XLOC_005988 (si:dkey-24f15.2)


Basic Information

Item Value
gene id XLOC_005988
gene name si:dkey-24f15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24851102 ~ 24854662 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011825
ATGTATGAGACACCATCTATATCTGATCTGCGGGGTCTGCTATGGTCAAACAGACAGCCTTTTGGACCAGTCAGTCTTATCTGGCCCAGTCTGTTCATCGGAGATGAGTCAACTGCTCGTGATAAAGCACTCCTCGCCGGGCTGGGAATCACTCATGTTGTAAACTGTGCCGATGGAGCGCATCGCATCAACACAGGCGCTCAGTTCTACTCAGACATGAGTATCAGTTACTGTGGAGTCGAGGCTGCAGATCACCCACAGTTTGATTTGAGCCAGTATTTCAGCTCCACTGCATCCTTCATTAAAGCCGCTCTCACTCCAAATGGCAAGTCTGACTTCTTTGACCTTTTGCTGACTAATTTTGTCAGCGATTGTACAAAAACTAGAATAAGCTGCAGAGCAAAAGAATAAATGGAGCGGCGCAGAGGCAGCGGGCGATACAGTCGTTTTTAATAAGTGAAATATGTAAATTCGAGCCAGTGTCAGAGATGCGGATTAAGTTCTCTGTTCTGCAGGTAAAGTGCTGGTCCACTGTGCAATGGGAGTCAGTCGCTCTGGAGCTTTGGTCCTGGCCTTCCTCATGATGTGTGAAAACCTGACGCTTACAGACGCCATTATCGCTGTCAGACTGAACAGAGATATCTGTCCCAACTCAGGCTTTCTAAAGCAGCTCAGAGCTCTGGACAAACATTTGAGGAGCTGAACATCAGCCATCGATTTAAACACCATTATGCTGTTTAATGTATCTCATGAGCACATGTGACTATTTTATGTAATGTCagaaaagtgacttttttttttattttttatttttttacaaatttaaacaatttaaatgatGTGAAAATTAAGGATTTTTAAAAGGAGTCATGCAGGCAAACCCCACCTCTTATTGGGGGATGAATGTATcatattaaaatctataaatgagATCTCACAAAttaaaattagccactaaatcaaaaagttacgaactgctgtgagtttgtatttttattcaaaccTCCAAATCCAGTCATGTAAATATCTAATAATTATTATACTACAAAATGAGTAATGAAggtgtacagtatatatactctatttgaacaaaacatttgttttggtaTGTAAGCTAATTCAGTGTTGCTTTTACTGTGCAGAACTTAAAGCCACAGTGTGTAAATTGTACCTCTAGGCATGTATTCACAAC
>TCONS_00011826
GTCAACTGCTCGTGATAAAGCACTCCTCGCCGGGCTGGGAATCACTCATGTTGTAAACTGTGCCGATGGAGCGCATCGCATCAACACAGGCGCTCAGTTCTACTCAGACATGAGTATCAGTTACTGTGGAGTCGAGGCTGCAGATCACCCACAGTTTGATTTGAGCCAGTATTTCAGCTCCACTGCATCCTTCATTAAAGCCGCTCTCACTCCAAATGGTAAAGTGCTGGTCCACTGTGCAATGGGAGTCAGTCGCTCTGGAGCTTTGGTCCTGGCCTTCCTCATGATGTGTGAAAACCTGACGCTTACAGACGCCATTATCGCTGTCAGACTGAACAGAGATATCTGTCCCAACTCAGGCTTTCTAAAGCAGCTCAGAGCTCTGGACAAACATTTGAGGAGCTGA

Function

symbol description
si:dkey-24f15.2 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011825 False 1192 mRNA 0.40 2 24851102 24854662
TCONS_00011826 True 406 mRNA 0.50 2 24853578 24854173

Neighbor

gene id symbol gene type direction distance location
XLOC_005987 dusp13a coding upstream 290 24842857 ~ 24850812 (+)
XLOC_005986 zgc:153981 coding upstream 13125 24834199 ~ 24837977 (+)
XLOC_005985 si:ch211-223p8.8 coding upstream 20385 24829996 ~ 24830717 (+)
XLOC_005984 AL929005.1 coding upstream 22233 24828753 ~ 24828869 (+)
XLOC_005983 col17a1b coding upstream 71410 24750078 ~ 24779692 (+)
XLOC_005989 ap3m1 coding downstream 345187 25199849 ~ 25209083 (+)
XLOC_005990 chuk coding downstream 431876 25286538 ~ 25379820 (+)
XLOC_005991 gsto1 coding downstream 525770 25380432 ~ 25389051 (+)
XLOC_005992 gsto2 coding downstream 542234 25396896 ~ 25402772 (+)
XLOC_005993 calhm3 coding downstream 555932 25410594 ~ 25411902 (+)
XLOC_005978 NA non-coding upstream 201163 24597665 ~ 24649939 (+)
XLOC_005975 NA non-coding upstream 278174 24570620 ~ 24572928 (+)
XLOC_005962 CR352246.1 non-coding upstream 1029802 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1440592 23388493 ~ 23410510 (+)
XLOC_005997 BX530079.1 non-coding downstream 589322 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 915337 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1089617 25944279 ~ 25961369 (+)
XLOC_006008 NA non-coding downstream 1111065 25965727 ~ 25983365 (+)
XLOC_006009 NA non-coding downstream 1201795 26056457 ~ 26065264 (+)

Expression


Co-expression Network