XLOC_005983 (col17a1b)


Basic Information

Item Value
gene id XLOC_005983
gene name col17a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24750078 ~ 24779692 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011818
AGTTACTGACGCACAGATAAATCAAGCCACACCTGTGTTCACCTGAACATGCCCTACAGTTTTAGTTAGCTGGAACATAAAGGATCAAAATTGCGATTCCCGAGGGTATTGTCTTCTTTAAAGCTCTGTCTGTGTGTATACCTGCCAGAAGACAGGGGAGTGGCTCGATATAAAATCCGACCCAGGAGTCCTGTGGAGACTTGCCTGTCAAAGCAGGGGGAAAATCAGCAAGAAAACGGCAGGTAACAACAGTCATGCTGCACAGGTGAAGTTCACAGCCAGCTCTTCAGTGGACTTATCTGCCTTCCAGAGAGGATAAATCTTTCTCTTCACAATCTTAGAACTAAAAAGtATGGGATGGACGATTTAAGACACCAAAGAAACTATACCGGAGGGAGTTTAGGAGACAGAGGCTTCACTGAAACAACAATCTCTACTTCTAGAGTCACATCTTTACCTCCTCGAGGCTTCAGTTCATCCACCAACAAGGGCATGTCAAGCAGCTCTGGCTCTCCAAGCCTGCTGGAGAAAAACATTTTGACACAAAACAACAGCGGCTCCTTTTTCTCATCATCATCTGTGGGTGGGAGTGGGAGTGCAGGTGGGTTCGGCTCAGGATCAGGAGAGTTTCTGCTAGAGGACTCGTCTGTGAGTAAGAGCAGGACAGCAGGCGGCTCCTCTGGAGTTTTTGAGAGCGTCTCTGGCTCAGTATCCAGCCCGCGGGTGAGATCCAGCTCCACTGAAGGCATAAGAAGAACACAAGACTCCAAAAGCAAAAGCACTCATTCACGTCGATATGATGGAAGCTCAAGTGACAGCTCATCCCCAGAGCTCTCAAGAAAAGAGTATGGTTCATCTAGAGGAAGGAGTCAAAGCAGGGAGACAGAAATCAGGACCAGACTACAGAGCGCATCTCCCTCAACTAGATGGACGGAGCTGGATGATGTAAAGAAGTTGTTGAAGACCTCTCGCTCCGCTAGCGTCAGCCCCACACGATCACCCTCCTCATCCCCTCTGCCAATCCCACGCAAGGCTACCACCTTAGACACCAAGACCTCCAGCAAACAAGTGGAGCAATACGACAGCAGTTTTCTCGAAGCAGATCTGGCCTCATACACCTGGAACAGCTCCACACTACCCTCTGCAGTCTCCACTGGCACCGCCACTGCTTATGGCTTTCAAAGTAACACCAACAATATGGCAACTGGAGCTTCACTGATCAGCAGCAGCACATCCCCATCCTCCTTATCAGTCTATGGCTTCCACAATAATTTAGCTCCTTCCACTGGAGTCCTAACGTCCAGCGGAGTTAACACACAATCAGgATATGGAGTGCAGAAGAATTATTCCTCAAGTCCAGACAGCACTCTTGCAGTCAGCACAGGCATCTCCACTGCAGGTTATGGAGTGCAGAAGAATTATTCCACAAGTCCAAACAGCACTCTTGCAGTCAGCACAGGAGTCTCCACTGCAgGTTATGGAGTGCAGAAGAATTATTCCTCAAGTCCAAACAGCACTCTTGCAGTCGGCAAAGGAGTCTCCACTGCAGGAACTGGTTCAAGGACATTTAATGAGAATGTGTCGAAGAGATACCTGGTGATGGACAAGGAAAACATTCCAGCGAAGAGAGAAACTGACGAACTGATCCTGACCAAAGACAGTGGCAAACTTTTTAGCAACAGCGCCGCCAACGGGTCAGCAGATTCATATTCAGATGTTTCGGTGAAGAAAGAGACCCTGATGACCAGCTATTCCGAAAGTGCTCCTATCAAGTCTTATTCTGGCACACAATATGGATCTGCATCAGTGTCAACAAAAGATAAAGCTACATATGCAGAGATCCACAAAGCAAAGCTTGAGGACGAGGAGGACGACTGTAAGTGTGGAGGGGGTCTGTGTGGTTGTGGCCCGAACTGCTGCTCTTGGTGGAAGTGGCTGCTGGGCTTTTTGCTCGGACTCCTGCTGCTCCTCGGCCTTCTGTTTGGACTCATTGCTTTATCTGAGGAGGTAAAGAAGCTCAAGTCTCGTGTCAGCACTCTTGAGGCAATGTCCTCCTCCATGAATGCCCACACAAGCCGTCTGTCAGCTCCAATTGATGGCATTGATGAGGTTGGAAGTAAAGCGGCGTATGTGAATTCACTGGATTCTGCGGTTAATTCAGACAACATTGGACTGCAGAGAAATGTGCAGCAAATAGTGAGAGCAGAGATGCAGTCCGAACAAATGAGAGCCTACCTTGCTTCTTCTGTCAAAGCTGAAAGAGGACTTCCAGGGCCTAAAGGTGACTCTGGATCTCCAGGAACTAGGGGTTTGTATAGATTTAAAACTGTCTGTTTGCAAATTCATTGA
