XLOC_005989 (ap3m1)


Basic Information

Item Value
gene id XLOC_005989
gene name ap3m1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25199849 ~ 25209083 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011827
ACTACAGAGTGTCATAGCTGTCCCTGTGTTTTGCCAGAACAGAGAAATACATTCCTGTTATAAATTAAGCGTAGATTTGGACGCATCGACTGGGAAGGAGGAGTGACACATCTGCCACATTTGCAAGAGGGGGATATCGCATGAAAACATTGATCAAGACAGCTGTCTGCAGCGCTCATCATGATTCACAGCCTGTTCTTGATAAACAATGTTGGTGATTTATTCCTGGAGAAACACTGGAAGAGTGTCATAAGCCGCTCCGTCTGCGATTATTTCTTCGAAGCACGAGAGAAGGCAGGGGAACCGGACAATGTGCCTCCTGTCATCCGCACCCCTCATCACTATCTCATAAATATATACCGTGACAAGATCTTCTTCGTCTCCGTCATCCAAACGGAAGTGCCTCCGCTGTTTGTAATAGAATTTCTCCATCGGGTTGCAGAGACTTTTCAGgaTTATTTTGGAGAATGTTCTGAGACGACTATAAAAGAAAATATGGTAATAGTCTATGAGCTCCTAGAGGAAATGCTGGATAACGGTTTCCCCCTTGCCACAGAATCTAACATCTTAAAAGAGCTCATCAGACCTCCTAATATCCTGCG
>TCONS_00011828
ACTACAGAGTGTCATAGCTGTCCCTGTGTTTTGCCAGAACAGAGAAATACATTCCTGTTATAAATTAAGCGTAGATTTGGACGCATCGACTGGGAAGGAGGAGTGACACATCTGCCACATTTGCAAGAGGGGGATATCGCATGAAAACATTGATCAAGACAGCTGTCTGCAGCGCTCATCATGATTCACAGCCTGTTCTTGATAAACAATGTTGGTGATTTATTCCTGGAGAAACACTGGAAGAGTGTCATAAGCCGCTCCGTCTGCGATTATTTCTTCGAAGCACGAGAGAAGGCAGGGGAACCGGACAATGTGCCTCCTGTCATCCGCACCCCTCATCACTATCTCATAAATATATACCGTGACAAGATCTTCTTCGTCTCCGTCATCCAAACGGAAGTGCCTCCGCTGTTTGTAATAGAATTTCTCCATCGGGTTGCAGAGACTTTTCAGgaTTATTTTGGAGAATGTTCTGAGACGACTATAAAAGAAAATATGGTAATAGTCTATGAGCTCCTAGAGGAAATGCTGGATAACGGTTTCCCCCTTGCCACAGAATCTAACATCTTAAAAGAGCTCATCAGACCTCCTAATATCCTGCGCACAATGGTCAACACTATCACGGGTAGCAGTAATGTTGGCGAAACCCTTCCTACTGGCCAGCTTTCCACAATCCCGTGGAGAAGAGCCGGAGTGAAATATACCAATAACGAAGCTTACTTTGATGTGGTGGAGGAAATCGATGCCATCCTGGATAAGTCTGGAACTACGGTTTTCGCAGAAATCCAGGGAGTTATTGATGCTTGTGTGAAGCTCTCTGGAATGCCAGACCTTACTCTTTCATTTATGAACCCAAGACTCCTGGACGATGTGAGCTTCCATCCGTGTGTTCGTTATAAGAGATGGGAAAGTGAGAGAGTCATTTCCTTCATTCCGCCTGATGGAAACTTCCAGCTCATGTCGTATCACATCAGTGCACAAAATCTTGTAGCGATCCCAGTTTATGTGAAGCAAAACATCAGTTTCTTTGAGAGCGGGTCTTCAGGAAGACTGGACATCACTGTGAGCCCCAAGCAGACCATGGGGAAAGTTGTGGAGTGTGTGGTGGTGACTATACACATGCCTAAAGTGGTTCTCAGTGCCAGCCTCAATGCCACTCAGGGAACCTACAAATACGACCCGCTTACCAAGATTTTGGTGTGGGATATAGGTAAGCTTAATCCTCAGAATACCCAAAAGCAACCCAATCTGAAAGGAAGTCTAAGTCTGCAGTCTGGAGCTCCTAAACCGGAAGAGAACCCAAGTCTGAACATTGACCTGAAAATCCAGCAGTTAGCCATCTCAGGACTAAAGGTGAATCGTCTAGACATGTACGGAGAGAAATATAAACCGTTCAAAGGTGTGAAATATGTCACCAAAGCTGGGAAGTTTCAGGTCAGGACATGAGGACCCGGCTGCAGATCATCACAATCATATGCCAAAAGTTGATCAGAGGTGCCATTTCTCTAAATGACAAATCATGCAAGATTGCAACCGAGTACAATCTCCCTTATTTTTTACAGCATCGAAGTTACATTTGTTATCGTAATATTTATCGTTCTATATTTTATGGGAAGTAACTGGCAAGAAGTGAAAATCTCCACTGGAGAAAATTGGTAGAGTATTTTCTTTGGGAATCTTTATCTTCATATCAATAACATTCCATTAGTGTATCTGCTTAATGTCAGATAATCTACATCTCTGCCAGGAATGTTACAATTTACCATCTCAAAACCAAAATCtagaatatataatatacacaagCCTTCTTTTAtactttagttgttttttttgcatttcatttgGTTTAGCGGCCTTTGAATGGATAAAATACTTTAGGCCTCAAACAAAAAAATGGCCTTTCCTTAAAAGCACATGGCCATGTTTATACGCAATCTATTTCTTTACTACACAAGCACATTGCTGCTCAGAGGTCAGTGTTGCAGAAAATGTCCAAGTAAATGTACTTTAATGCTTAAAGTAGTTTCAGTTGTGAGCACAAGTGAAGAAATCACTGTCACACTGTCCTGCGGTCACACGGTAGATACTACATGTAGGTGTGAAGCTTTGAGGATGTGCACAGAAACACAACggcattattttttataaaatgtcaaGGGAATtgcttaaatgcattttaaaatatgtatttcaaCCAAAAGCCTTCAGATTTATAAAGTttgcaaataaaactttttttgtgtgtctttCACT
>TCONS_00011829
TGAAAACATTGATCAAGACAGCTGTCTGCAGCGCTCATCATGATTCACAGCCTGTTCTTGATAAACAATGTTGGTGATTTATTCCTGGAGAAACACTGGAAGAGTGTCATAAGCCGCTCCGTCTGCGATTATTTCTTCGAAGCACGAGAGAAGGCAGGGGAACCGGACAATGTGCCTCCTGTCATCCGCACCCCTCATCACTATCTCATAAATATATACCGTGACAAGATCTTCTTCGTCTCCGTCATCCAAACGGAAGTGCCTCCGCTGTTTGTAATAGAATTTCTCCATCGGGTTGCAGAGACTTTTCAGgaTTATTTTGGAGAATGTTCTGAGACGACTATAAAAGAAAATATGGTAATAGTCTATGAGCTCCTAGAGGAAATGCTGGATAACGGTTTCCCCCTTGCCACAGAATCTAACATCTTAAAAGAGCTCATCAGACCTCCTAATATCCTGCGCACAATGGTCAACACTATCACGGGTAGCAGTAATGTTGGCGAAACCCTTCCTACTGGCCAGCTTTCCACAATCCCGTGGAGAAGAGCCGGAGTGAAATATACCAATAACGAAGCTTACTTTGATGTGGTGGAGGAAATCGATGCCATCCTGGATAAGTCTGGAACTACGGTTTTCGCAGAAATCCAGGGAGTTATTGATGCTTGTGTGAAGCTCTCTGGAATGCCAGACCTTACTCTTTCATTTATGAACCCAAGACTCCTGGACGATGTGAGCTTCCATCCGTGTGTTCGTTATAAGAGATGGGAAAGTGAGAGAGTCATTTCCTTCATTCCGCCTGATGGAAACTTCCAGCTCATGTCGTATCACATCAGTGCACAAAATCTTGTAGCGATCCCAGTTTATGTGAAGCAAAACATCAGTTTCTTTGAGAGCGGGTCTTCAGGAAGACTGGACATCACTGTGAGCCCCAAGCAGACCATGGGGAAAGTTGTGGAGTGTGTGGTGGTGACTATACACATGCCTAAAGTGGTTCTCAGTGCCAGCCTCAATGCCACTCAGGGAACCTACAAATACGACCCGCTTACCAAGATTTTGGTGTGGGATATAGGTAAGCTTAATCCTCAGAATACCCAAAAGCAACCCAATCTGAAAGGAAGTCTAAGTCTGCAGTCTGGAGCTCCTAAACCGGAAGAGAACCCAAGTCTGAACATTGACCTGAAAATCCAGCAGTTAGCCATCTCAGGACTAAAGGTGAATCGTCTAGACATGTACGGAGAGAAATATAAACCGTTCAAAGGTGTGAAATATGTCACCAAAGCTGGGAAGTTTCAGGTCAGGACATGAGGACCCGGCTGCAGATCATCACAATCATATGCCAAAAGTTGATCAGAGGTGCCATTTCTCTAAATGACAAATCATGCAAGATTGCAACCGAGTACAATCTCCCTTATTTTTTACAGCATCGAAGTTACATTTGTTATCGTAATATTTATCGTTCTATATTTTATGGGAAGTAACTGGCAAGAAGTGAAAATCTCCACTGGAGAAAATTGGTAGAGTATTTTCTTTGGGAATCTTTATCTTCATATCAATAACATTCCATTAGTGTATCTGCTTAATGTCAGATAATCTACATCTCTGCCAGGAATGTTACAATTTACCATCTCAAAACCAAAATCtagaatatataatatacacaagCCTTCTTTTAtactttagttgttttttttgcatttcatttgGTTTAGCGGCCTTTGAATGGATAAAATACTTTAGGCCTCAAACAAAAAAATGGCCTTTCCTTAAAAGCACATGGCCATGTTTATACGCAATCTATTTCTTTACTACACAAGCACATTGCTGCTCAGAGGTCAGTGTTGCAGAAAATGTCCAAGTAAATGTACTTTAATGCTTAAAGTAGTTTCAGTTGTGAGCACAAGTGAAGAAATCACTGTCACACTGTCCTGCGGTCACACGGTAGATACTACATGTAGGTGTGAAGCTTTGAGGATGTGCACAGAAACACAACggcattattttttataaaatgtcaaGGGAATtgcttaaatgcattttaaaatatgtatttcaaCCAAAAGCCTTCAGATTTATAAAGTttgcaaataaaactttttttgtgtgtctttCACTAAT

