AMCG00004692 (LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584)


Basic Information

Item Value
gene id AMCG00004692
gene name LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56685737 ~ 56690492 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004692
tctctctctctctcactatccAAGACCCGCAACTCCAGTTTAATAGAGGAAAGCCAGCGAGCCGGCTCGTCCGCTCAGTCCCAAAAGCGAGGTGACCGACCGCTGTAAAAGAACGGCGGAGACCCACAAGGAAggacagacagaggcagagagacagactgactgacggTCAGAcggagggagacagacagactgacggACAGAcggagggagacagacagactgacggACAGACGGAGGGAGACGGGGCTGGAGTGCGTTAGTGCGCTCACAGTGCGCATAGTTcgctttcttcttcttcgttTTCCGATTTGGGGATTggaattgattttgtttgatttgttggCGTTTTGCTGTTGATGTGCATTGTGGATTACAAGCCCAACAAACGTTATAAAACAGTTTGGGCCGATTTTATGCTATATAGCTTATACTAAAAACGCGTCGCGTCACTATTGACAACAGCctcctattctctctctctctctctctctctctctctctctctctctctctctctctctctcggataCTTCCCGCTCGCATCCACTGCGTCagcctctctctcgctctccctctccatccctctttctttctctctctctccccactgcGGTTGCGACCAAAAACTGCAGTCTTTGCATTTCTTACCTGCCtatctgtctccctctccctctggcTCTTTCCCCCCTCCTTTCTTCTCCTCTTTTTCGTGGTGTGTTCtagtctttctttctctccttgaattctctctctctcggaatTCGACCTTCCGCACCTCAACCACAGAACCATGTCAGCCCCGGCCCCCGCCCCTGATGCCACGGCCCCCCCTGCTGGGCCCCCGGGAGCCCCAGGAGGAGAAGGGGCCCCCCCAGGACCCCCCAACCTGTCCAGCAACCGCAGGCTACAGCAGACACAGGCGCAAgtggaagagAAGCTGTCCGAGCTGGACGACCGGGCCGATGCCTTGCAGGCCGGAGCCTCGCAGTTCGAGAGTAGCGCTGCCAAGCTCAAGAGGAAGTACTGGTGGAAGAACTGCAAGtcatttt
>TU12583
GGAGTGAGATGGGGGGGAGGGAAGACAGGATAGTAAATTAGTGAAATAAttgggagatggagagatcagaaaCTAGCATAGTCAACAGTCagtgactgagtgtgtgtgtctctactGCAGTGCGCCCGAGAGAGATCTGCAGTACTGcaagaaagagggagggagagagagtagCGATGTGTGCTGCGCCGTCCCTTCCAAAACAAACGCGCTGCATacagatagagggagagggggactTACGCATAACTGCGGTATACTGGGGTATTACCGACAGACACGCACactgccccacccccacctctctctctctctctctctcactatccAAGACCCGCAACTCCAGTTTAATAGAGGAAAGCCAGCGAGCCGGCTCGTCCGCTCAGTCCCAAAAGCGAGGTGACCGACCGCTGTAAAAGAACGGCGGAGACCCACAAGGAAggacagacagaggcagagagacagactgactgacggTCAGAcggagggagacagacagactgacggACAGAcggagggagacagacagactgacggACAGACGGAGGGAGACGGGGCTGGAGTGCGTTAGTGCGCTCACAGTGCGCATAGTTcgctttcttcttcttcgttTTCCGATTTGGGGATTggaattgattttgtttgatttgttggCGTTTTGCTGTTGATGTGCATTGTGGATTACAAGCCCAACAAACGTTATAAAACAGTTTGGGCCGATTTTATGCTATATAGCTTATACTAAAAACGCGTCGCGTCACTATTGACAACAGCctcctattctctctctctctctctctctctctctctctctctctctctctctctctctctcggataCTTCCCGCTCGCATCCACTGCGTCagcctctctctcgctctccctctccatccctctttctttctctctctctccccactgcGGTTGCGACCAAAAACTGCAGTCTTTGCATTTCTTACCTGCCtatctgtctccctctccctctggcTCTTTCCCCCCTCCTTTCTTCTCCTCTTTTTCGTGGTGTGTTCtagtctttctttctctccttgaattctctctctctcggaatTCGACCTTCCGCACCTCAACCACAGAACCATGTCAGCCCCGGCCCCCGCCCCTGATGCCACGGCCCCCCCTGCTGGGCCCCCGGGAGCCCCAGGAGGAGAAGGGGCCCCCCCAGGACCCCCCAACCTGTCCAGCAACCGCAGGCTACAGCAGACACAGGCGCAAgtggaagagGTGGTGGACATCATGCGGGTGAACGTGGATAAGGTCCTGGAGCGTGATCAGAAGCTGTCCGAGCTGGACGACCGGGCCGATGCCTTGCAGGCCGGAGCCTCGCAGTTCGAGAGTAGCGCTGCCAAGCTCAAGAGGAAGTACTGGTGGAAGAACTGCAAGatgatgattatgatggGAGTAATTTGTGCGATCGTTGTTGGCATTATTTTTCTCTATTTCTTCACTTGAGCTCTTTTTCCAAAGCCAAAGACAAACAGAGCGAACGACAGGGCGAGAGAGTGAAGGAGGacaagaggaagaggaagacaaCGACAAAGGACAAAACTCCGCCTCCTCCGCCATTCCCATCATCTCCCACCGCCATCcacatccctccctccctcctctccctctctctgtttctctcagtAGAGTGTTAGGATAGTATAGTGTACAGTCAGTGTGCCTGTATTAACcttcctctctctatctctctccctccctctctctctttctccctcccgcTTACTTTTGTGTCTCCATCCTATTGTGTGACAGTatcagagaaaaagagagaaagagaaggaacgTATGTATACAGTTATACATGACTTATATggagtaataacaataataattttgtgattgtacattttagtcattttagattctcatttatttatttatttatttatttatttatttatttattttgtttcgaATTGATACACAACAATGTTTAGAAATTATAGCATTTcaaattctttaaaataattcctgtTTATGCAAGCAGTAACTGGAGCCACTATACTATATCATAGTCAGAGTACAGACactatactgtatacatacacttgtactgtatatatatatatatatatatatatatatatacctatactGTACTTTATAAGGTACATTATAGTTAAGTTTATAGGAgttgaattgtattatattacagaTGTAAAGATGTTAGAATaccctctctctatatatttatctctctccctctctccccctatatatatagagagagggggagagggggagagagagatacagaatatatatatatatatatatatatatatatattctatttattgtgtgtgtgttacagggaATTGTTCTGTGTCAGAGgtggagagggaaggaggggggaGAAGAGAATGAGTGACaggagagaagaagaaagagagagagagacagacacca