>TCONS_00011819
AGACAGAAATCAGGACCAGACTACAGAGCGCATCTCCCTCAACTAGATGGACGGAGCTGGATGATGTAAAGAAGTTGTTGAAGACCTCTCGCTCCGCTAGCGTCAGCCCCACACGATCACCCTCCTCATCCCCTCTGCCAATCCCACGCAAGGCTACCACCTTAGACACCAAGACCTCCAGCAAACAAGTGGAGCAATACGACAGCAGTTTTCTCGAAGCAGATCTGGCCTCATACACCTGGAACAGCTCCACACTACCCTCTGCAGTCTCCACTGGCACCGCCACTGCTTATGGCTTTCAAAGTAACACCAACAATATGGCAACTGGAGCTTCACTGATCAGCAGCAGCACATCCCCATCCTCCTTATCAGTCTATGGCTTCCACAATAATTTAGCTCCTTCCACTGGAGTCCTAACGTCCAGCGGAGTTAACACACAATCAGgATATGGAGTGCAGAAGAATTATTCCTCAAGTCCAGACAGCACTCTTGCAGTCAGCACAGGCATCTCCACTGCAGGTTATGGAGTGCAGAAGAATTATTCCACAAGTCCAAACAGCACTCTTGCAGTCAGCACAGGAGTCTCCACTGCAgGTTATGGAGTGCAGAAGAATTATTCCTCAAGTCCAAACAGCACTCTTGCAGTCGGCAAAGGAGTCTCCACTGCAGGAACTGGTTCAAGGACATTTAATGAGAATGTGTCGAAGAGATACCTGGTGATGGACAAGGAAAACATTCCAGCGAAGAGAGAAACTGACGAACTGATCCTGACCAAAGACAGTGGCAAACTTTTTAGCAACAGCGCCGCCAACGGGTCAGCAGATTCATATTCAGATGTTTCGGTGAAGAAAGAGACCCTGATGACCAGCTATTCCGAAAGTGCTCCTATCAAGTCTTATTCTGGCACACAATATGGATCTGCATCAGTGTCAACAAAAGATAAAGCTACATATGCAGAGATCCACAAAGCAAAGCTTGAGGACGAGGAGGACGACTGTAAGTGTGGAGGGGGTCTGTGTGGTTGTGGCCCGAACTGCTGCTCTTGGTGGAAGTGGCTGCTGGGCTTTTTGCTCGGACTCCTGCTGCTCCTCGGCCTTCTGTTTGGACTCATTGCTTTATCTGAGGAGGTAAAGAAGCTCAAGTCTCGTGTCAGCACTCTTGAGGCAATGTCCTCCTCCATGAATGCCCACACAAGCCGTCTGTCAGCTCCAATTGATGGCATTGATGAGGTTGGAAGTAAAGCGGCGTATGTGAATTCACTGGATTCTGCGGTTAATTCAGACAACATTGGACTGCAGAGAAATGTGCAGCAAATAGTGAGAGCAGAGATGCAGTCCGAACAAATGAGAGCCTACCTTGCTTCTTCTGTCAAAGCTGAAAGAGGACTTCCAGGGCCTAAAGGTGACTCTGGATCTCCAGGAACTAGGGGAGACAACGGTTTTCCAGGGATACCAGGTCCACCAGGAATGCCAGGACATTCAGGAAGGGACGGACAAAAAGGAGAAAAAGGAAGTGCAGGTGAACATGGTGCAGAAGGATTCAGGGGAAGAGATGGTCAGCCTGGACCTCGTGGAGAGCCTGGGCCCCCAGGAGCCGGAGAGAAGGGTGAAAGGGGTAGTCCTGGCCTTCCTGGTCTCATTGGTCCACCTGGGGCAAAAGGCTCTAGTGGTTTACATGgTGAACAAGGCCCTCAAGGCTTCAGAGGAGAGCCTGGTCCTGCTGGGCCAAAAGGTGATAGAGGACTTCCTGGTCTACCTGGaattaaagGTGATCATGGCGATAGAGGAGAGAATGGGTTGCCAGGCATTCCTGGAGTTGTAGGACGACAAGGACCAGCTGGAGAGAAAGGAGATAAAGGATCTGCAGGGCCTCAAGGAGCTGATGGTGAAAAGGGTCAGAGAGGTGAGCCAGGATCAATTGGCTTACCAGGAATCAGAGGACCACCTGGGCCACATGGTGATCCTGGTCAATCAGGAGCCCCAGGGATTCAAGGACCTCCAGGCCTACCTGGCAATCCTGGTCAGCCTGGACCTAAAGGTGAAACTGGTGAGGCTGGAAGAGTGATCAATGCAGCAGGTTCCACCTCAGTGGCAATCCCAGGACCGCCTGGGAGCGCTGGTCCTCCTGGCCCACCTGGATCTCCAGGACTCTCAGGTCCTGTTGGCCCTGCTGGACTTCCTGGTCCCCCTGGTGTTAAAGGTGATAAGGGAGATCAAGGAGAGCCAGGTATTGGTGTGAACACTGGTGAGACTTTGGTTTCAACCAGAGCAGAAAGACAGTATGGTGCTGTTAATGTTGGTGGTACTGGACTACCTGGTCCTCCTGGTCCACCAGGGCCCCCTGGACGTCCAGGGGATTCCAGACCAGGTCCACCAGGACCACCTGGTGAGCCAGGATATGGCAGACCTGGTCCTAAAGGAGAAAAGGGAGAGCCAGGAAACTTTGTGCCTAATTCAGGCACATTTTTTGCAGGACCACCTGGGCCGCCAGGGCCCACAGGGCCTAAAGGACCAACGGGTCCCCAAGGTCCACGAGGATACACAGGAGAACCAGGACAGCCTGGCCTTCCAGGGAGTTCCGGAAGAGTTATTTCTGAGTATGGTGTGGCTCAAGGGCCACCTGGTCCCCCAGGACCTCCTGGACCACCCGGTCGAGAAGGCCGTAAAGGAGATCCGGGAGTACCAGGTACTTCTACCTTCCAAGGAGAGTCAAGAGTTGCAGCTACACACCAGGGACGGCCTGGTCCTCCGGGACCTCCAGGTCCACCAGGTGCTCCAGGTCAATCCAGTGGATCTGCTGCAGATTATCGTCGTTACATCATGGAGTATATGCAGAGTGGCAGCATGAGGCAGCATTTGTCTGGTATTCAAGGGCCGCCTGGTCCACCTGGGGCTTCAGTGTCAGTAGAGGATGTGGCATCTCGGGTCATAGCTTACATTCAGCGCTCTGGAATCAGTGGTGGCAGCATTAGCCAAAGTGCTCAAGGTCCTCAAGGTCCCCCAGGACCTCCTGGTCCACCTGGAAGCATAACTGCTGATTACATCATATCACTTTTACAGAGAGATGATGTAAGGCGTTATGTTGCTGGACCTCCAGGGCCACCAGGTTCACCGGGGATTAGTGGTAGTTCCTTTAACACACAGGAAGTTGCAAACTATGTCATGAGAATGATGAATGAACAGGGAATGATAGGCAGAGCTGGACCaccaggccctccaggaccaccTGGCCAGCCTGGTGCCACCTACAGTGACATAACTGCTCTGATTCAGAGGTCAGGGATTGGTGGAAGCATTGGACGTCCAGGGCCTCCTGGTCCTATGGGACCACCTGGTCCACCCGGTGCCTCAGGAGGCAGTTCCTCTGCAGTCTCAGGTTATTCACTAGAGGACATCCAGCGCTACCTGCAAAAATCTGGTTTTAGGGGACCTCCAGGCCTACCTGGTCCAGCAGGACCCCAGGGTCCTCCAGGAGACACAAGGAGCCTTGTATCATATACAGGATCTTCTGCTCGAGAACAGATCCGTACTGAACTGCAGGACTACCTAAACAGTGACACTATGAGGCGCTATGTCCAAGGGCCACCTGGGCTGCCTGGACCCCCTGGTCAGAAGGGTGACCGTGGTGAACCTGGGTACAGTTATCAAAATGGCAGAAACCAATATCGCTATGGCACTGAAATCAGTGAACCAGTGGACTACTCCAATGTTGCACTAAAAGTGACTGATTACATTAAGGATCAAGGTCTGCTGCAGGACCTGACAGAGGGATACTGGAGGTCACAAGCAGGAAGCATTCAAGGACCCGCTGGGCCTCCTGGTCCTCCTGGCCCACCCGGGTACAGCCGTGTGATTGGTGCCTATGGGAACGTGACAGCTGATCTCATGGACTTCTTTAGAAcatatGGGACAATCCCAGGGCCCCCTGGCAGGTCAGGGCCCAAAGGAGAAAGAGGATATCCAGGACCTAAAGGAAATAAAGGGGACACAGGGAGCTCGGGGATACCTGGCCTACCAGGACAAAGAGGACCTGAGGGACCAAGGGGAGAAAAGGGTGAAAAAGGAGAGATCCAGACTGGCAGATGGATACGAGCAAACGGCGTGTAAAGGCTCAAGGATTTGCTGAAGCACAATTTTGTGGATGCACTGACAGCATAAAAGAAATTGTTCATGTTTTTAAGAAGATAAATGGATAAACTAGTCTCTCTTTATGAAGTAATGCAGCTTAGAGGCTTGTTTGGTACTTATTTACCACAATATACAGTTTTATAATCAAACAAATGCATGCAAAATAATAATCCATACATTCAAAACTACTTCCAGGTTGACAACAATTATTTGTCttcattatataatatttaattcattGTAGCACTTAAAATGTATACTTGTCACCCAATAGTGGGCTTTGTagttgtattattactattattattttttttgttttgtactgtacaattttttttctatgaAACAAAAAATGTACCTTAAACAGCTGAGATTGTTTTAAACGTACCAAATAAAGATCCATTCA
>TCONS_00011820
TCTATGGCTTCCACAATAATTTAGCTCCTTCCACTGGAGTCCTAACGTCCAGCGGAGTTAACACACAATCAGgATATGGAGTGCAGAAGAATTATTCCTCAAGTCCAGACAGCACTCTTGCAGTCAGCACAGGCATCTCCACTGCAGGTTATGGAGTGCAGAAGAATTATTCCTCAAGTCCAAACAGCACTCTTGCAGTCGGCAAAGGAGTCTCCACTGCAGGAACTGGTTCAAGGACATTTAATGAGAATGTGTCGAAGAGATACCTGGTGATGGACAAGGAAAACATTCCAGCGAAGAGAGAAACTGACGAACTGATCCTGACCAAAGACAGTGGCAAACTTTTTAGCAACAGCGCCGCCAACGGGTCAGCAGATTCATATTCAGATGTTTCGGTGAAGAAAGAGACCCTGATGACCAGCTATTCCGAAAGTGCTCCTATCAAGTCTTATTCTGGCACACAATATGGATCTGCATCAGTGTCAACAAAAGATAAAGCTACATATGCAG

