAAGGACGGAAACAAATCCTACAGGTGCAGGATGTGTGCAGTGACGTTCTTCTCCAAGTCAGACATGCAGATTCACGCCAAGTCACACACGGAAGCCAAACCCCACAAGTGCCCGCACTGCTCCAAGTCCTTCGCCAACTCCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGCGCCAAGCCCTACACCTGCTCCTACTGCCAGAAAACATTCAGGCAGCTCAGTCACTTACAGCAGCACACACGAAACCACACAGAAGCCAAACCCCACAAGTGCCCGCACTGCTCCAAGTCCTTCGCCAACTCCAGC

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004653 True 2292 mRNA 0.59 11 55814402 55846171
TU12067 False 776 TUCP 0.60 6 55822149 55836177

Neighbor

gene id symbol gene type direction distance location
AMCG00004648 NA coding downstream 129416 55682452 ~ 55684986 (-)
AMCG00004641 NA coding downstream 185419 55614612 ~ 55628983 (-)
AMCG00004637 NA coding downstream 351676 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 478169 55314396 ~ 55336233 (-)
AMCG00004631 NA coding downstream 500631 55311400 ~ 55313771 (-)
AMCG00004654 NA coding upstream 22476 55868647 ~ 55870960 (-)
AMCG00004663 NA coding upstream 246938 56093109 ~ 56096391 (-)
AMCG00004664 NA coding upstream 267234 56113405 ~ 56115924 (-)
AMCG00004662 NA coding upstream 301316 56147487 ~ 56162331 (-)
AMCG00004671 NA coding upstream 339046 56185217 ~ 56212864 (-)
G9719 NA non-coding downstream 33795 55779425 ~ 55780607 (-)
G9701 NA non-coding downstream 92389 55721706 ~ 55722013 (-)
G9700 NA non-coding downstream 94185 55719964 ~ 55720217 (-)
G9698 NA non-coding downstream 95673 55718137 ~ 55718729 (-)
G9661 NA non-coding downstream 206986 55606927 ~ 55607416 (-)
G9751 NA non-coding upstream 51685 55897856 ~ 55898062 (-)
G9794 NA non-coding upstream 187327 56033498 ~ 56035949 (-)
G10007 NA non-coding upstream 220378 56066549 ~ 56068862 (-)
G10034 NA non-coding upstream 283271 56129442 ~ 56130558 (-)
G10061 NA non-coding upstream 507757 56353928 ~ 56354406 (-)
AMCG00004649 NA other downstream 71105 55737565 ~ 55743297 (-)
AMCG00004640 NA other downstream 263177 55529650 ~ 55551225 (-)
G9604 NA other downstream 394344 55367585 ~ 55420058 (-)
G9608 NA other downstream 425463 55382216 ~ 55388939 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 894464 54915584 ~ 54919938 (-)
AMCG00004652 NA other upstream 43811 55889982 ~ 55894086 (-)
AMCG00004660 LOC106605085 other upstream 159880 56006051 ~ 56008866 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 260542 56106713 ~ 56109085 (-)
AMCG00004672 NA other upstream 437823 56283994 ~ 56384870 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other upstream 604618 56450789 ~ 56484848 (-)

Expression


Co-expression Network