AMCG00004649


Basic Information

Item Value
gene id AMCG00004649
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55737565 ~ 55743297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004649
TCTCACTTAACTGGAAAATGAAAGCAGGCctcatttcaaatgaaatgtgagCTATTAAGTTTCGTTTCATGGGAATCCCAAACGAACAACAGGGAGGCGTGGACAGTGGAGCTTGTTTAAAGGAGGCTTCACTCTGCTCGAAAACATAATCAAGCATCTTAGGAggttatttgtaatttgcatacATATCTATGCGCAAGAGACGCACGTTTGCAAAGATAATACTGGGATAttgatcaataataaaaaatgactaCAGGTacgtaatttaaaatgtactgaggagggagagagattgagTTTAACAGTTGTGCTATGGAGTCCGAACAGAGATGGTCTAGCAGAATTAGTGACAGACAGCAGACAATTTAACGTATGTCTTTTTGAACTTCAGACTGGATTCCCACTCTTTGGCAGGACACTTTCAGTGAAATGCTGGAGGAGGAACTGGAATATAATGATAGCTGGAGCTTCAATTCAATTATAGCCTGAAAGAGGATCTCGGCAAAGAGGAGAGAAAACGGGGCTGGAAGATTTATTGCCACTGTGCCCGCGGCAATGACTGCTCCAAAAACTTGGCCTTCAGCACGTGTGGTGGTTTTCTTTCACTACCGGCTACGGGGCGGTTCACACCACCGTGGAACTGTTATAATGCGGCCGTTTGGACAGGCGTGTCGCCGCTGCAATGAGGACTACTGGTTGCCGGGGTTTTCACAAGAGGAGGTGGAAAATGTCCTCCTAAAGCTGTTTagcaaaattaagaaaaactgCTACGGTGAAGACAATGACGATGACAGTTCCGACAGTTCTGAAAAGGTCTGGACAAAACCACATGAGAGCTCGCTGTGTGAAGCCTGCAACTAG
>TU12027
ATACCATGGTGAAGGGAGGAAAATCAAGGGTCcgtaaaagaaaagagagagtgtCAAGGTCACCGGATTCACCAATAGAAGAATGTAGAAGAAATTATCAAACTCAAATGAAGCCACAGGTGGATTTACAGTTGAATCTTTGCTGAAGCCATCAAACTTCAAGCAGCAAAGAAGAGTCAGCGAGACATTACTGGGAGCTTTACAATCGTCAACTGCCCAAAATGTGCACAAACCTCCAGCTGTATGGACATGACACTACAGTAGAAAAGCTAAAGAAGAAATGTAACAATCTCCTTGTCACCAGAGGGCAAATAACAGGAGTTGGGTGTCTGGACAGGCCCAGCTTACATAGGAGAACTTTGAGGTAATGGATAGTCTGCTCTGCAAGAGAAAGGGGGCTTTAGCAACAATAGAGACCATTGTAACAACAAAGCCATTCCCAGGTTTGTCTGTGCCACAGTGACTCTTCTAAAGCCTCTTCCCAACCACTTTCATTAACATCAGGATGGACTGTGTGTGGCCATTGAGATTCCAGCCTCCCTCCCCCAACACATCCTACGAAAAAGAACAGCCTGGTGGAAATACAGCAGGAGGCATTTGACTGAACAAGCAGATCAGACTGGAAAAAGgacaaacacttttaaaacgTATGCATGGCAACTGTAGAAAAACTGTCGGAAAGCCGAACAGAGGGGTAGAAGAAGGGGGAAACAAATGTGAAGGAGCATGTTCATTTTTATAGGAATAAAGAATACAAGAACATATTCAAAAGtgaagaaaacatgttaaagTAGTCAATATGTTCAGTTTATTTCCAATGATGTAGCTTCTTTTTAATTGGTATTTACAGAGCTCACTGGCAGCCTGTCACAAGCTGTCTCACTTAACTGGAAAATGAAAGCAGGCctcatttcaaatgaaatgtgagCTATTAAGTTTCGTTTCATGGGAATCCCAAACGAACAACAGGGAGGCGTGGACAGTGGAGCTTGTTTAAAGGAGGCTTCACTCTGCTCGAAAACATAATCAAGCATCTTAGGAggttatttgtaatttgcatacATATCTATGCGCAAGAGACGCACGTTTGCAAAGATAATACTGGGATAttgatcaataataaaaaatgactaCAGGTacgtaatttaaaatgtactgaggagggagagagattgagTTTAACAGTTGTGCTATGGAGTCCGAACAGAGATGGTCTAGCAGAATTAGTGACAGACAGCAGACAATTTAACGTATGTCTTTTTGAACTTCAGACTGGATTCCCACTCTTTGGCAGGACACTTTCAGTGAAATGCTGGAGGAGGAACTGGAATATAATGATAGCTGGAGCTTCAATTCAATTATAGCCTGAAAGAGGATCTCGGCAAAGAGGAGAGAAAACGGGGCTGGAAGATTTATTGCCACTGTGCCCGCGGCAAATTTAGGTGCAGTGACTGCTCCAAAAACTTGGCCTTCAGCACGTGTGGTGGTTTTCTTTCACTACCGGCTACGGGGCGGTTCACACCACCGTGGAACTGTTATAATGCGGCCGTTTGGACAGGCGTGTCGCCGCTGCAATGAGGACTACTGGTTGCCGGGGTTTTCACAAGAGGAGGTGGAAAATGTCCTCCTAAAGCTGTTTagcaaaattaagaaaaactgCTACGGTGAAGACAATGACGATGACAGTTCCGACAGTTCTGAAAAGGTCTGGACAAAACCACATGAGAGCTCGCTGTGTGAAGCCTGCAACTAGGGGATCTGTTGCATGGAAGATTAATAGTTCTTGTAAAGTGTAATAACTATCCATCACTATAAGATGTTTATAAAGAGAGCTGGCCTATTCAAACAATTGTAAGCTGTTATGAAAACTGACAAtctctggtttgtttttgtagttgaATCAGATGCCATTGCTCTGCACAACACTTTTAACTTTTAAGGCTGTAAgtcattgtttatatataaatcaatgaaaCAATCTCAGAAACACCTTAAATCGAAGGAAATAGATAATGAATTCGCACATAAAAGGGACCAGCAGtaattgtttattatcattTGTCATTTCATGTTTATCATCTTTCAATAACAATTGCTATGAAATGTCAGTGACCACAAAACGGGGGAGCTAGGGAGCCCTCCGTTTTCCATTTTTAACAATTATGACTGATGAATACAGATCCAGTGTGTAGCGTAATATTCACCCATTCTTATGGGCtggtctgttttattatttattgcacatAACTCATGCCCGAAGTGTGGTCATAGGGTTAGATCTCCTATCATGttgtgtacagtgtacagtggtcttttaaactaatttaatattttaattaaaaatattaataaaaactgtcATGATGCTGTTTGAATCCTT
>TU12028
ATACCATGGTGAAGGGAGGAAAATCAAGGGTCcgtaaaagaaaagagagagtgtCAAGGTCACCGGATTCACCAATAGAAGAATGTAGAAGAAATTATCAAACTCAAATGAAGCCACAGGTGGATTTACAGTTGAATCTTTGCTGAAGCCATCAAACTTCAAGCAGCAAAGAAGAGTCAGCGAGACATTACTGGGAGCTTTACAATCGTCAACTGCCCAAAATGTGCACAAACCTCCAGCTGTATGGACATGACACTACAGTAGAAAAGCTAAAGAAGAAATGTAACAATCTCCTTGTCACCAGAGGGCAAATAACAGGAGTTGGGTGTCTGGACAGGCCCAGCTTACATAGGAGAACTTTGAGGTAATGGATAGTCTGCTCTGCAAGAGAAAGGGGGCTTTAGCAACAATAGAGACCATTGTAACAACAAAGCCATTCCCAGGTTTGTCTGTGCCACAGTGACTCTTCTAAAGCCTCTTCCCAACCACTTTCATTAACATCAGGATGGACTGTGTGTGGCCATTGAGATTCCAGCCTCCCTCCCCCAACACATCCTACGAAAAAGAACAGCCTGGTGGAAATACAGCAGGAGGCATTTGACTGAACAAGCAGATCAGACTGGAAAAAGgacaaacacttttaaaacACTGGATTCCCACTCTTTGGCAGGACACTTTCAGTGAAATGCTGGAGGAGGAACTGGAATATAATGATAGCTGGAGCTTCAATTCAATTATAGCCTGAAAGAGGATCTCGGCAAAGAGGAGAGAAAACGGGGCTGGAAGATTTATTGCCACTGTGCCCGCGGCAAATTTAGGTGCAGTGACTGCTCCAAAAACTTGGCCTTCAGCACGTGTGGTGGTTTTCTTTCACTACCGGCTACGGGGCGGTTCACACCACCGTGGAACTGTTATAATGCGGCCGTTTGGACAGGCGTGTCGCCGCTGCAATGAGGACTACTGGTTGCCGGGGTTTTCACAAGAGGAGGTGGAAAATGTCCTCCTAAAGCTGTTTagcaaaattaagaaaaactgCTACGGTGAAGACAATGACGATGACAGTTCCGACAGTTCTGAAAAGGTCTGGACAAAACCACATGAGAGCTCGCTGTGTGAAGCCTGCAACTAGGGGATCTGTTGCATGGAAGATTAATAGTTCTTGTAAAGTGTAATAACTATCCATCACTATAAGATGTTTATAAAGAGAGCTGGCCTATTCAAACAATTGTAAGCTGTTATGAAAACTGACAAtctctggtttgtttttgtagttgaATCAGATGCCATTGCTCTGCACAACACTTTTAACTTTTAAGGCTGTAAgtcattgtttatatataaatcaatgaaaCAATCTCAGAAACACCTTAAATCGAAGGAAATAGATAATGAATTCGCACATAAAAGGGACCAGCAGtaattgtttattatcattTGTCATTTCATGTTTATCATCTTTCAATAACAATTGCTATGAAATGTCAGTGACCACAAAACGGGGGAGCTAGGGAGCCCTCCGTTTTCCATTTTTAACAATTATGACTGATGAATACAGATCCAGTGTGTAGCGTAATATTCACCCATTCTTATGGGCtggtctgttttattatttattgcacatAACTCATGCCCGAAGTGTGGTCATAGGGTTAGATCTCCTATCATGttgtgtacagtgtacagtggtcttttaaactaatttaatattttaattaaaaatattaataaaaactgtcATGATGCTGTTTGAATCCTT