Function

symbol description
col17a1b Predicted to be an extracellular matrix structural constituent. Acts upstream of or within lateral line system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in hypodermis; lateral line; and neuromast. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0048925 lateral line system development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7145 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within lateral line system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in hypodermis; lateral line; and neuromast. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain).

Ensembl:

ensembl_id ENSDARG00000079011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011818 False 2349 mRNA 0.48 21 24750078 24764446
TCONS_00011819 False 4533 mRNA 0.51 51 24755049 24779692
TCONS_00011820 True 510 mRNA 0.45 6 24756486 24762229

Neighbor

gene id symbol gene type direction distance location
XLOC_005982 cfap43 coding upstream 6927 24717880 ~ 24743151 (+)
XLOC_005981 zgc:66426 coding upstream 61956 24679674 ~ 24688122 (+)
XLOC_005980 adam8a coding upstream 70442 24671481 ~ 24679636 (+)
XLOC_005979 msx3 coding upstream 85410 24662238 ~ 24664668 (+)
XLOC_005978 NA coding upstream 100139 24597665 ~ 24649939 (+)
XLOC_005984 AL929005.1 coding downstream 49061 24828753 ~ 24828869 (+)
XLOC_005985 si:ch211-223p8.8 coding downstream 50304 24829996 ~ 24830717 (+)
XLOC_005986 zgc:153981 coding downstream 54507 24834199 ~ 24837977 (+)
XLOC_005987 dusp13a coding downstream 63165 24842857 ~ 24850812 (+)
XLOC_005988 si:dkey-24f15.2 coding downstream 71410 24851102 ~ 24854662 (+)
XLOC_005975 NA non-coding upstream 177150 24570620 ~ 24572928 (+)
XLOC_005962 CR352246.1 non-coding upstream 928778 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1339568 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1509501 23227531 ~ 23240577 (+)
XLOC_005997 BX530079.1 non-coding downstream 664292 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 990307 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1164587 25944279 ~ 25961369 (+)
XLOC_006008 NA non-coding downstream 1186035 25965727 ~ 25983365 (+)

Expression


Co-expression Network