Function

symbol description
ap3m1 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; polster; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human AP3M1 (adaptor related protein complex 3 subunit mu 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-021015-2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; polster; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human AP3M1 (adaptor related protein complex 3 subunit mu 1).

Ensembl:

ensembl_id ENSDARG00000029928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011827 False 602 mRNA 0.44 4 25199849 25204766
TCONS_00011828 False 2253 mRNA 0.41 10 25199849 25209080
TCONS_00011829 True 2115 mRNA 0.41 9 25200105 25209083

Neighbor

gene id symbol gene type direction distance location
XLOC_005988 si:dkey-24f15.2 coding upstream 345187 24851102 ~ 24854662 (+)
XLOC_005987 dusp13a coding upstream 349037 24842857 ~ 24850812 (+)
XLOC_005986 zgc:153981 coding upstream 361872 24834199 ~ 24837977 (+)
XLOC_005985 si:ch211-223p8.8 coding upstream 369132 24829996 ~ 24830717 (+)
XLOC_005984 AL929005.1 coding upstream 370980 24828753 ~ 24828869 (+)
XLOC_005990 chuk coding downstream 77455 25286538 ~ 25379820 (+)
XLOC_005991 gsto1 coding downstream 171349 25380432 ~ 25389051 (+)
XLOC_005992 gsto2 coding downstream 187813 25396896 ~ 25402772 (+)
XLOC_005993 calhm3 coding downstream 201511 25410594 ~ 25411902 (+)
XLOC_005994 calhm1 coding downstream 203224 25412307 ~ 25417915 (+)
XLOC_005978 NA non-coding upstream 549910 24597665 ~ 24649939 (+)
XLOC_005975 NA non-coding upstream 626921 24570620 ~ 24572928 (+)
XLOC_005962 CR352246.1 non-coding upstream 1378549 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1789339 23388493 ~ 23410510 (+)
XLOC_005997 BX530079.1 non-coding downstream 234901 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 560916 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 735196 25944279 ~ 25961369 (+)
XLOC_006008 NA non-coding downstream 756644 25965727 ~ 25983365 (+)
XLOC_006009 NA non-coding downstream 847374 26056457 ~ 26065264 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12215687_12218599 AP3M1 coding CI01000012 null 12215022 ~ 12218690 (-)
bowfin (Amia calva) AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding CM030139.1 CM030139.1 9494051 ~ 9508297 (+)