AMCG00004690


Basic Information

Item Value
gene id AMCG00004690
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56690719 ~ 56691706 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004690
ATGTCTCAGAGCATGCTGTCAGGGGTGTGCAGCAGGGTGAGGATGCACGCGATCCCACTCCCAAAGCAGACGGACCGCTGGAATGAGAAGCGCAGTGTGTACGGGCTCTACGACAACGTAGGCATTCTGGgtaagagagggaggggaggtggagaggtggagagatggagggagcgAGAGGGAAAGACGGAAGGGGGCGACTTCAAGGCCCACCCCCGGGACCTGATTGTGGCCCCCCGTTGGCTGAAGGGATTCCGCGGCAACGAGCTGCAGCGCTGCATCAGGAAGAAGCAGATGGTGGGCGACCGCAtgatgacctctgacctccacAGTCTGGAGAAGAGAATTAGCTTCCTGTACCGGCACTTCAACCGATACGGGAaacacagatag
>TU12585
ctactactacaaatagtTGTCGTtgtcattatcatcatcatgatcCGAggttattgattattgattggTTATTGATTACCCAGGGGTGTGCAGCAGGGTGAGGATGCACGCGATCCCACTCCCAAAGCAGACGGACCGCTGGAATGAGAAGCGCAGTGTGTACGGGCTCTACGACAACGCGACTTCAAGGCCCACCCCCGGGACCTGATTGTGGCCCCCCGTTGGCTGAAGGGATTCCGCGGCAACGAGCTGCAGCGCTGCATCAGGAAGAAGCAGATGGTGGGCGACCGCAtgatgacctctgacctccacAGTCTGGAGAAGAGAATTAGCTTCCTGTACCGGCACTTCAACCGATACGGGAaacacagatagatagacaggaagtcagacagtcagtcagtcttttGTGCAATTGTTATTTGTTGGtgtgcttttgcttttgaataAAGAGGGTATACACATTCACTGTC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004690 False 393 mRNA 0.59 3 56690817 56691706
TU12585 True 473 lncRNA 0.51 2 56690719 56691448

Neighbor

gene id symbol gene type direction distance location
AMCG00004684 NA coding downstream 35634 56653182 ~ 56655085 (-)
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding downstream 179026 56494656 ~ 56511693 (-)
AMCG00004676 NA coding downstream 247763 56424588 ~ 56442956 (-)
AMCG00004678 NA coding downstream 267813 56417056 ~ 56422906 (-)
AMCG00004677 NA coding downstream 276295 56410985 ~ 56414424 (-)
AMCG00004691 NA coding upstream 6615 56698321 ~ 56702513 (-)
AMCG00004693 NA coding upstream 13638 56705344 ~ 56705814 (-)
AMCG00004689 NA coding upstream 44137 56735843 ~ 56738249 (-)
AMCG00004698 NA coding upstream 133315 56825021 ~ 56836934 (-)
AMCG00004699 NA coding upstream 154977 56846683 ~ 56853046 (-)
G10093 NA non-coding downstream 42913 56606421 ~ 56647806 (-)
G10073 NA non-coding downstream 174305 56515501 ~ 56516414 (-)
G10068 NA non-coding downstream 198956 56489568 ~ 56491763 (-)
G10067 NA non-coding downstream 219293 56470522 ~ 56471426 (-)
G10061 NA non-coding downstream 336313 56353928 ~ 56354406 (-)
G10108 NA non-coding upstream 20683 56712389 ~ 56714188 (-)
G10116 NA non-coding upstream 61319 56753025 ~ 56754391 (-)
G10084 NA non-coding upstream 70339 56762045 ~ 56820786 (-)
G10135 NA non-coding upstream 168631 56860337 ~ 56861643 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other downstream 227 56685737 ~ 56690492 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other downstream 205871 56450789 ~ 56484848 (-)
AMCG00004672 NA other downstream 305849 56283994 ~ 56384870 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 581634 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 681853 56006051 ~ 56008866 (-)
G10115 NA other upstream 56085 56747791 ~ 56750963 (-)
G10079 NA other upstream 80796 56772502 ~ 56775440 (-)
G10121 NA other upstream 85420 56777126 ~ 56778469 (-)
G10123 NA other upstream 97046 56788752 ~ 56792161 (-)
G10157 NA other upstream 333831 57025537 ~ 57028915 (-)

Expression


Co-expression Network