AMCG00004675 (chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911)


Basic Information

Item Value
gene id AMCG00004675
gene name chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56450789 ~ 56484848 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004675
ATGGGGAAATGGGTCACATTTTTCCGAGACCACGAACAGTTCTACGACAATGAAGAGGACCTGGAGGAGGAACTATCGGAAGGCGATGCCCCCaaggtgaagaagaagaagaaagcaaagaagagccGAGAGAGCAAGACGGGCAAGCGAGCCAGACTGAGGAGAGAGgaggaggatggggtGGGCggtggaggaggagcagcaggaggaggagtgggAGGGGGGGTGCGCTCGGACAGTGAAGGCAGTGACTACACCCCTGGTaggaagagaaagaagagaGCGAGTTCTACGAAGAAGGAAAAGAGAGCTACCGGTGGTgggggcggaggaggaggaggaggcggcaCCGGAGGAGGCAGCGGTGGGAGCAGCAAGAGCAAAAGGAAGGAACCCGAgccagaggaagaggaggaggaggaggacagtcagGAGCCCAAGTCCTCGGCTCAGCTGCTGGAGGAATGGGGGATGGATGACATCGAGCATGTCTTCACCCAGGAGGACTACCGGACCCTCACCAATTATAAAGCCTTCAGCCAGTTTGTCAGGCCCCTGATCGCAGCCAAGAACCCTAAGATCGCCGTGTCCAAGATGATGATGGTGCTGGGGGCCAAGTGGCGGGAGTTCAGCACCAACAATCCGCTGAGAGGCAGCGCGGGGGCCAGCGCCGCTGCTGCCGCTGCAGCCGTGGCCGCCGTGGTGGAGAgcatggtggggggggggcaggacgGAGCCCCCCCTGCTACCACACCCCTGCTctcctctgcccccccaccctcctccagTGCTCCCGCTGTTAACGCCAACACAGCTGCTGCCACCATCAGCGAggcccctccccccccccctctgagGAAGGCCAAGACGAAGGAGGGCAAAGTGGAGAAGAAGGTGAAGACCAAGAAGGTGGCACCACTGAAAATCAAACTGGGTGGCTTCAGCAGCAAGAGAAAGAGATCATcgAGCGAGGAGGACGATGTGGATGTGGACAGCGACTTCGACGATGGCAGCCTGACTAGCTTCTCGGTGTCCGATGGGTCCACCAGCAGGAGCAGCCGCAGCAAGAGGAGAAGCAAGGGCAGCAAGAAGAAGAGAAAGGAGGAGGACGCTGACGGCTATGAGACCGATCACCAGGACTATTGTGAGGTGTGCCAGCAGGGCGGTGAGATCATCCTGTGTGACACCTGCCCCCGGGCCTACCACATGGTGTGCCTGGACCCCGACATGGAGAAGGCCCCCGAGGGACGCTGGAGCTGCCCCCACTGTGAGAAGGAGGGCGTGCAGTGGGAGGCGAGGGAGGAGGGCTCAGAAGCTGAGGAGGACACCGAGGTGGGGGCAGGTGCAGCAGGAGGGGAGGCGGAGGAGGACGACCACCACATGGAGTTCTGCCGGGTGTGCAAAGATGGCGGCGAGCTCCTCTGCTGCGACTCCTGCCCTTCCTCCTACCACATCCATTGCCTGAACCCACCCCTGCCTGAGATCCCCAACGGCGAGTGGCTGTGTCCCCGCTGCACATGCCCTTCTATGAAAGGGAAGGTGCAGAAGATCCTGACTTGGCGCTGGGGGGAaccgcccccccccactccGGTTCCGCGCCCACACGGTCTGTCTGCTGATGCCCCTGACCCCACCCCCCTGGCGGGCCGGCCTGAGAGGGAGTTTTTTGTCAAGTGGAGCAACCTGTCCTACTGGCACTGCTCCTGGGTCTCTGAGCTGCAGCTGGAGCTGCACTGTCAGGTGATGTTCCGGAACTATCAGCGCAAGAATGACATGGACGACCCACCCCCTGTGGAGTTTGGGGCTGAGGGGGACGAGGACAAGAGCACAAAGAGGAAGAACAAGGACCCCGTGTACGCAGAGATGGAGGAGCGCTTCTATCGCTTCGGCATCAAGATGGAGTGGATGATGATCCATCGCATCCTCAACCACAGtgtgGATAAGAAGAATAATGTTCACTACCTGATCAAGTGGAGAGACCTGCCCTATGATCAGGCCACCTGGGAGGCCGAGGACATGGACATCCCTGAGTATGATAGCTACAAACAGGGCTACTGGAACCACAGggagcTGATGATGGGGGATGAGGGTAGGCCCGGCAAGAAGCTGAAGCTGAAAGGCAAAGTGAAGAAGCTGGACAGACCACCAGATAATCCTGTCATTGATcccACCATTAAGTTCGACCGGCAGCCAGACTACCTGGACAGCACCGGGGGCACCTTGCACGCCTACCAGCTCGAGGGGCTGAACTGGCTGCGCTTCTCCTGGGCTCAGGGCACTGACACCATCCTGGCTGATGAGATGGGCCTGGGCAAGACTGTGCAGACCGCGGTTTTCCTCTACTCACTGTACAAGGAGGGTCACTCGAAGGGACCATTCCTGGTCAGTGCCCCCCTATCCACCATCATTAACTGGGAGCGCGAGTTCGAGATGTGGGCACCAGACATGTATGTGGTCACGTACGTGGGGGACAAGGACAGCCGTGCGGTCATCAGGGAGAACGAGTTCTCCTTCGAAGACAACGCCATCCGTGGAGGGAAGAAGGCATCCAAGATGAAGAAAGAGGCCTCGGTGAAGTTTCATGTGCTGCTGACCTCCTATGAGCTCATCACTATCGACATGGCCATCCTGGGCTCCATCAACTGGGCCTGCCTGGTGGTGGACGAGGCACACAGGCTGAAGAACAACCAGTCCAAGTTCTTCAGGGTGCTTAACAACTACCCACTCCAGCACAAGCTGCTGCTGACTGGCACCCCCCTACAGAACAACTTGGAGGAGCTCTTCCACCTGCTCAACTTCCTCACCCCTGAGAGGTTCAAACTGAAGGCCGATGTGTTCAAGAACATGCCATCCAAGACTGAGCTGATCGTCAGGGTTGAGCTCAGCCCCATGCAGAAGAAGTACTACAAGTTCATCCTCACCCGGAACTTCGAGGCCCTGAACACGCGAGGGGGGGGCAACCAGGTGTCCCTGCTCAACGTTGTCATGGACCTGAAGAAGTGTTGCAACCACCCCTACCTCTTCCCCGTAGCTGCCATGGTACGATCTGCTACACAGGGCTGCCTTATGGAGGCCAGACTGAACCACTGGTGGGGTGGTGATGTTAAGAGGTGGGCCCTTAAATGTGGTGGTGATTGTCGATTTGCTGCCCTGCAGGAGGCCCCCAAGATGCCCAGTGGGATGTATGATGGCGGGGCTCTGACCAAGGCAGCCgggaagctgctgctgctgcagaagaTGCTGCGAAAACTCAAGGATGATGGACACAGGGTGCTGATCTTCTCACAGaTGACGAAGATGTTGGACCTACTGGAGGACTTCCTGGAGCATGAAGGATACAACAGGGCCCACCGCATTGGGCAGAACAGGAAGGTGATGATCTATCGCTTCGTGACCAAGGCTTCGGTGGAGGAGCGCATCACCCAGGTGGCCAAAAAAAAGATGATGCTGACTCACCTGGTGGTGCGTCCTGGCCTGGGCTCCAAGACTGGCTCAATGtccaagcaggagctggacgaCATCTTGAAGTTTGGCACAGAGGAGCTGTTCAAGGACGAGATTGGAGAGGGGGAAAACAAGGAGGGCGAGGACAGCAGTGTCATCCACTACGATGACAAGGCCATCGACCGGCTGCTGGACCGTAACCAGGATGCCACGGATGACACCGAGATCCAGAGCATGAATGAGTACCTGAGCTCCTTCAAGGTGGCCCAGTACGTGGTCAAGGACGAGGAGGAAGCGGAAGAGGAGGTGCAGAGGGAGATCATCAAGCAGGAGGAGAaCTGGCAGGACGACCAGTCAGACAACCAGTCGGATTACTCCGTGGCTTCAGAGGAAGGAGATGAGGACTTTGACGAACGAGCAGAAGTGAACTCGCGGAGGCCCAGCAGAAAGGGTCTGAGGAACGACAAGGACAAGCCACTGCCCCCCCTGCTGGCCAGAGTGGGTGGCAACATTGAGGTGCTGGGCTTCAATGCTCGTCAGAGGAAAGCATTCCTCAATGCCATCATGCGCTATGGGATGCCCCCCCAGGATGCCTTCACCACGCAATGGCTGGTCAGGGACCTGCGTGGCAAGTCTGAGAAGGAATTCAAGGCCTATGTGTCTCTATTCATGCGTCACCTTTGTGAGCCGGGGGCCGATGGGGCTGAGACTTTCGCCGATGGTGTCCCACGTGAGGGGTTGTCACGACAACACGTGCTCACACGCATCGGGGTGATGTCACTCATCCGCAAGAAGGTGCAGGAGTTTGAGCATGTGAATGGCCAGTGGTCAATGCCGTGGATGATGGAGATGGAAGCCAagggggagcgtgagaaggagaaagaaaaggaagaagtgaaggaggagaagaaagcaGAGGATAAGGATGTGACTGGAGGGTCCAATGAGGACGTCCGGGTCAAAACGGAGGACTCTGATACCAAAGTCTGTACTCTATTGTGCAGTCTGTGTATTAacccccttttctctctctctgtctcagaaCAAAAGGATGAGAAGGAGGGCAAGGCAGTGGTGGCAGCAGTGGAGGAGGGAGTGAAGGCTGCCGAGGTCAAGCTACAGAATGGAGAGAGTGTGAAAGAGGTCacagaggagaggaagaaagcaGTGAAGCAGAGGTTCATGTTCAACATCGCAGATGGAGGATTCACAGAGCTCCACTCTCTGTGGCAGAATGAGGAGAGGGCAGCAACTGTTACCAAGAAGACCTATGAGATCTGGCACCGTCGCCATGACTACTGGCTCCTCGCCGGCATCATCAATCACGGGTACGCGCGCTGGCAGGACATCCAGAATGACCCAAAGTATGCCATCCTGAATGAGCCCTTCAAGGGTGAGATTAACCGCGGCAACTTCCTGGAGATCAAGAACAAGTTCCTGGCCAGGAGGTTCAAGTTGCTGGAGCAGGCTCTGGTGATTGAGGAGCAGCTGCGCAGAGCTGCGTACCTGAACATGTCGGAGGACCCATCGCACCCCTCCATGGCCCTGAACACACGCTTCTCTGAGGTGGAGTGCCTGGCTGAGAGCCACCAGCACCTGTCCAAGGAGAGCATGTCCGGCAACAAGCCTGCCAATGCGGTCCTGCACAAAGTGTTGAAGCAGTTGGAGGAGTTGCTAAGCGACATGAAGGCTGATGTCACTCGTCTTCCGGCCACCATCGCCCGGATACCGCCTGTTGCCGTGAGACTGCAGATGTCTGAACGCAATATCCTCAGCCGATTGGCCAGCCGGGAAGACGACGCCATGCCCCCAGCCCTGACATAG
>TU12437
tctctctctctcttttttcagGCTTGCCCCAatctctttgtgtgtttgagtgagtgtgaaagagagagagagagagagagagaaaaaaaaaaagagggggagAGGTAGAGTTAGAGGTATAGAGCTAGGAgtcacagggaaaaaaaaacacgttttcCCGGATTGGATAAATAATTATTCTCCGTGATATAAGAAGAATATCATTCGAGGAAATTGGCTTTCTCACCCACGGGAGGAGAACACACCAGACCGGCTGACGTGATGTCAGGGACCGACGATGAGGGACAGGACTATGGAAGTTTGGACGACCGGGCCGTTTTACCAGACAATGAAGAGGACCTGGAGGAGGAACTATCGGAAGGCGATGCCCCCaaggtgaagaagaagaagaaagcaaagaagagccGAGAGAGCAAGACGGGCAAGCGAGCCAGACTGAGGAGAGAGG