Function

NR:

description
vesicle-associated membrane protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004692 False 1052 mRNA 0.55 4 56686287 56690184
TU12583 True 2439 TUCP 0.47 5 56685737 56690492

Neighbor

gene id symbol gene type direction distance location
AMCG00004684 NA coding downstream 30652 56653182 ~ 56655085 (-)
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding downstream 174044 56494656 ~ 56511693 (-)
AMCG00004676 NA coding downstream 242781 56424588 ~ 56442956 (-)
AMCG00004678 NA coding downstream 262831 56417056 ~ 56422906 (-)
AMCG00004677 NA coding downstream 271313 56410985 ~ 56414424 (-)
AMCG00004691 NA coding upstream 7829 56698321 ~ 56702513 (-)
AMCG00004693 NA coding upstream 14852 56705344 ~ 56705814 (-)
AMCG00004689 NA coding upstream 45351 56735843 ~ 56738249 (-)
AMCG00004698 NA coding upstream 134529 56825021 ~ 56836934 (-)
AMCG00004699 NA coding upstream 156191 56846683 ~ 56853046 (-)
G10093 NA non-coding downstream 37931 56606421 ~ 56647806 (-)
G10073 NA non-coding downstream 169323 56515501 ~ 56516414 (-)
G10068 NA non-coding downstream 193974 56489568 ~ 56491763 (-)
G10067 NA non-coding downstream 214311 56470522 ~ 56471426 (-)
G10061 NA non-coding downstream 331331 56353928 ~ 56354406 (-)
G10108 NA non-coding upstream 21897 56712389 ~ 56714188 (-)
G10116 NA non-coding upstream 62533 56753025 ~ 56754391 (-)
G10084 NA non-coding upstream 71553 56762045 ~ 56820786 (-)
G10135 NA non-coding upstream 169845 56860337 ~ 56861643 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other downstream 200889 56450789 ~ 56484848 (-)
AMCG00004672 NA other downstream 300867 56283994 ~ 56384870 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 576652 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 676871 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 791651 55889982 ~ 55894086 (-)
AMCG00004690 NA other upstream 227 56690719 ~ 56691706 (-)
G10115 NA other upstream 57299 56747791 ~ 56750963 (-)
G10079 NA other upstream 82010 56772502 ~ 56775440 (-)
G10121 NA other upstream 86634 56777126 ~ 56778469 (-)
G10123 NA other upstream 98260 56788752 ~ 56792161 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G436932 NA unknown CI01000306 null 11082988 ~ 11098376 (+)