XLOC_005994 (calhm1)


Basic Information

Item Value
gene id XLOC_005994
gene name calhm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25412307 ~ 25417915 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011837
GTTTTAAATGATCAGTCATTACATAAATCTTTTGTCATTTAGATATACGTTTTCTctgaaaataaacaatttaagcaCTAGGCAAGGTGAGGACGGAAATCACACCCATCTATGTAGGTGAGGAAAGAGCCTGAAAAGGAGGGGCCATCTGTCAGTCATGTGCATTGATGCATTAAGTTGACAAGGTGAAGTTTCATCAGTGTGGCGGATTCAGCTTTGCTTTAGCAGTCTTTCTCTCTTCATTCTCTGACAAGGCAGAGTGAAATCCCGTTTTAAAAATGGATAAGTTTCGGATTATGGTCCAGTTTCTGCAAGCCAACCAAGAGTCCTTCATGAATGGCATCTGTGGCATCATGGCTCTGGCAAGTGCTCAGATGTATTCCTCATTTGAGTTTACATGCCCTTGCCTTCCAGACTACAATTATGCCTATGGCATCGGCATTCTCATCGTTCCGCCAATATGGTTCTTCTTACTTGGATATGTAATGAACAATAACATATCAGTGTTAACCGAAGAATGGAAGAGACCCGTTGGAAAGCGCAGCAAAGATCCGGCGGTATTGCGCTATATGTTCAGCTCCATGACGCAGCGCGCTCTCATCGCTCCGGCTGTATGGATAGCCGTGACTTTAATGGACGGCAAGAGCTTTTTGTGCGCCTTCAGTCCCACGGCGGATTTATCCGAGTTTGTCAACGAGAGCTATCAAAGCTTATCACAAAAAGAGCTTCTGAAAATTCAAGCAAAGATTCCGTGTAAAGACATATTTGAAGAGCATGAGATTATTTCCAGAGAAGCGGCCACTAGGTATATTCGCTGTTTGTCACAGgCATGCGGATGGACCTTTTTGATGGTTATAACTCTCGTAGCCTTCTTGGTAAGGGCAATAAGACCTTGTTTTACCCAAGCTGCTTTTCTAAAAACCAAATACTGGTCGCATTACATTGACACAGAGCGCAAACTATTTGACGAAACGTGCAAAGAGCACGCCAAGAGTTTCGCCAAAGTCTGCATACAGCAATACTTTGAGAGCATCAGTGGAGAAATTGTTTCACAGCTTCCACAGTCCCCTGCAAAGAAAGGGAAAGGTAATAAAGATGAGGATGGAGAAAAACAGAAGAGTGATGAGGAGAGGCTTCTAGGAATCCGAAAAGAAGGCGACATGAACAAAGTGCTCTGGAACTGGCATACATGTAAACCTCCGCTACTGCTGAGTAAACGCACTGAAGAAATGAATGGACATGCACACTTAGATACCCACAGCCTCACTGATGAGCGCCATACCAAAAAAAAAGCTGTGGTGTACTATTCCAAAGTCTGACCTGATGGtggtattttaaaaactgaatgaggCGCTTCACTGTGAAGATAGTTCTTTCTGCTATTGTATTTATTGCATGTCCTTTCATGTGACTCAACCGTTCATTTGATctattgtaaacatattgtttatTTCCATAAAGAGAGCATAAATAATAGGATAAAACAAGATTAGTAACTCAACTAAGGTGTGAccaaagttataataataatgatacaatgATTATGATGATCTTGCTGCTGATATGATGAGTATACCACTTTTTATTTCTCGTTTGCAACAAAATGAATCGAACTAAatttaagttggcggttcattccactgtggcgacccctgatgaataaagggactaagtcgaagaaaaaatgaataaataaaatttaatttataggTAAATTTCAATAAACATAAGTTTGAAATAAGGAAAAGTTTGTTCATCCAATGTCAGTCATAACTCAAAAACCTATTAAAGATTGCGGATATCATTTGGAAGTTGATTTGGAACTcaagtgttgtttttaaaaattaaagtaattCACTGTCTTGACTGTTCATGAGTTACCTTCATGTTTAGTTGAGTTTACTTATGCTTTTTAGGCAGTAGAACATTAATTTTAAGGTTTAACCAAGctccttcatttaaaaaaatctaagttaAATTCTAGAAAGAGATGGGTATTCAgtcataaatttaaaaattatgagCGCACACTAATACTTATTATAAATGCTGCAATTTTAATAAAAGAGACCATTTTATTTCAATGTGACTTTAATGTGGTGATTTCTTACCAGGGGTATGGTGCCCACTAGAGGGCCTCAGCAAACAAggcaaaataagttttaaaaccatttaggTTTTGATACAGTTGAGTACTGGTTGAGTACTATATGAAAACTATATGACTATGACTATAtagtcatatacatatatattatttgtgttgatAATTTGTATTGTCAAACTTTTATAGtagtaacttaaacattttaagttcagttatTAAATCACAATAAATTCAACAAATAAGTCCAAACAACTACATActtatatacagttatatattctactaaataaaatctaatcaTGAGTCACCATAATTCTTATTTAATTTAGTGACTTTGActgaaaatgacatttaaatgacattaattaacaattttttatattaacaatttttttaaatgttcaatgAATTTCTtgaagtaaaaacataaacaattccATAATTATAATAGAGTTTAATGTGTAATGCGTTAAGCtgcacctgcctttgccttgatctGCTCTCACCAATGCCTTGTGCATTGCCCTCTATCTGTCGAGTAATtgacaaaacaaagaaaactactaaacaaacaaacaaacaaacaaaaggttacattcaatttgaaatgacaatctctgtcaaAGATATTTGCTCCAACCACCTCCCCagcattctccctctcttcttaaaagggatggtgggccaaatcaaaggttagaatgggccaactttggcccgtagaccctagtttgggcatctctgctttataGGGTAAAGAATATAGGGCTATTGGTGGctggtatttttttgtatttttattacaatataatttgAAAAGTCATATATTACCTGCAGATACAGTCCAGGGTTTTTCCTATTTCAATGAGTGCCCTATAAAAGGTCAGGCTGCCAGGTGTACTACATTGCTGTGGACAATGGAGAGCTTTTGagtcaaaaaaaagaaaaccagtGTCTTTGAAGGAACAACATGTGTGACTAAACATCTCATTTGCTGTGTATGACGGGGGATCCAATTCATTATTCCAATTTCGTTTGTCACCCTTTGTTTTAAACACACCTAGTTCAACTTCAAGGCTTACATAACATCATGTAATGGAAACAATGCAAAATGTCcctattttttaacaatatattggATGTTTATACATAGAATTACATAGTAGAACATGATAAGTATCATTTGATAAGCTTTAAACAGA
>TCONS_00011838
ATGGATAAGTTTCGGATTATGGTCCAGTTTCTGCAAGCCAACCAAGAGTCCTTCATGAATGGCATCTGTGGCATCATGGCTCTGGCAAGTGCTCAGATGTATTCCTCATTTGAGTTTACATGCCCTTGCCTTCCAGACTACAATTATGCCTATGGCATCGGCATTCTCATCGTTCCGCCAATATGGTTCTTCTTACTTGGATATGTAATGAACAATAACATATCAGTGTTAACCGAAGAATGGAAGAGACCCGTTGGAAAGCGCAGCAAAGATCCGGCGGTATTGCGCTATATGTTCAGCTCCATGACGCAGCGCGCTCTCATCGCTCCGGCTGTATGGATAGCCGTGACTTTAATGGACGGCAAGAGCTTTTTGTGCGCCTTCAGTCCCACGGCGGATTTATCCGAGTTTGTCAACGAGAGCTATCAAAGCTTATCACAAAAAGAGCTTCTGAAAATTCAAGCAAAGATTCCGTGTAAAGACATATTTGAAGAGCATGAGATTATTTCCAGAGAAGCGGCCACTAGGTATATTCGCTGTTTGTCACAGgCATGCGGATGGACCTTTTTGATGGTTATAACTCTCGTAGCCTTCTTGGTAAGGGCAATAAGACCTTGTTTTACCCAAGCTGCTTTTCTAAAAACCAAATACTGGTCGCATTACATTGACACAGAGCGCAAACTATTTGACGAAACGTGCAAAGAGCACGCCAAGAGTTTCGCCAAAGTCTGCATACAGCAATACTTTGAGAGCATCAGTGGAGAAATTGTTTCACAGCTTCCACAGTCCCCTGCAAAGAAAGGGAAAGGTAATAAAGATGAGGATGGAGAAAAACAGAAGAGTGATGAGGAGAGGCTTCTAGGAATCCGAAAAGAAGGCGACATGAACAAAGTGCTCTGGAACTGGCATACATGTAAACCTCCGCTACTGCTGAGTAAACGCACTGAAGAAATGAATGGACATGCACACTTAGATACCCACAGCCTCACTGATGAGCGCCATACCAAAAAAAAAGCTGTGGTGTACTATTCCAAAGTCTGA