Function

symbol description
chd4 Enables RNA polymerase II-specific DNA-binding transcription factor binding activity; histone deacetylase binding activity; and transcription coregulator binding activity. Contributes to nucleosomal DNA binding activity. Involved in chromatin remodeling. Located in centrosome; cytoplasm; and nucleoplasm. Part of NuRD complex and RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform X3

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004675 True 5268 mRNA 0.58 35 56450789 56482561
TU12437 False 448 TUCP 0.43 3 56480340 56484848

Neighbor

gene id symbol gene type direction distance location
AMCG00004676 NA coding downstream 7833 56424588 ~ 56442956 (-)
AMCG00004678 NA coding downstream 27883 56417056 ~ 56422906 (-)
AMCG00004677 NA coding downstream 36365 56410985 ~ 56414424 (-)
AMCG00004674 NA coding downstream 41498 56401461 ~ 56409291 (-)
AMCG00004671 NA coding downstream 237925 56185217 ~ 56212864 (-)
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding upstream 9808 56494656 ~ 56511693 (-)
AMCG00004684 NA coding upstream 168334 56653182 ~ 56655085 (-)
AMCG00004691 NA coding upstream 213473 56698321 ~ 56702513 (-)
AMCG00004693 NA coding upstream 220496 56705344 ~ 56705814 (-)
AMCG00004689 NA coding upstream 250995 56735843 ~ 56738249 (-)
G10061 NA non-coding downstream 96383 56353928 ~ 56354406 (-)
G10034 NA non-coding downstream 320231 56129442 ~ 56130558 (-)
G10007 NA non-coding downstream 381927 56066549 ~ 56068862 (-)
G9794 NA non-coding downstream 414840 56033498 ~ 56035949 (-)
G9751 NA non-coding downstream 552727 55897856 ~ 55898062 (-)
G10068 NA non-coding upstream 4720 56489568 ~ 56491763 (-)
G10073 NA non-coding upstream 30653 56515501 ~ 56516414 (-)
G10082 NA non-coding upstream 43768 56528616 ~ 57019807 (-)
G10093 NA non-coding upstream 121573 56606421 ~ 56647806 (-)
G10083 NA non-coding upstream 198289 56683137 ~ 56894619 (-)
AMCG00004672 NA other downstream 65919 56283994 ~ 56384870 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 341704 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 441923 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 556703 55889982 ~ 55894086 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other downstream 604618 55814402 ~ 55846171 (-)
AMCG00004685 NA other upstream 128179 56613027 ~ 56752935 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other upstream 200889 56685737 ~ 56690492 (-)
AMCG00004690 NA other upstream 205871 56690719 ~ 56691706 (-)
G10115 NA other upstream 262943 56747791 ~ 56750963 (-)
G10079 NA other upstream 287654 56772502 ~ 56775440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_04557814_04580168 CHD4, CHD4A coding CI01000319 null 4557657 ~ 4580168 (-)