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004649 False 864 mRNA 0.44 2 55738192 55739532
TU12027 True 2380 lncRNA 0.55 6 55737565 55743297
TU12028 False 1756 lncRNA 0.42 7 55737565 55743297

Neighbor

gene id symbol gene type direction distance location
AMCG00004648 NA coding downstream 52579 55682452 ~ 55684986 (-)
AMCG00004641 NA coding downstream 108582 55614612 ~ 55628983 (-)
AMCG00004637 NA coding downstream 274839 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 401332 55314396 ~ 55336233 (-)
AMCG00004631 NA coding downstream 423794 55311400 ~ 55313771 (-)
AMCG00004654 NA coding upstream 125350 55868647 ~ 55870960 (-)
AMCG00004663 NA coding upstream 349812 56093109 ~ 56096391 (-)
AMCG00004664 NA coding upstream 370108 56113405 ~ 56115924 (-)
AMCG00004662 NA coding upstream 404190 56147487 ~ 56162331 (-)
AMCG00004671 NA coding upstream 441920 56185217 ~ 56212864 (-)
G9701 NA non-coding downstream 15552 55721706 ~ 55722013 (-)
G9700 NA non-coding downstream 17348 55719964 ~ 55720217 (-)
G9698 NA non-coding downstream 18836 55718137 ~ 55718729 (-)
G9661 NA non-coding downstream 130149 55606927 ~ 55607416 (-)
G9650 NA non-coding downstream 131990 55585048 ~ 55605575 (-)
G9719 NA non-coding upstream 36128 55779425 ~ 55780607 (-)
G9751 NA non-coding upstream 154559 55897856 ~ 55898062 (-)
G9794 NA non-coding upstream 290201 56033498 ~ 56035949 (-)
G10007 NA non-coding upstream 323252 56066549 ~ 56068862 (-)
G10034 NA non-coding upstream 386145 56129442 ~ 56130558 (-)
AMCG00004640 NA other downstream 186340 55529650 ~ 55551225 (-)
G9604 NA other downstream 317507 55367585 ~ 55420058 (-)
G9608 NA other downstream 348626 55382216 ~ 55388939 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 817627 54915584 ~ 54919938 (-)
G9414 NA other downstream 1117510 54576640 ~ 54620055 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 71105 55814402 ~ 55846171 (-)
AMCG00004652 NA other upstream 146685 55889982 ~ 55894086 (-)
AMCG00004660 LOC106605085 other upstream 262754 56006051 ~ 56008866 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 363416 56106713 ~ 56109085 (-)
AMCG00004672 NA other upstream 540697 56283994 ~ 56384870 (-)

Expression


Co-expression Network