Function

symbol description
calhm1 Predicted to enable cation channel activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CALHM1 (calcium homeostasis modulator 1).

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005227 calcium activated cation channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function

KEGG:

id description
ko04742 Taste transduction
ko02000 Transporters

Ensembl:

ensembl_id ENSDARG00000077021

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011837 False 3309 mRNA 0.36 3 25412307 25417915
TCONS_00011838 True 1041 mRNA 0.45 2 25412674 25415925

Neighbor

gene id symbol gene type direction distance location
XLOC_005993 calhm3 coding upstream 405 25410594 ~ 25411902 (+)
XLOC_005992 gsto2 coding upstream 9535 25396896 ~ 25402772 (+)
XLOC_005991 gsto1 coding upstream 23256 25380432 ~ 25389051 (+)
XLOC_005990 chuk coding upstream 32487 25286538 ~ 25379820 (+)
XLOC_005989 ap3m1 coding upstream 203224 25199849 ~ 25209083 (+)
XLOC_005995 calhm2.2 coding downstream 646 25418561 ~ 25426955 (+)
XLOC_005996 si:dkey-51a16.9 coding downstream 10762 25428677 ~ 25438298 (+)
XLOC_005997 BX530079.1 coding downstream 26069 25443984 ~ 25444523 (+)
XLOC_005998 atoh7 coding downstream 31766 25449681 ~ 25450725 (+)
XLOC_005999 pkd2l1 coding downstream 37404 25455319 ~ 25471376 (+)
XLOC_005984 AL929005.1 non-coding upstream 583438 24828753 ~ 24828869 (+)
XLOC_005978 NA non-coding upstream 762368 24597665 ~ 24649939 (+)
XLOC_005975 NA non-coding upstream 839379 24570620 ~ 24572928 (+)
XLOC_005962 CR352246.1 non-coding upstream 1591007 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 2001797 23388493 ~ 23410510 (+)
XLOC_006005 NA non-coding downstream 352084 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 526364 25944279 ~ 25961369 (+)
XLOC_006008 NA non-coding downstream 547812 25965727 ~ 25983365 (+)
XLOC_006009 NA non-coding downstream 638542 26056457 ~ 26065264 (+)

Expression


Co-expression Network