AMCG00004663


Basic Information

Item Value
gene id AMCG00004663
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56093109 ~ 56096391 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004663
ATGGGAGAAGTGGAGCAGCTTCGCAAAGAGGCAGAGACCCTCAAAAATCAAATCACTGAAGCACGAAAGGCAGTGGCCGACACGACCTTGGCGGACATCGTCGCAGGGACAGAGGTAGTGGGGCGTATCCAGATGAGGACCAGGAAGACGCTCAGAGGACACCTGGCCAAGATCTACGCCATGCACTGGAGCACCGACTCCAGGTTGTTGGTCAGTGCCTCACAGGATGGAAAGTTGATTGTGTGGGACAGCTACACAACTAATAAGGTGAATGCAATCCCTCTGAAGTCCTCGTGGGTGATGACATGCTCATACGCTCCCTCTGGGAACTTTGTGGCATGTGGAGGCCTGGACAACATGTGCTCCATCTACAACCTCAAGACCAGGGAGGGCAATGTCAAAATCGTGACCAGCTCTGGAGACACCACCTGCGCTCTATGGGATATTGAGACAGGCACGCAGAAGACAGTGTTCACAGGCCACACTGGAGACTGCATGAGCTTGGCTGTCTCGCCCGAATTCAACCTGTTCATCTCCGGGGCCTGCGACTCCTCGGCCAAGCTGTGGGACGTCCGGGAGGGAGCCTGCAGGCAGACCTTCACTGGGCACGAATCAGACATCAACGCCATCTGCTTCTTTCCCAATGGTAATGCCATCTGCACAGGCTCAGATGATGCCACCTGCAAGCTCTTTGACCTCCGCGCTGACCAGGAGCTGATTAGTTTTTCCCACGAGAGCATCATCTGTGGCATCACCTCCATTGCCATGTCCCGCAGCGGCAGGCTCATCCTGGCCGGGTACGATGACTTCAACTGCAACATCTGGGACGCCCTGAAGGCCGAGAGAGTGGgagTTCTCTCTGGTCATGATAACCGTGTAAGCTGCATTGGAGTGACCTGTGATGGCATGGCTGCCTGCACAGGATCCTGGGATAGCTTCCTGAAAATCTGGAACtga

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K07825 GNB3; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004663 True 957 mRNA 0.55 8 56093109 56096391

Neighbor

gene id symbol gene type direction distance location
AMCG00004654 NA coding downstream 222149 55868647 ~ 55870960 (-)
AMCG00004648 NA coding downstream 408123 55682452 ~ 55684986 (-)
AMCG00004641 NA coding downstream 464126 55614612 ~ 55628983 (-)
AMCG00004637 NA coding downstream 630383 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 756876 55314396 ~ 55336233 (-)
AMCG00004664 NA coding upstream 17014 56113405 ~ 56115924 (-)
AMCG00004662 NA coding upstream 51096 56147487 ~ 56162331 (-)
AMCG00004671 NA coding upstream 88826 56185217 ~ 56212864 (-)
AMCG00004674 NA coding upstream 305070 56401461 ~ 56409291 (-)
AMCG00004677 NA coding upstream 314594 56410985 ~ 56414424 (-)
G10007 NA non-coding downstream 24247 56066549 ~ 56068862 (-)
G9794 NA non-coding downstream 57160 56033498 ~ 56035949 (-)
G9751 NA non-coding downstream 195047 55897856 ~ 55898062 (-)
G9719 NA non-coding downstream 312502 55779425 ~ 55780607 (-)
G9701 NA non-coding downstream 371096 55721706 ~ 55722013 (-)
G10034 NA non-coding upstream 33051 56129442 ~ 56130558 (-)
G10061 NA non-coding upstream 257537 56353928 ~ 56354406 (-)
G10067 NA non-coding upstream 374131 56470522 ~ 56471426 (-)
G10068 NA non-coding upstream 393177 56489568 ~ 56491763 (-)
G10073 NA non-coding upstream 419110 56515501 ~ 56516414 (-)
AMCG00004660 LOC106605085 other downstream 84243 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 199023 55889982 ~ 55894086 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other downstream 246938 55814402 ~ 55846171 (-)
AMCG00004649 NA other downstream 349812 55737565 ~ 55743297 (-)
AMCG00004640 NA other downstream 541884 55529650 ~ 55551225 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 10322 56106713 ~ 56109085 (-)
AMCG00004672 NA other upstream 187603 56283994 ~ 56384870 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other upstream 354398 56450789 ~ 56484848 (-)
AMCG00004685 NA other upstream 516636 56613027 ~ 56752935 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other upstream 589346 56685737 ~ 56690492 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009750 gnb3a coding NC_007127.7 CM002900.2 12022543 ~ 12049762 (+)
eurasian perch (Perca fluviatilis) G75582 gnb3,LOC103375278 non-coding NC_053118.1 CM020915.1 24119317 ~ 24122009 (+)
mexican tetra (Astyanax mexicanus) G75026 NA non-coding NC_035904.1 CM008307.1 19761774 ~ 19765765 (+)